Tag archaea [at least 200 articles] Export

Recent papers classified by the tag archaea.

	Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia [My Copy] Science, Vol. 326, No. 5951. (16 October 2009), pp. 422-426. by Anne E. Dekas, Rachel S. Poretsky, Victoria J. Orphan posted to symbionts sulfur_reduction phylogeny nitrogenase nitrogen_fixation nif methane_oxidation metabolism ion_mass_spectrometry archaea by ajsferreira on 2009-11-25 11:40:32 as along with 1 group iSEEM
	Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group [My Copy] Environmental Microbiology (November 2009) by Anke Meyerdierks, Michael Kube, Ivaylo Kostadinov, et al.Hanno Teeling, Frank O. Glöckner, Richard Reinhardt, Rudolf Amann posted to transcriptomics mrna_expression methanogens metagenomics archaea by ajsferreira on 2009-11-25 10:54:10 as
	Distribution and Diversity of Archaeal and Bacterial Ammonia Oxidizers in Salt Marsh Sediments [My Copy] Appl. Environ. Microbiol., Vol. 75, No. 23. (1 December 2009), pp. 7461-7468. by Nicole S. Moin, Katelyn A. Nelson, Alexander Bush, Anne E. Bernhard posted to sediment bacteria archaea amo ammonia by skato_toyaku on 2009-11-19 06:56:32 as
	Not so old Archaea – the antiquity of biogeochemical processes in the archaeal domain of life [My Copy] Geobiology, Vol. 7, No. 5. (2009), pp. 495-514. by Carrine E. Blank posted to archaea by skato_toyaku on 2009-11-11 05:46:43 as
	Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota [My Copy] Nat Rev Micro, Vol. 6, No. 3. (01 March 2008), pp. 245-252. by Celine Brochier-Armanet, Bastien Boussau, Simonetta Gribaldo, Patrick Forterre posted to archaea by ThomasKipper to the group Molecular Enzymetechnology and Biochemistry (AG Siebers) on 2009-11-05 11:43:45 as along with 1 person kinestetika
	A single-base resolution map of an archaeal transcriptome [My Copy] Genome Research (2 November 2009) by Omri Wurtzel, Rajat Sapra, Feng Chen, Yiwen Zhu, Blake A. Simmons, Rotem Sorek posted to transcriptomics sulfolobus regulation mapping archaea by neils on 2009-11-03 22:20:53 as along with 1 person and 1 group ppgardne Journal picks
	Archaeal RNA polymerase. [My Copy] Current opinion in structural biology (30 October 2009) by Akira Hirata, Katsuhiko S. Murakami posted to structure rna review polymerase archaea by neils on 2009-11-03 22:19:13 as
	The ssDNA Genome of Novel Archaeal Virus HRPV-1 Is Enclosed in the Envelope Decorated with Glycoprotein Spikes. [My Copy] Journal of virology (28 October 2009) by Maija K. Pietilä, Simonas Laurinavicius, Jukka Sund, Elina Roine, Dennis H. Bamford posted to virus structure envelope archaea by neils on 2009-11-02 04:16:53 as along with 1 person Terkko
	Global ecological patterns in uncultured Archaea [My Copy] The ISME Journal (22 October 2009) by Jean-Christophe Auguet, Albert Barberan, Emilio O. Casamayor posted to uncultured archaea by skato_toyaku on 2009-10-24 12:26:38 as
	A 3-Hydroxypropionate/4-Hydroxybutyrate Autotrophic Carbon Dioxide Assimilation Pathway in Archaea [My Copy] Science, Vol. 318, No. 5857. (14 December 2007), pp. 1782-1786. by Ivan A. Berg, Daniel Kockelkorn, Wolfgang Buckel, Georg Fuchs posted to pathway hydroxypropionate co2 carbon autotrophic assimilation archaea 4-hydroxybutyrate by Winzer on 2009-10-23 12:06:34 as along with 3 people and 1 group jwm kinestetika renatomilani microbiology_nijmegen
	Novel Families of Putative Protein Kinases in Bacteria and Archaea: Evolution of the âEukaryoticâ Protein Kinase Superfamily [My Copy] Genome Research, Vol. 8, No. 10. (1 October 1998), pp. 1038-1047. by Christopher J. Leonard, L. Aravind, Eugene V. Koonin posted to kinase evolution bioinformatics bacteria archaea by anuragsethi on 2009-10-23 07:20:58 as along with 3 people and 1 group robfsouza thegoose2 tharris C. elegans / WormBase
	A korarchaeal genome reveals insights into the evolution of the Archaea [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 23. (10 June 2008), pp. 8102-8107. by James G. Elkins, Mircea Podar, David E. Graham, et al.Kira S. Makarova, Yuri Wolf, Lennart Randau, Brian P. Hedlund, CÃ©line Brochier-Armanet, Victor Kunin, Iain Anderson, Alla Lapidus, Eugene Goltsman, Kerrie Barry, Eugene V. Koonin, Phil Hugenholtz, Nikos Kyrpides, Gerhard Wanner, Paul Richardson, Martin Keller, Karl O. Stetter posted to genome evolution archaea by kinestetika on 2009-10-06 13:25:56 as along with 3 people cmzmasek neils skato_toyaku
	Everything in moderation: Archaea as 'non-extremophiles' [My Copy] Current Opinion in Genetics & Development, Vol. 8, No. 6. (December 1998), pp. 649-654. by E. DeLong posted to uncultured archaea by skato_toyaku on 2009-09-30 16:57:53 as
	Temperature-sensitive motility of Sulfolobus acidocaldarius influences population distribution in extreme environments. [My Copy] Journal of bacteriology, Vol. 181, No. 13. (July 1999), pp. 4020-4025. by P. Lewus, R. M. Ford posted to sulfolobus_acidocaldarius sulfolobus motility flagella archaea by agarchaea on 2009-09-30 10:25:42 as
	The Iho670 fibers of Ignicoccus hospitalis: a new type of archaeal cell surface appendage. [My Copy] Journal of bacteriology, Vol. 191, No. 20. (October 2009), pp. 6465-6468. by Daniel W. Müller, Carolin Meyer, Sonja Gürster, et al.Ulf Küper, Harald Huber, Reinhard Rachel, Gerhard Wanner, Reinhard Wirth, Annett Bellack posted to signal_peptide pilus pilin pili archaea by agarchaea on 2009-09-30 08:22:24 as
	Environmental diversity of bacteria and archaea. [My Copy] Systematic biology, Vol. 50, No. 4. (August 2001), pp. 470-478. by E. F. DeLong, N. R. Pace posted to tree-of-life microbial_evolution environmental_diversity bacterial-evolution bacteria archaea by cmzmasek on 2009-09-30 01:25:37 as along with 1 person jmeppley
	Three-Dimensional Morphological and Textural Complexity of Archean Putative Microfossils from the Northeastern Pilbara Craton: Indications of Biogenicity of Large (>15 μm) Spheroidal and Spindle-Like Structures [My Copy] Astrobiology, Vol. 9, No. 7. (September 2009), pp. 603-615. by Kenichiro Sugitani, Kathleen Grey, Tsutomu Nagaoka, Koichi Mimura posted to fossil evolution australia astrobiology archaea by neils on 2009-09-28 00:09:17 as along with 1 person thegoose
	Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 86, No. 23. (December 1989), pp. 9355-9359. by N. Iwabe, K. Kuma, M. Hasegawa, S. Osawa, T. Miyata posted to rrna phylogenetic_tree evolution ef-tu archaea by jeargle on 2009-09-25 19:11:12 as
	Unusual modification patterns in the transfer ribonucleic acids of archaebacteria [My Copy] Current Microbiology, Vol. 4, No. 4. (1 July 1980), pp. 245-249. by Ramesh Gupta, Carl Woese posted to trna modified_nucleotides archaea by jeargle on 2009-09-25 19:09:07 as
	Identification of components of electron transport chains in the extremely thermoacidophilic crenarchaeon Metallosphaera sedula through iron and sulfur compound oxidation transcriptomes. [My Copy] Applied and environmental microbiology, Vol. 74, No. 24. (December 2008), pp. 7723-7732. by Kathryne S. Auernik, Robert M. Kelly posted to transcriptomics sulfur_compounds sulfolobus electron_transport_chain archaea by agarchaea on 2009-09-08 14:36:31 as
	The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. [My Copy] Nucleic acids research, Vol. 33, No. 17. (2005), pp. 5691-5702. by Ross Overbeek, Tadhg Begley, Ralph M. Butler, et al.Jomuna V. Choudhuri, Han-Yu Y. Chuang, Matthew Cohoon, Valérie de Crécy-Lagard, Naryttza Diaz, Terry Disz, Robert Edwards, Michael Fonstein, Ed D. Frank, Svetlana Gerdes, Elizabeth M. Glass, Alexander Goesmann, Andrew Hanson, Dirk Iwata-Reuyl, Roy Jensen, Neema Jamshidi, Lutz Krause, Michael Kubal, Niels Larsen, Burkhard Linke, Alice C. McHardy, Folker Meyer, Heiko Neuweger, Gary Olsen, Robert Olson, Andrei Osterman, Vasiliy Portnoy, Gordon D. Pusch, Dmitry A. Rodionov, Christian Rückert, Jason Steiner, Rick Stevens, Ines Thiele, Olga Vassieva, Yuzhen Ye, Olga Zagnitko, Veronika Vonstein posted to psortb_proportions network_biology network_analysis genomics database comparative_genomics bacterial_genomics bact archaea by nyyu on 2009-09-04 22:28:07 as along with 5 people coela mbeeby barriot jwortman balajis
	Archaeal homolog of bacterial type IV prepilin signal peptidases with broad substrate specificity. [My Copy] Journal of bacteriology, Vol. 185, No. 13. (July 2003), pp. 3918-3925. by Sonja-Verena V. Albers, Zalán Szabó, Arnold J. Driessen posted to typeiv sulfolobus signal_peptide signal_peptidase pilin pili flagellin flagella archaea by agarchaea on 2009-09-03 12:49:18 as
	Active-site residues in the type IV prepilin peptidase homologue PibD from the archaeon Sulfolobus solfataricus. [My Copy] Journal of bacteriology, Vol. 188, No. 4. (February 2006), pp. 1437-1443. by Zalán Szabó, Sonja-Verena V. Albers, Arnold J. Driessen posted to sulfolobus signal_peptide signal_peptidase peptidases cleavage archaea by agarchaea on 2009-09-03 12:45:38 as
	Protein secretion in the Archaea: multiple paths towards a unique cell surface. [My Copy] Nature reviews. Microbiology, Vol. 4, No. 7. (06 July 2006), pp. 537-547. by Sonja V. Albers, Zalán Szabó, Arnold J. Driessen posted to secretion pilin pili flagellin flagella assembly archaea by agarchaea on 2009-09-03 12:41:56 as along with 1 person sulfolob
	Identification of diverse archaeal proteins with class III signal peptides cleaved by distinct archaeal prepilin peptidases. [My Copy] Journal of bacteriology, Vol. 189, No. 3. (17 February 2007), pp. 772-778. by Zalán Szabó, Adriana Oliveira, Sonja V. Albers, Jessica C. Kissinger, Arnold J. Driessen, Mechthild Pohlschröder posted to sulfolobus signal_peptide signal_peptidase secretion flak archaea by agarchaea on 2009-09-03 12:40:24 as along with 2 people franklin sulfolob
	Protein phosphorylation in the archaebacterium Sulfolobus acidocaldarius. [My Copy] European journal of biochemistry / FEBS, Vol. 145, No. 3. (17 December 1984), pp. 617-622. by R. Skórko posted to tyrosine threonine sulfolobus_acidocaldarius sulfolobus serine protein_phosphorylation archaea by agarchaea on 2009-09-02 12:36:25 as
	Indicators from archaeal secretomes. [My Copy] Microbiological research (11 April 2008) by Mazen Saleh, Catharine Song, Sabah Nasserulla, L. G. Leduc posted to secretome psortb_proportions psortb_data psort archaea by nyyu on 2009-09-01 07:17:15 as along with 1 person neils
	Toward Automatic Reconstruction of a Highly Resolved Tree of Life [My Copy] Science, Vol. 311, No. 5765. (3 March 2006), pp. 1283-1287. by Francesca D. Ciccarelli, Tobias Doerks, Christian von Mering, Christopher J. Creevey, Berend Snel, Peer Bork posted to phylogeny evolution bioinfo archaea by cmura on 2009-08-23 00:38:55 as along with 20 people and 6 groups pablocarb adampah druvus fhsantanna kinestetika dparks Retchless knaseanka dpollard tny dchughes nirfriedman cmm azazello wenhan maximilianh cmzmasek lonshy diamantis Ema microbiology_nijmegen EisenLab FAB-lab G4ID Genetics-of-Gambling MBLAB
	Novel homologs of replication protein A in Archaea: implications for the evolution of ssDNA-binding proteins [My Copy] Trends in Biochemical Sciences, Vol. 23, No. 8. (1 August 1998), pp. 273-277. by F. Chédin, Erica M. Seitz, Stephen C. Kowalczykowski posted to ssdna sm review evolution archaea by cmura on 2009-08-21 18:15:34 as
	Outside the unusual cell wall of hyperthermophilic archaeon Aeropyrum pernix. [My Copy] Molecular & cellular proteomics : MCP (28 July 2009) by Gianna Palmieri, Raffaele Cannio, Immacolata Fiume, Mosé Rossi, Gabriella Pocsfalvi posted to surface_proteins psortb_data psort archaea by nyyu on 2009-08-19 23:59:39 as
	Genome-wide transcription map of an archaeal cell cycle [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 8. (20 Feb 2007), pp. 2939-2944. by Magnus Lundgren, Rolf Bernander posted to transcription scale replication regulation prokaryotes mitosis microarrays large dataset chromosome archaea by robfsouza on 2009-08-12 21:33:24 as
	On the Origin of Eukaryotes [My Copy] Science, Vol. 325, No. 5941. (7 August 2009), pp. 666-668. by Carl Zimmer posted to review prokaryote mitochondrium evolution eukaryote archaea by rschulz on 2009-08-12 09:50:28 as along with 2 people dinnes christinewells
	Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis [My Copy] PLoS ONE, Vol. 4, No. 7. (20 July 2009), e6291. by Peter Bakke, Nick Carney, Will Deloache, et al.Mary Gearing, Kjeld Ingvorsen, Matt Lotz, Jay Mcnair, Pallavi Penumetcha, Samantha Simpson, Laura Voss, Max Win, Laurie J. Heyer, A. Malcolm Campbell posted to annotation archaea comparison genomics halophile halorhabdus by neils on 2009-07-22 00:00:35 as along with 4 people and 1 group druvus kiekyon renatomilani ppgardne Journal picks
	Origin and evolution of the archaeo-eukaryotic primase superfamily and related palm-domain proteins: structural insights and new members [My Copy] Nucl. Acids Res., Vol. 33, No. 12. (15 Jul 2005), pp. 3875-3896. by Lakshminarayan M. Iyer, Eugene V. Koonin, Detlef D. Leipe, L. Aravind posted to virus transcription superfamily primase inactive evolution eukaryote enzyme dna binding archaea aravind by robfsouza on 2009-07-18 02:41:07 as
	Parallel adaptations to high temperatures in the Archaean eon. [My Copy] Nature, Vol. 456, No. 7224. (18 December 2008), pp. 942-945. by B. Boussau, S. Blanquart, A. Necsulea, N. Lartillot, M. Gouy posted to archaea non-homogeneus_models phylogenetics protein_evolutionary_rate by chica on 2009-07-13 12:16:14 as along with 3 people and 1 group idoerg cmzmasek djkt iSEEM
	Expanding and understanding the genetic toolbox of the hyperthermophilic genus Sulfolobus. [My Copy] Biochemical Society transactions, Vol. 37, No. Pt 1. (February 2009), pp. 97-101. by M. Wagner, S. Berkner, M. Ajon, A. J. Driessen, G. Lipps, S. V. Albers posted to archaea group knockouts method sulfolobus by agarchaea on 2009-07-08 21:32:11 as along with 2 people Reimann sulfolob
	Proteomic analysis of secreted membrane vesicles of archaeal Sulfolobus species reveals the presence of endosome sorting complex components. [My Copy] Extremophiles : life under extreme conditions, Vol. 13, No. 1. (January 2009), pp. 67-79. by A. F. Ellen, S. V. Albers, W. Huibers, et al.A. Pitcher, C. F. Hobel, H. Schwarz, M. Folea, S. Schouten, E. J. Boekema, B. Poolman, A. J. Driessen posted to archaea group secretion sulfolobus by agarchaea on 2009-07-08 21:30:20 as along with 1 person BenjaminMeyer
	Diversity of archaeal type IV pilin-like structures. [My Copy] Extremophiles : life under extreme conditions, Vol. 13, No. 3. (May 2009), pp. 403-410. by S. V. Albers, M. Pohlschröder posted to archaea assembly atpase atpases flagella group pili pilin pilus review secretion sulfolobus by agarchaea on 2009-07-08 21:28:37 as
	Biochemical and structural characterization of Cren7, a novel chromatin protein conserved among Crenarchaea [My Copy] Nucl. Acids Res. (20 Dec 2007), gkm1128. by Li Guo, Yingang Feng, Zhenfeng Zhang, et al.Hongwei Yao, Yuanming Luo, Jinfeng Wang, Li Huang posted to archaea binding chromatin dna protein by robfsouza on 2009-07-05 18:39:07 as
	CC1, a Novel Crenarchaeal DNA Binding Protein [My Copy] J. Bacteriol., Vol. 189, No. 2. (15 Jan 2007), pp. 403-409. by Xiao Luo, Uli Schwarz-Linek, Catherine H. Botting, Reinhard Hensel, Bettina Siebers, Malcolm F. White posted to archaea binding chromatin dna by robfsouza on 2009-07-05 18:37:10 as
	Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R70. by Yvan Zivanovic, Jean Armengaud, Arnaud Lagorce, et al.Christophe Leplat, Philippe Guerin, Murielle Dutertre, Veronique Anthouard, Patrick Forterre, Patrick Wincker, Fabrice Confalonieri posted to archaea genomics proteomics radiation resistance thermococcus by neils on 2009-07-01 00:24:13 as
	A unique virus release mechanism in the Archaea [My Copy] Proceedings of the National Academy of Sciences (19 June 2009) by Ariane Bize, Erik A. Karlsson, Karin Ekefjärd, et al.Tessa E. Quax, Mery Pina, Marie-Christine Prevost, Patrick Forterre, Olivier Tenaillon, Rolf Bernander, David Prangishvili posted to archaea physiology virus by neils on 2009-06-26 00:29:43 as
	Prevalence of transcription promoters within archaeal operons and coding sequences. [My Copy] Molecular systems biology, Vol. 5 (2009) by T. Koide, D. J. Reiss, J. C. Bare, et al.W. L. Pang, M. T. Facciotti, A. K. Schmid, M. Pan, B. Marzolf, P. T. Van, F. Y. Lo, A. Pratap, E. W. Deutsch, A. Peterson, D. Martin, N. S. Baliga posted to archaea comparative_genomics network_biology operons psortb_proportions transcriptional_regulatory_network by nyyu on 2009-06-22 23:55:09 as
	Growth Physiology of the Hyperthermophilic Archaeon Thermococcus litoralis: Development of a Sulfur-Free Defined Medium, Characterization of an Exopolysaccharide, and Evidence of Biofilm Formation. [My Copy] Applied and environmental microbiology, Vol. 62, No. 12. (December 1996), pp. 4478-4485. by K. D. Rinker, R. M. Kelly posted to archaea biofilm exopolysaccharide by agarchaea on 2009-06-20 21:49:41 as
	A hidden reservoir of integrative elements is the major source of recently acquired foreign genes and ORFans in archaeal and bacterial genomes [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R65. by Diego Cortez, Patrick Forterre, Simonetta Gribaldo posted to archaea bacteria genetics genomics integration lgt orfan by neils on 2009-06-17 00:12:34 as along with 2 people and 1 group djkt barriot iSEEM
	A methanogen hosted the origin of the genetic code. [My Copy] Journal of theoretical biology (3 June 2009) by Massimo Di Giulio posted to analysis archaea bioinformatics evolution methanogen sequence by neils on 2009-06-10 00:00:12 as
	Phylogenomic DatingâA Method of Constraining the Age of Microbial Taxa That Lack a Conventional Fossil Record [My Copy] Astrobiology, Vol. 9, No. 2. (March 2009), pp. 173-191. by Carrine E. Blank posted to archaea phylogenetic by skato_toyaku on 2009-06-09 01:36:04 as
	Phylogenomic DatingâThe Relative Antiquity of Archaeal Metabolic and Physiological Traits [My Copy] Astrobiology, Vol. 9, No. 2. (March 2009), pp. 193-219. by Carrine E. Blank posted to archaea phylogenetic by skato_toyaku on 2009-06-09 01:35:59 as
	Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens [My Copy] PLoS ONE, Vol. 4, No. 6. (4 June 2009), e5797. by Iain Anderson, Luke E. Ulrich, Boguslaw Lupa, et al.Dwi Susanti, Iris Porat, Sean D. Hooper, Athanasios Lykidis, Magdalena Sieprawska-Lupa, Lakshmi Dharmarajan, Eugene Goltsman, Alla Lapidus, Elizabeth Saunders, Cliff Han, Miriam Land, Susan Lucas, Biswarup Mukhopadhyay, William B. Whitman, Carl Woese, James Bristow, Nikos Kyrpides posted to archaea genomics by Thaverkamp on 2009-06-08 07:54:02 as
	Significant contribution of Archaea to extant biomass in marine subsurface sediments [My Copy] Nature (20 July 2008) by Julius S. Lipp, Yuki Morono, Fumio Inagaki, Kai-Uwe Hinrichs posted to archaea deep-biosphere by yonatanf on 2009-05-19 20:42:46 as along with 3 people and 1 group claymans djkt neils iSEEM

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bacteria	49
evolution	35
genomics	19
review	14
sulfolobus	14
bioinformatics	13
genome	13
phylogeny	12
structure	12
diversity	11
flagella	11
metagenomics	10
ecology	9
pili	9
proteomics	9
secretion	9
protein	8
virus	8
comparative_genomics	7
horizontal-gene-transfer	7
hydrothermal	7
metabolism	7
microbial_genomics	7
phylogenetics	7
regulation	7
evolutionary_genomics	6
kinase	6
microbial	6
pilin	6
sequence	6
antarctic	5
atpase	5
biofilm	5
group	5
hyperthermophile	5
rna	5
ammoniaoxidation	4
analysis	4
binding	4
eukarya	4
marine_microbiology	4
methanococcoides	4
microbial_ecology	4
nanoarcheum	4
psychrophily	4
signal_peptide	4
transcriptomics	4
tree-of-life	4
trial-lecture	4
trna	4
uncultured	4
16s	3
amino-acids	3
assembly	3
biogeography	3
bioinformatics_databases	3
comparative-genomics	3
crens	3
deep-sea	3
dna	3
ecological_genomics	3
environment	3
extremely	3
genetics	3
genome_annotation	3
halophilic	3
lateral_gene_transfer	3
methanogen	3
methanogens	3
nature	3
orthologs	3
pathogen	3
pcrspecs	3
pilus	3
prediction	3
psortb_proportions	3
rareaa	3
rio	3
rrna	3
selenocysteine	3
signal_peptidase	3
ssu	3
transcription	3
translation	3
biodiversity	2
crispr	2
energy_metabolism	2
fish	2
haloferax	2
hgt	2
lgt	2
mrna_expression	2
nif	2
nitrification	2
nitrogen	2
promoter	2
replication	2
starosta	2
sulfur_reduction	2
x-recomb-evidence	2

Tag archaea [at least 200 articles] Export

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