Tag assembly [at least 200 articles] Export

Recent papers classified by the tag assembly.

	An Eulerian path approach to DNA fragment assembly. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753. by P. A. Pevzner, H. Tang, M. S. Waterman posted to sequencing assembly algorithms by aheilbut on 2009-11-07 19:10:27 as along with 14 people and 2 groups jengeldk n00c robsyme Neeperando idoerg dakelley brl A_Olympia briann jmeppley AaronDarling nedwards azazello jwhitney Philosophy_of_Information Blog_and_Wiki_Research
	De novo transcriptome assembly with ABySS [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2872-2877. by Inanc Birol, Shaun D. Jackman, Cydney B. Nielsen, et al.Jenny Q. Qian, Richard Varhol, Greg Stazyk, Ryan D. Morin, Yongjun Zhao, Martin Hirst, Jacqueline E. Schein, Doug E. Horsman, Joseph M. Connors, Randy D. Gascoyne, Marco A. Marra, Steven J. M. Jones posted to transcriptome rna-seq novo de assembly by dswan on 2009-11-06 17:21:55 as along with 9 people dakelley torfinnnome TRHvidsten rtogawa ramonvidal stubrown darshan GustavoLacerda druvus
	Genome assembly forensics: finding the elusive mis-assembly [My Copy] Genome Biology, Vol. 9, No. 3. (14 March 2008), R55. by Adam Phillippy, Michael Schatz, Mihai Pop posted to misassembly genome assembly by n00c on 2009-11-06 17:05:47 as along with 10 people and 1 group Thaverkamp kiekyon dakelley jasontsai orzenil druvus fernan lp2 Neeperando GustavoLacerda DeNovoAssembly-SIMR
	Sense from sequence reads: methods for alignment and assembly [My Copy] Nature Methods, Vol. 6, No. 11s. (15 October 2009), pp. S6-S12. by Paul Flicek, Ewan Birney posted to assembly 454sequencing by Thaverkamp on 2009-11-06 14:58:52 as along with 9 people jasontsai natstreet seb1 druvus chvlyl GeeSharpMinor n00c venancio desany
	PAVE: Program for assembling and viewing ESTs [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 400. by Carol Soderlund, Eric Johnson, Matthew Bomhoff, Anne Descour posted to software assembly 454sequencing by Thaverkamp on 2009-11-06 13:21:33 as along with 4 people rtogawa FabienneGranier natstreet druvus
	LookSeq: A browser-based viewer for deep sequencing data [My Copy] Genome Research, Vol. 19, No. 11. (29 November 2009), pp. 2125-2132. by Heinrich M. Manske, Dominic P. Kwiatkowski posted to visualisation software assembly 454sequencing by Thaverkamp on 2009-11-06 13:14:16 as along with 23 people and 2 groups inesdesantiago idonaldson heliopais owhitney GustavoLacerda ngehlenborg sandfire fpattyn xianjun katholt stubrown orzenil operon guhjy kongl stajich n00c torfinnnome nuin kshameer neils druvus natstreet BergmanLab Mycology
	EagleView: a genome assembly viewer for next-generation sequencing technologies. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1538-1543. by Weichun Huang, Gabor Marth posted to viewer software assembly by Thaverkamp on 2009-11-06 13:12:47 as along with 15 people imaginatio hpaces darian n00c xingxu natstreet abizar druvus balicea bcondon fpattyn APRegier Neeperando GustavoLacerda guhjy
	The independence of our genome assemblies. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 6. (18 March 2003), pp. 3025-3026. by Mark D. Adams, Granger G. Sutton, Hamilton O. Smith, Eugene W. Myers, J. Craig Venter posted to myers human-genome craigventer assembly by seb1 on 2009-11-04 17:53:57 as
	Summary of the Online Focus on next-generation sequencing data analysis [My Copy] Nature Methods, Vol. 6, No. 11. (01 November 2009), pp. 802-803. posted to sequencing nature assembly by seb1 on 2009-11-03 16:39:36 as along with 1 person GeeSharpMinor
	ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads [My Copy] Genome Biology, Vol. 10, No. 10. (1 October 2009), R103. by Iain MacCallum, Dariusz Przybylski, Sante Gnerre, et al.Joshua Burton, Ilya Shlyakhter, Andreas Gnirke, Joel Malek, Kevin McKernan, Swati Ranade, Terrance Shea, Louise Williams, Sarah Young, Chad Nusbaum, David Jaffe posted to sequencing assembly by djkt on 2009-11-03 01:40:24 as along with 10 people and 1 group n00c azazello dakelley jgill GustavoLacerda ramonvidal justinhjohnson stajich druvus neils Mycology
	RePS: a sequence assembler that masks exact repeats identified from the shotgun data. [My Copy] Genome research, Vol. 12, No. 5. (1 May 2002), pp. 824-831. by Jun Wang, Gane Ka-Shu K. Wong, Peixiang Ni, et al.Yujun Han, Xiangang Huang, Jianguo Zhang, Chen Ye, Yong Zhang, Jianfei Hu, Kunlin Zhang, Xin Xu, Lijuan Cong, Hong Lu, Xide Ren, Xiaoyu Ren, Jun He, Lin Tao, Douglas A. Passey, Jian Wang, Huanming Yang, Jun Yu, Songgang Li posted to ngs combined-assembly assembly by natstreet on 2009-11-02 16:41:55 as along with 3 people seb1 n00c orzenil
	Assembly of Large Genomes from Paired Short Reads [My Copy] Bioinformatics and Computational Biology (2009), pp. 30-43. by Benjamin Jackson, Patrick Schnable, Srinivas Aluru posted to assembly by seb1 on 2009-11-02 16:02:38 as
	Tetherin Inhibits HIV-1 Release by Directly Tethering Virions to Cells [My Copy] Cell, Vol. 139, No. 3. (30 October 2009), pp. 499-511. by David Perez-Caballero, Trinity Zang, Alaleh Ebrahimi, et al.Matthew W. McNatt, Devon A. Gregory, Marc C. Johnson, Paul D. Bieniasz posted to innate hiv assembly by wsjames to the group Oxford Virology on 2009-11-02 10:18:44 as
	Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2878-2881. by Bas E. Dutilh, Martijn A. Huynen, Marc Strous posted to short-reads sequence-alignment metagenomics assembly by dakelley on 2009-11-02 04:32:58 as along with 7 people and 1 group druvus kinestetika ThomasDOtto jasontsai skembel sharpton jmeppley iSEEM
	The GNUMAP Algorithm: Unbiased Probabilistic Mapping of Oligonucleotides from Next-Generation Sequencing. [My Copy] Bioinformatics (Oxford, England) (27 October 2009), btp614. by Nathan L. Clement, Quinn Snell, Mark J. Clement, et al.Peter C. Hollenhorst, Jahnvi Purwar, Barbara J. Graves, Bradley R. Cairns, W. Evan Johnson posted to software sequencing genomics bioinformatics assembly by operon on 2009-10-31 00:48:49 as along with 3 people heliopais n00c druvus
	Maximum likelihood genome assembly. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 8. (August 2009), pp. 1101-1116. by Paul Medvedev, Michael Brudno posted to theory assembly by dakelley on 2009-10-28 20:31:10 as along with 7 people nuin walshtp djkt n00c natstreet druvus operon
	Why greed works for shortest common superstring problem [My Copy] Theoretical Computer Science (15 September 2009) by Bin Ma posted to mathematics greedy assembly by seb1 on 2009-10-28 17:46:10 as along with 2 people n00c Neeperando
	Incorporation of Fungal Cellulases in Bacterial Minicellulosomes Yields Viable, Synergistically Acting Cellulolytic Complexes [My Copy] Appl. Environ. Microbiol., Vol. 73, No. 12. (15 June 2007), pp. 3822-3832. by Florence Mingardon, Angelique Chanal, Ana M. Lopez-Contreras, Cyril Dray, Edward A. Bayer, Henri-Pierre Fierobe posted to fungal cellulosome cellulases assembly by katrinschwarz on 2009-10-26 18:37:14 as along with 1 person Winzer
	Hierarchical Scaffolding With Bambus [My Copy] Genome Research, Vol. 14, No. 1. (January 2004), pp. 149-159. by Mihai Pop, Daniel S. Kosack, Steven L. Salzberg posted to scaffolding assembly by dakelley on 2009-10-26 18:16:23 as along with 4 people and 1 group druvus azazello wenhan Neeperando MBLAB
	A report on the 2009 SIG on short read sequencing and algorithms (Short-SIG) [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2863-2864. by Michael Brudno, Paul Medvedev, Jens Stoye, Francisco M. De La Vega posted to sequencing meeting brudno assembly assembler by seb1 on 2009-10-23 16:56:54 as along with 3 people idonaldson n00c druvus
	A fast hybrid short read fragment assembly algorithm [My Copy] Bioinformatics, Vol. 25, No. 17. (1 September 2009), pp. 2279-2280. by Bertil Schmidt, Ranjan Sinha, Bryan Beresford-Smith, Simon J. Puglisi posted to ngs assembly by cthachuk on 2009-10-23 00:28:06 as along with 14 people and 2 groups orzenil GustavoLacerda APRegier dakelley katholt GeeSharpMinor dayjm djkt dswan pachorip natstreet druvus n00c jmeppley Bioinformatics Journal picks
	OSLay: optimal syntenic layout of unfinished assemblies [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. 1573-1579. by Daniel C. Richter, Stephan C. Schuster, Daniel H. Huson posted to oslay np-complete assembly by n00c on 2009-10-19 16:08:56 as along with 4 people dakelley AaronDarling azazello GustavoLacerda
	MapView: visualization of short reads alignment on a desktop computer. [My Copy] Bioinformatics (Oxford, England) (15 April 2009) by Hua Bao, Hui Guo, Jinwei Wang, Renchao Zhou, Xuemei Lu, Suhua Shi posted to visualisation short-reads sequencing assembly alignment by torfinnnome on 2009-10-19 14:12:18 as along with 4 people jmeppley robsyme neils svenrahmann
	Assembly of viruses and the pseudo-law of mass action [My Copy] The Journal of Chemical Physics, Vol. 131, No. 15. (2009), 155101. by Alexander Yu, Robijn F. Bruinsma, Joseph Rudnick posted to virus mass assembly alexan09pdf action by paulschlesinger on 2009-10-16 02:16:15 as
	Sequence assembly [My Copy] Computational Biology and Chemistry, Vol. 33, No. 2. (April 2009), pp. 121-136. by K. Scheibye-Alsing, S. Hoffmann, A. Frankel, et al.P. Jensen, P. F. Stadler, Y. Mang, N. Tommerup, M. J. Gilchrist, A. B. Nygård, S. Cirera posted to assembly by GustavoLacerda on 2009-10-14 18:41:11 as along with 8 people n00c katholt orzenil guhjy natstreet Thaverkamp robsyme druvus
	Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium [My Copy] Genome Biology, Vol. 10, No. 9. (25 September 2009), R102. by Richard Stabler, Miao He, Lisa Dawson, et al.Melissa Martin, Esmeralda Valiente, Craig Corton, Trevor Lawley, Mohammed Sebaihia, Michael Quail, Graham Rose, Dale Gerding, Maryse Gibert, Michel Popoff, Julian Parkhill, Gordon Dougan, Brendan Wren posted to variation sequencing sanger illumina evolution assembly 454 by sandfire on 2009-10-13 20:44:54 as along with 3 people jlmoir jecouk druvus
	Correcting base-assignment errors in repeat regions of shotgun assembly. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 4, No. 1. (r 2007), pp. 54-64. by Degui Zhi, Uri Keich, Pavel Pevzner, Steffen Heber, Haixu Tang posted to sequencing repeats euler base-calling assembly by n00c on 2009-10-13 20:22:18 as along with 2 people dakelley ojabado
	Parametric complexity of sequence assembly: theory and applications to next generation sequencing. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 7. (July 2009), pp. 897-908. by Niranjan Nagarajan, Mihai Pop posted to theory assembly by dakelley on 2009-10-13 15:49:40 as along with 3 people n00c sitalange nuin
	A scaffold analysis tool using mate-pair information in genome sequencing. [My Copy] Journal of biomedicine & biotechnology, Vol. 2008 (2008) by Pan-Gyu G. Kim, Hwan-Gue G. Cho, Kiejung Park posted to scaffold assembly by dakelley on 2009-10-12 21:37:07 as along with 2 people orzenil Neeperando
	A machine-learning approach to combined evidence validation of genome assemblies [My Copy] Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 744-750. by Jeong-Hyeon Choi, Sun Kim, Haixu Tang, Justen Andrews, Don G. Gilbert, John K. Colbourne posted to post-assembly assembly by dakelley on 2009-10-09 23:36:32 as along with 7 people thegoose2 orzenil GustavoLacerda Neeperando tharris ttuechler bertelsen
	The greedy path-merging algorithm for contig scaffolding [My Copy] J. ACM, Vol. 49, No. 5. (September 2002), pp. 603-615. by Daniel H. Huson, Knut Reinert, Eugene W. Myers posted to theory assembly by dakelley on 2009-10-09 22:45:01 as along with 2 people and 1 group azazello tpreeprem gatech-compgenomics
	A consistency-based consensus algorithm for de novo and reference-guided sequence assembly of short reads [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1118-1124. by Tobias Rausch, Sergey Koren, Gennady Denisov, et al.David Weese, Anne-Katrin Emde, Andreas Doring, Knut Reinert posted to ngs assembly by GustavoLacerda on 2009-10-08 21:39:09 as along with 16 people and 2 groups cthachuk jasontsai n00c nuin dakelley skembel Thaverkamp reyez TRHvidsten djkt hpaces APRegier pengchy natstreet druvus darian iSEEM Bioinformatics
	Genome assembly reborn: recent computational challenges [My Copy] Brief Bioinform, Vol. 10, No. 4. (1 July 2009), pp. 354-366. by Mihai Pop posted to ngs assembly by GustavoLacerda on 2009-10-08 21:18:41 as along with 28 people and 1 group cthachuk n00c agbiotec shabhonam pachorip APRegier jmcq stevebs jonilaserson michaelbarton inesdesantiago GeeSharpMinor bertelsen aprasad ananta_samudra sandfire jmeppley mlangill fgibson ppgardne TRHvidsten pengchy robsyme nuin kiekyon natstreet druvus idoerg Journal picks
	Aggressive assembly of pyrosequencing reads with mates [My Copy] Bioinformatics, Vol. 24, No. 24. (15 December 2008), pp. 2818-2824. by Jason R. Miller, Arthur L. Delcher, Sergey Koren, et al.Eli Venter, Brian P. Walenz, Anushka Brownley, Justin Johnson, Kelvin Li, Clark Mobarry, Granger Sutton posted to ngs assembly by GustavoLacerda on 2009-10-08 21:16:37 as along with 17 people and 2 groups n00c APRegier jonilaserson dakelley idoerg orzenil ela503 natstreet druvus azazello acn jasontsai jmeppley cisevol malcook Neeperando djkt BergmanLab SIMR bioinformatics
	Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics [My Copy] Mol Biol Evol (25 August 2009), msp188. by John G. Gibbons, Eric M. Janson, Chris T. Hittinger, Mark Johnston, Patrick Abbot, Antonis Rokas posted to transcriptome ngs assembly by GustavoLacerda on 2009-10-08 21:05:32 as along with 6 people and 1 group mlog kiekyon biomcgary stajich natstreet druvus Mycology
	Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome [My Copy] BMC Genomics, Vol. 9, No. 1. (2008), 404. by Nicole Quinn, Natasha Levenkova, William Chow, et al.Pascal Bouffard, Keith Boroevich, James Knight, Thomas Jarvie, Krzysztof Lubieniecki, Brian Desany, Ben Koop, Timothy Harkins, William Davidson posted to ngs assembly by natstreet on 2009-10-07 16:24:51 as along with 4 people seb1 druvus orzenil neils
	An integrative framework for stochastic, size-structured community assembly [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 15. (14 April 2009), pp. 6170-6175. by J. P. O'Dwyer, J. K. Lake, A. Ostling, V. M. Savage, J. L. Green posted to theory populations ecology communities assembly by klauso on 2009-10-06 10:28:25 as along with 3 people deanmalmgren yasminlucero gulsacan
	ABACAS: algorithm-based automatic contiguation of assembled sequences. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 15. (1 August 2009), pp. 1968-1969. by Samuel Assefa, Thomas M. Keane, Thomas D. Otto, Chris Newbold, Matthew Berriman posted to sequencing ordering contig assembly abacas by sconlan on 2009-10-05 16:52:16 as along with 7 people and 1 group GustavoLacerda adamjamesreid jmeppley sandfire druvus pengchy AlexBateman Journal picks
	The phusion assembler. [My Copy] Genome research, Vol. 13, No. 1. (January 2003), pp. 81-90. by James C. Mullikin, Zemin Ning posted to ngs assembly by natstreet on 2009-10-05 12:50:54 as along with 5 people druvus bpb wenhan dmc azazello
	De novo bacterial genome sequencing: Millions of very short reads assembled on a desktop computer [My Copy] Genome Research, Vol. 18, No. 5. (10 May 2008), pp. 802-809. by David Hernandez, Patrice FranÃ§ois, Laurent Farinelli, Magne Ãsterã¥s, Jacques Schrenzel posted to short-read sequencing genome de-novo bacterial assembly by n00c on 2009-10-01 16:16:31 as along with 15 people and 4 groups GeeSharpMinor pachorip operon druvus dakelley acn nmohelli GustavoLacerda jmeppley stajich azazello Katje iris42 balicea Neeperando DeNovoAssembly-SIMR microbiology_nijmegen Mycology gatech-compgenomics
	Whole-Genome Sequencing and Assembly with High-Throughput, Short-Read Technologies [My Copy] PLoS ONE, Vol. 2, No. 5. (2007), e484. by Andreas Sundquist, Mostafa Ronaghi, Haixu Tang, Pavel Pevzner, Serafim Batzoglou posted to short-read sequencing assembly by n00c on 2009-10-01 16:14:34 as along with 12 people and 1 group APRegier jessopher natstreet druvus idoerg dakelley GustavoLacerda orzenil guhjy azazello nedwards iris42 gatech-compgenomics
	CAP3: A DNA Sequence Assembly Program [My Copy] Genome Research, Vol. 9, No. 9. (1 September 1999), pp. 868-877. by Xiaoqiu Huang, Anup Madan posted to tool software dna cap3 assembly by n00c on 2009-10-01 16:09:21 as along with 5 people nwpuzebra Neeperando dakelley gpappas dmp
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to method bioinformatics assembly by operon on 2009-09-30 00:56:51 as along with 17 people and 2 groups fstrozzi kiekyon torfinnnome dakelley jamselem err129 djkt darian APRegier thegoose danmaclean stajich natstreet neils druvus GustavoLacerda avilella Mycology Journal picks
	Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (26 September 2008), e1000186. by Steven L. Salzberg, Daniel D. Sommer, Daniela Puiu, Vincent T. Lee posted to short-read genome bacterial assembly assembler by n00c on 2009-09-28 15:27:39 as along with 16 people and 5 groups operon michaelbarton azazello Thaverkamp dakelley sconlan GustavoLacerda treangen natstreet antonkratz druvus vaulot djkt Katje stajich semrich BergmanLab Papers recommended by the Roscoff Plankton Group iSEEM microbiology_nijmegen Mycology
	De novo fragment assembly with short mate-paired reads: Does the read length matter? [My Copy] Genome Research, Vol. 19, No. 2. (3 February 2009), pp. 336-346. by Mark J. Chaisson, Dumitru Brinza, Pavel A. Pevzner posted to paired-ends de-novo assembly assembler by n00c on 2009-09-28 15:25:38 as along with 17 people and 1 group carlk APRegier jandot jonilaserson natstreet dakelley jessopher orzenil AaronDarling sphsmith jasontsai nmohelli jbhiatt druvus hpaces GustavoLacerda stajich Mycology
	Short read fragment assembly of bacterial genomes [My Copy] Genome Research, Vol. 18, No. 2. (1 February 2008), pp. 324-330. by Mark J. Chaisson, Pavel A. Pevzner posted to tool software short-read genome eulerian assembly assembler by n00c on 2009-09-28 15:23:30 as along with 17 people pachorip APRegier thegoose2 dakelley Neeperando hpaces idoerg druvus jasontsai acn orzenil azazello GustavoLacerda dandaman caseybrown iris42 tharris
	ALLPATHS: De novo assembly of whole-genome shotgun microreads [My Copy] Genome Research, Vol. 18, No. 5. (13 May 2008), pp. 810-820. by Jonathan Butler, Iain MacCallum, Michael Kleber, et al.Ilya A. Shlyakhter, Matthew K. Belmonte, Eric S. Lander, Chad Nusbaum, David B. Jaffe posted to tool software de-novo assembly allpaths algorithm by n00c on 2009-09-28 15:17:37 as along with 22 people and 1 group carlk jmanning2k APRegier pachorip jonilaserson operon thegoose2 natstreet AaronDarling mhz dakelley druvus stajich azazello hpaces tharris jwhitney iris42 Neeperando sharpton GustavoLacerda GeeSharpMinor Mycology
	PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2514-2521. by Yangho Chen, Tade Souaiaia, Ting Chen posted to software method bioinformatics assembly by operon on 2009-09-27 16:52:09 as along with 7 people and 1 group dswan fishtank polivares n00c torfinnnome druvus natstreet BergmanLab
	Targeted capture and massively parallel sequencing of 12 human exomes [My Copy] Nature, Vol. 461, No. 7261. (16 August 2009), pp. 272-276. by Sarah B. Ng, Emily H. Turner, Peggy D. Robertson, et al.Steven D. Flygare, Abigail W. Bigham, Choli Lee, Tristan Shaffer, Michelle Wong, Arindam Bhattacharjee, Evan E. Eichler, Michael Bamshad, Deborah A. Nickerson, Jay Shendure posted to sequencing bioinformatics assembly by jmanning2k on 2009-09-25 16:26:18 as along with 21 people and 1 group liqbbi chvlyl ongenetics psique fenghezi n00c dswan torfinnnome GeeSharpMinor pkonings neils djkt daforerog PabloMarin stubrown danmaclean xingxu vplagnol druvus jandot frohike Journal picks
	Hydrogen-Bonding-Assisted Self-Assembly: Monodisperse Hollow Nanoparticles Made Easy [My Copy] Journal of the American Chemical Society, Vol. 131, No. 38. (30 September 2009), pp. 13594-13595. by Zaicheng Sun, Feng Bai, Huimeng Wu, Samantha K. Schmitt, Daniel M. Boye, Hongyou Fan posted to self polymer nano assembly by julienburgin on 2009-09-25 11:25:39 as

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sequencing	82
genome	75
software	61
454	55
bioinformatics	55
review	42
genomics	38
thesis	38
short-reads	37
solexa	37
next_generation	35
structure	35
algorithm	34
phage	31
hiv	28
capsid	27
virus	27
short-read	26
theory	25
ngs	24
read	22
alignment	19
evolution	19
illumina	19
short	19
community	17
dna	17
self	17
bacteria	16
optical	16
method	15
est	14
focus	14
metagenomics	14
methods	14
complex	13
ht_sequencing	13
protein	13
shortread	13
apobec	12
sequence	12
wgs	11
2008	10
kinetics	10
nanoparticles	10
rna	10
srs	10
tweezers	10
ais	9
fragment	9
mapping	9
targeting	9
experiment	8
nextgen	8
pressure	8
radiation	8
resequencing	8
tool	8
transcriptome	8
ankg	7
annotation	7
assembler	7
de-bruijn	7
de-novo	7
dynamics	7
gag	7
haplotype	7
polymer	7
secretion	7
short-read-assembly	7
subassemblypaper	7
validation	7
vif	7
399	6
bacterial	6
molecular	6
nextgensequencing	6
pf454-paper	6
pilus	6
post-assembly	6
replication	6
trait	6
velvet	6
visualisation	6
celera	5
comparative	5
de	5
ecology	5
gold	5
hcv	5
hts	5
novo	5
parallel	5
recombination	5
ribosome	5
rna-seq	5
savignyi	5
scaffolding	5
surface	5
virulence	5

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