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Tag bacteria [662 articles]

Recent papers classified by the tag bacteria.
  • Agrobacterium is not alone: gene transfer to plants by viruses and other bacteria.
    Trends Plant Sci, Vol. 11, No. 1. (January 2006), pp. 1-4.
    by SM Chung, M Vaidya, T Tzfira
    posted to agrobacterium bacteria gene method not plant review transfer tumefaciens virus by xico on 2006-03-19 19:54:52 as *** along with 1 group WetBiology
  • The role of RNA stability during bacterial stress responses and starvation. Minireview
    Environmental Microbiology, Vol. 2, No. 4. (2000), pp. 355-365.
    by Kathy Takayama, Staffan Kjelleberg
    posted to bacteria mrna stability by wxg119 on 2006-06-13 17:04:11 as **
  • Poly(A) polymerase activity and RNA polyadenylation in Streptomyces coelicolor A3(2)
    Molecular Microbiology, Vol. 40, No. 5. (2001), pp. 1155-1164.
    by Patricia Bralley, George H Jones
    posted to bacteria mrna polya by wxg119 on 2006-06-13 16:39:01 as **
  • Stationary Phase-Specific mRNAs inEscherichia coliAre Polyadenylated
    Biochemical and Biophysical Research Communications, Vol. 239, No. 1. (9 October 1997), pp. 46-50.
    by Gong-Jie Cao, Nilima Sarkar
    posted to bacteria mrna polya by wxg119 on 2006-06-13 16:10:02 as **
  • Complexation of Uranium by Cells and S-Layer Sheets of Bacillus sphaericus JG-A12
    Appl. Environ. Microbiol., Vol. 71, No. 9. (1 September 2005), pp. 5532-5543.
    by Mohamed L Merroun, Johannes Raff, Andre Rossberg, Christoph Hennig, Tobias Reich, Sonja Selenska-Pobell
    posted to accumulation bacteria by uranium by wxg119 on 2006-06-28 16:36:17 as **
  • The Generation of Promoter-Mediated Transcriptional Noise in Bacteria
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000109.
    by Namiko Mitarai, Ian B Dodd, Michael T Crooks, Kim Sneppen
    posted to expression bacteria by waszak on 2008-07-13 22:15:14 as ** along with 2 people jjray Ema
  • Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data.
    Infect Genet Evol, Vol. 6, No. 2. (March 2006), pp. 97-112.
    by M Pérez-Losada, EB Browne, A Madsen, T Wirth, RP Viscidi, KA Crandall
    posted to bacteria by vplagnol on 2006-12-18 17:35:00 as ** along with 2 people ryanraaum CharlesM
  • Genome-wide detection and analysis of homologous recombination among sequenced strains of Escherichia coli
    Genome Biology, Vol. 7 (31 May 2006), R44.
    by Bob Mau, Jeremy D Glasner, Aaron E Darling, Nicole T Perna
    posted to bacteria by vplagnol on 2006-12-18 17:32:48 as ** along with 2 people jmeppley AaronDarling
  • The Influence of Mutation, Recombination, Population History, and Selection on Patterns of Genetic Diversity in Neisseria meningitidis
    Molecular Biology and Evolution, Vol. 22, No. 3. (March 2005), pp. 562-569.
    by KA Jolley, DJ Wilson, P Kriz, G Mcvean, MCJ Maiden
    posted to bacteria by vplagnol on 2006-12-18 17:31:15 as ** along with 1 person treangen
  • Recombination within natural populations of pathogenic bacteria: Short-term empirical estimates and long-term phylogenetic consequences
    PNAS, Vol. 98, No. 1. (2 January 2001), pp. 182-187.
    by Edward J Feil, Edward C Holmes, Debra E Bessen, Man-Suen Chan, Nicholas P Day, Mark C Enright, Richard Goldstein, Derek W Hood, Awdhesh Kalia, Catrin E Moore, Jiaji Zhou, Brian G Spratt
    posted to bacteria by vplagnol on 2006-12-18 17:29:54 as ** along with 3 people jmeppley CharlesM mrthvzqz
  • eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data.
    J Bacteriol, Vol. 186, No. 5. (March 2004), pp. 1518-1530.
    by EJ Feil, BC Li, DM Aanensen, WP Hanage, BG Spratt
    posted to bacteria by vplagnol on 2006-12-18 17:28:26 as ** along with 3 people bakakaj Xavier CharlesM
  • Molecular genetic anatomy of inter- and intraserotype variation in the human bacterial pathogen group A Streptococcus
    PNAS, Vol. 103, No. 18. (2 May 2006), pp. 7059-7064.
    by Stephen B Beres, Ellen W Richter, Michal J Nagiec, Paul Sumby, Stephen F Porcella, Frank R Deleo, James M Musser
    posted to bacteria by vplagnol on 2006-12-18 17:25:10 as ** along with 1 person Xavier
  • Hazard identification in swine slaughter with respect to foodborne bacteria.
    International journal of food microbiology, Vol. 30, No. 1-2. (June 1996), pp. 9-25.
    by E Borch, T Nesbakken, H Christensen
    posted to swine haccp foodborne bacteria by virag on 2008-05-09 07:18:12 as **
  • Biology of Wolbachia
    Annual Review of Entomology, Vol. 42, No. 1. (1997), pp. 587-609.
    by John H Werren
    posted to arthropod bacteria genetic insect microorganism parasite pathogen reproduction symbiont wolbachia by vhphys on 2008-03-13 13:28:43 as **
  • Phylogeny of the arthropod endosymbiont Wolbachia based on the wsp gene
    Insect Molecular Biology, Vol. 8, No. 3. (1999), pp. 399-408.
    by MMM van Meer, J Witteveldt, R Stouthamer
    posted to arthropod bacteria endosymbiont genetic insect parasite phylogeny wolbachia wsp by vhphys on 2008-03-13 13:23:48 as **
  • Microorganisms associated with chromosome destruction and reproductive isolation between two insect species
    Nature, Vol. 346, No. 6284. (1990), pp. 558-560.
    by Johannes A Breeuwer, John H Werren
    posted to bacteria chromosome genetic insect isolation mating parasite protein reproduction wolbachia by vhphys on 2008-03-13 13:21:44 as **
  • Evolution and Phylogeny of Wolbachia: Reproductive Parasites of Arthropods
    Proceedings: Biological Sciences, Vol. 261, No. 1360. (1995), pp. 55-63.
    by John H Werren, Wan Zhang, Li R Guo
    posted to arthropods bacteria insects parasite phylogenie wolbachia by vhphys on 2008-03-11 13:41:33 as **
  • Microbial diversity and the genetic nature of microbial species
    Nature Reviews Microbiology, Vol. 6, No. 6., pp. 431-440.
    by Mark Achtman, Michael Wagner
    posted to species genome diversity bacteria by vaulot on 2008-07-17 11:22:41 as *** along with 2 people and 4 groups jlgreen skato_toyaku iSEEM Green Lab Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Abundance and diversity of microbial life in ocean crust
    Nature, Vol. 453, No. 7195., pp. 653-656.
    by Cara M Santelli, Beth N Orcutt, Erin Banning, Wolfgang Bach, Craig L Moyer, Mitchell L Sogin, Hubert Staudigel, Katrina J Edwards
    posted to ocean card-fish bacteria 16s by vaulot on 2008-06-21 00:40:50 as read along with 1 person and 4 groups jlgreen iSEEM Green Lab Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • From the Cover: A latitudinal diversity gradient in planktonic marine bacteria
    Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7774-7778.
    by Jed A Fuhrman, Joshua A Steele, Ian Hewson, Michael S Schwalbach, Mark V Brown, Jessica L Green, James H Brown
    posted to diversity bacteria 16s by vaulot on 2008-07-17 10:42:35 as *** along with 2 people and 4 groups jlgreen skato_toyaku iSEEM Green Lab Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Widespread distribution of proteorhodopsins in freshwater and brackish ecosystems.
    The ISME journal (27 March 2008)
    by Nof Atamna-Ismaeel, Gazalah Sabehi, Itai Sharon, Karl-Paul P Witzel, Matthias Labrenz, Klaus Jürgens, Tamar Barkay, Maayke Stomp, Jef Huisman, Oded Beja
    posted to proteorhodopsin ocean distribution bacteria by vaulot on 2008-04-28 23:34:28 as * along with 2 groups Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • The small genome of an abundant coastal ocean methylotroph.
    Environmental microbiology (3 April 2008)
    by Stephen J J Giovannoni, Darin H H Hayakawa, H James J Tripp, Ulrich Stingl, Scott A A Givan, Jang-Cheon C Cho, Hyun-Myung M Oh, Joshua B B Kitner, Kevin L L Vergin, Michael S S Rappé
    posted to genome bacteria by vaulot on 2008-04-28 23:30:47 as * along with 2 people and 2 groups vrich operon Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
    Nature Reviews Microbiology, Vol. 6, No. 5., pp. 339-348.
    by Rudolf Amann, Bernhard M Fuchs
    posted to probes fish card-fish bacteria 18s by vaulot on 2008-04-28 23:23:34 as *** along with 4 people and 3 groups jlgreen Huub_odc vrich Katje Papers recommended by the Roscoff Plankton Group Microbial-Ecology microbiology_nijmegen
  • From the Cover: Extreme polyploidy in a large bacterium
    Proceedings of the National Academy of Sciences, Vol. 105, No. 18. (6 May 2008), pp. 6730-6734.
    by Jennifer E Mendell, Kendall D Clements, Howard J Choat, Esther R Angert
    posted to genome bacteria by vaulot on 2008-05-20 03:45:31 as *** along with 4 people and 3 groups dbikard alexisfjdufresne echinotrix neils Centre de Recherches Interdisciplinaires Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • From the Cover: Microbial community gene expression in ocean surface waters
    Proceedings of the National Academy of Sciences, Vol. 105, No. 10. (11 March 2008), pp. 3805-3810.
    by Jorge Frias-Lopez, Yanmei Shi, Gene W Tyson, Maureen L Coleman, Stephan C Schuster, Sallie W Chisholm, Edward F Delong
    posted to picoplankton ocean mrna metagenomics bacteria by vaulot on 2008-04-28 02:26:31 as read along with 3 people and 3 groups jlgreen mjetten tmmurali iSEEM Green Lab microbiology_nijmegen
  • Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics
    Proceedings of the National Academy of Sciences (8 May 2008), 0711303105.
    by Annelie Pernthaler, Anne E Dekas, Titus C Brown, Shana K Goffredi, Tsegereda Embaye, Victoria J Orphan
    posted to probes methods metagenomics fish bacteria 16s by vaulot on 2008-05-25 07:33:33 as ** along with 1 person and 2 groups skato_toyaku Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities
    Appl. Environ. Microbiol., Vol. 73, No. 10. (15 May 2007), pp. 3205-3214.
    by Mircea Podar, Carl B Abulencia, Marion Walcher, Don Hutchison, Karsten Zengler, Joseph A Garcia, Trevin Holland, David Cotton, Loren Hauser, Martin Keller
    posted to wga genome fish bacteria 16s by vaulot on 2008-05-25 07:25:01 as read along with 2 people and 2 groups vrich Olaf_Ilzins Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Fluorescence in situ hybridization-flow cytometry-cell sorting-based method for separation and enrichment of type I and type II methanotroph populations.
    Applied and environmental microbiology, Vol. 72, No. 6. (June 2006), pp. 4293-4301.
    by MG Kalyuzhnaya, R Zabinsky, S Bowerman, DR Baker, ME Lidstrom, L Chistoserdova
    posted to wga flow_cytometry fish bacteria 16s by vaulot on 2008-05-25 07:18:54 as ** along with 2 groups Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • SAR11 marine bacteria require exogenous reduced sulphur for growth
    Nature (12 March 2008)
    by James H Tripp, Joshua B Kitner, Michael S Schwalbach, John WH Dacey, Larry J Wilhelm, Stephen J Giovannoni
    posted to sulfur sar11 ocean genome bacteria by vaulot on 2008-05-08 23:56:34 as read along with 2 people and 2 groups mblwhoi Thaverkamp Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Microbial Biogeography: From Taxonomy to Traits
    Science, Vol. 320, No. 5879. (23 May 2008), pp. 1039-1043.
    by Jessica L Green, Brendan J Bohannan, Rachel J Whitaker
    posted to taxonomy bacteria by vaulot on 2008-05-26 02:15:36 as **** along with 5 people and 5 groups dbensasson dbikard stajich jdelcampo djkt iSEEM Centre de Recherches Interdisciplinaires Papers recommended by the Roscoff Plankton Group Berkeley Mycology Microbial-Ecology
  • Bacterial diversity in the oxygen minimum zone of the eastern tropical South Pacific.
    Environmental microbiology (18 February 2008)
    by Heike Stevens, Osvaldo Ulloa
    posted to pacific omz diversity chile bacteria 16s by vaulot on 2008-04-30 07:03:43 as *** along with 1 person and 4 groups mjetten Papers recommended by the Roscoff Plankton Group Microbial-Ecology anammox microbiology_nijmegen
  • Complete genome of the uncultured Termite Group 1 bacteria in a single host protist cell
    Proceedings of the National Academy of Sciences, Vol. 105, No. 14. (8 April 2008), pp. 5555-5560.
    by Yuichi Hongoh, Vineet K Sharma, Tulika Prakash, Satoko Noda, Todd D Taylor, Toshiaki Kudo, Yoshiyuki Sakaki, Atsushi Toyoda, Masahira Hattori, Moriya Ohkuma
    posted to wga symbiosis protist metagenomics genome bacteria 451 by vaulot on 2008-05-16 07:30:53 as *** along with 2 people and 2 groups skato_toyaku Pascalichouchou Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Multiple displacement amplification as a pre-polymerase chain reaction (pre-PCR) to process difficult to amplify samples and low copy number sequences from natural environments
    Environmental Microbiology, Vol. 7, No. 7. (July 2005), pp. 1024-1028.
    by Juan M Gonzalez, Carmen C Portillo, Cesareo Saiz-Jimenez
    posted to wga pcr metagenomics eukaryote bacteria by vaulot on 2008-05-16 06:31:32 as *** along with 2 groups Papers recommended by the Roscoff Plankton Group Microbial-Ecology
  • Relationship among acidophilic bacteria from diverse environments as determined by randomly amplified polymorphic DNA analysis (RAPD)
    World Journal of Microbiology and Biotechnology, Vol. 21, No. 5. (July 2005), pp. 645-648.
    by Tanveer Akbar, Kalsoom Akhtar, Muhammad Ghauri, Munir Anwar, Moazur Rehman, Mehboobur Rehman, Yusuf Zafar, Ahmad Khalid
    posted to relationship bacteria among by ubtex on 2007-01-26 10:39:08 as ****
  • Influence of temperature on growth rate and competition between two psychrotolerant Antarctic bacteria: low temperature diminishes affinity for substrate uptake.
    Appl. Environ. Microbiol., Vol. 60, No. 6. (1 June 1994), pp. 1984-1992.
    by DB Nedwell, M Rutter
    posted to articles bacteria competition growth resource temperature by tomrevilla on 2008-03-24 16:55:45 as ***
  • Influence of changing temperature on growth rate and competition between two psychrotolerant Antarctic bacteria: competition and survival in non-steady-state temperature environments.
    Appl. Environ. Microbiol., Vol. 60, No. 6. (1 June 1994), pp. 1993-2002.
    by M Rutter, DB Nedwell
    posted to articles bacteria competition growth resource temperature by tomrevilla on 2008-03-24 16:48:53 as **
  • The half-saturation coefficient for dissolved oxygen: A dynamic method for its determination and its effect on dual species competition
    Biotechnology and Bioengineering, Vol. 25, No. 2. (1983), pp. 403-416.
    by Oliver J Hao, Michael G Richard, David Jenkins, Harvey W Blanch
    posted to articles bacteria competition continuous culture half-saturation by tomrevilla on 2008-03-24 16:34:23 as ***
  • Selection by temperature of nitrate-reducing bacteria from estuarine sediments: species composition and competition for nitrate
    FEMS Microbiology Ecology, Vol. 23, No. 1. (1997), pp. 11-22.
    by BG Ogilvie, M Rutter, DB Nedwell
    posted to uptake temperature specific selection nitrate-reducing nitrate bacteria affinity articles denitrification by tomrevilla on 2008-03-25 09:58:08 as **
  • Refuting phylogenetic relationships
    Biology Direct, Vol. 1 (06 September 2006), 26.
    by James Bucknam, Yan Boucher, Eric Bapteste
    posted to archaea bacteria pca phylogeny by tny on 2006-09-06 17:31:08 as ** along with 1 person aprasad
  • An analysis of determinants of amino acids substitution rates in bacterial proteins.
    Mol Biol Evol, Vol. 21, No. 1. (January 2004), pp. 108-116.
    by EP Rocha, A Danchin
    posted to bacteria substitution_rate by tny on 2006-06-19 05:55:40 as ** along with 4 people and 1 group skumagai bjorns penka jpoyatos Nie
  • Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
    Nature Genetics, Vol. 37, No. 12. (20 November 2005), pp. 1372-1375.
    by Csaba Pál, Balázs Papp, Martin J Lercher
    posted to bacteria hgt network protein by tny on 2005-12-13 10:22:14 as ** along with 3 people and 1 group michaelbarton icases knaseanka TNT
  • Evolutionary Origins of Genomic Repertoires in Bacteria.
    PLoS Biol, Vol. 3, No. 5. (5 April 2005)
    by Emmanuelle Lerat, Vincent Daubin, Howard Ochman, Nancy A A Moran
    posted to bacteria phylogeny by tny on 2006-08-03 18:53:46 as ** along with 5 people and 1 group operon jwortman treangen manzanita kinestetika microbiology_nijmegen
  • A hidden metabolic pathway exposed.
    Proc Natl Acad Sci U S A (4 April 2006)
    by Andrei Osterman
    posted to bacteria experiment pathway by tny on 2006-04-12 06:01:01 as ** along with 2 people and 1 group nickluscombe aswin EBI-regulation
  • The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
    PNAS, Vol. 97, No. 10. (9 May 2000), pp. 5528-5533.
    by JS Edwards, BO Palsson
    posted to bacteria metabolism network pathway by tny on 2006-04-10 08:35:32 as ** along with 1 person fishtank
  • GENOME-SCALE MODELS OF MICROBIAL CELLS: EVALUATING THE CONSEQUENCES OF CONSTRAINTS
    Nat Rev Micro, Vol. 2, No. 11. (November 2004), pp. 886-897.
    by Nathan D Price, Jennifer L Reed, Bernhard O Palsson
    posted to bacteria pathway by tny on 2006-04-10 07:28:29 as ** along with 2 people and 1 group JeremyZucker Evangelia MetabolicModeling
  • Approaches to prokaryotic biodiversity: a population genetics perspective
    Environmental Microbiology, Vol. 4, No. 11. (2002), pp. 628-633.
    by Francisco R Valera
    posted to bacteria microbiology population by Thaverkamp on 2008-04-08 09:00:54 as ** along with 1 person and 1 group jmeppley Microbial-Ecology
  • The bacterial species definition in the genomic era.
    Philos Trans R Soc Lond B Biol Sci, Vol. 361, No. 1475. (29 November 2006), pp. 1929-1940.
    by KT Konstantinidis, A Ramette, JM Tiedje
    posted to bacteria bioinformatics genomics species by Thaverkamp on 2008-04-08 08:59:36 as ** along with 2 people and 2 groups jmeppley kinestetika Microbial-Ecology microbiology_nijmegen
  • Bacterial incorporation of relict carbon in the hydrothermal environment of Guaymas Basin
    Geochimica et Cosmochimica Acta, Vol. 69, No. 23. (1 December 2005), pp. 5477-5486.
    by A Pearson, JS Seewald, TI Eglinton
    posted to bacteria guaymas hydrothermal by tak_echigo on 2006-05-09 02:14:43 as **
  • Nutrition and cancer: a review of the evidence for an anti-cancer diet.
    Nutr J, Vol. 3 (20 October 2004)
    by MS Donaldson
    posted to flora diet cancer bowel bacteria by SuzanneGeorge on 2008-07-15 11:20:19 as ***** along with 3 people and 3 groups imouthesmp PeterDAdamo leSyl Boydian_Society Nutritional_Polymorphisms The_Individualist
  • Mediterranean diet or extended fasting's influence on changing the intestinal microflora, immunoglobulin A secretion and clinical outcome in patients with rheumatoid arthritis and fibromyalgia: an observational study
    BMC Complementary and Alternative Medicine, Vol. 5, No. 1. (2005)
    by Andreas Michalsen, Markus Riegert, Rainer Ludtke, Marcus Backer, Jost Langhorst, Myriam Schwickert, Gustav Dobos
    posted to rheumatoid mediterranean flora fibromyalgia fasting diet bowel bacteria arthritis by SuzanneGeorge on 2008-07-15 11:05:46 as **
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