Tag benchmark [at least 200 articles] Export

Recent papers classified by the tag benchmark.

	Substantial biases in ultra-short read data sets from high-throughput DNA sequencing [My Copy] Nucleic Acids Research, Vol. 36, No. 16. (1 September 2008), e105. by Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, Heinz Himmelbauer posted to high-throughput-sequencing benchmark by heliopais on 2009-11-27 10:02:40 as along with 19 people and 1 group hzoltan jonilaserson n00c druvus orzenil burak woodson8 sameersoi humburg poschm polivares Huub_odc usagi-kirin inesdesantiago jfr natstreet dakelley caseybrown GustavoLacerda microbiology_nijmegen
	A detailed analysis of MediaBench [My Copy] Signal Processing Systems, 1999. SiPS 99. 1999 IEEE Workshop on (06 August 2002), pp. 448-455. by B. Bishop, T. P. Kelliher, M. J. Irwin posted to mediabench embedded benchmark by tavlima on 2009-11-26 03:52:15 as
	MiBench: A free, commercially representative embedded benchmark suite [My Copy] Workload Characterization, 2001. WWC-4. 2001 IEEE International Workshop on In Workload Characterization, 2001. WWC-4. 2001 IEEE International Workshop on (2001), pp. 3-14. by M. R. Guthaus, J. S. Ringenberg, D. Ernst, T. M. Austin, T. Mudge, R. B. Brown posted to mibench embedded benchmark by tavlima on 2009-11-26 03:45:45 as along with 2 people hannibal_08 alphabetagamma
	The Star Schema Benchmark and Augmented Fact Table Indexing [My Copy] Performance Evaluation and Benchmarking (2009), pp. 237-252. by Patrick O’Neil, Elizabeth O’Neil, Xuedong Chen, Stephen Revilak posted to tpc-h starschema ssb mdc datacube cube clustering benchmark by myui on 2009-11-25 20:00:17 as
	A Benchmark Characterization of the EEMBC Benchmark Suite [My Copy] Micro, IEEE, Vol. 29, No. 5. (10 November 2009), pp. 18-29. by Jason A. Poovey, Thomas M. Conte, Markus Levy, Shay Gal-On posted to benchmark architecture_comparison by mmuecke on 2009-11-19 15:39:33 as
	A general modular framework for gene set enrichment analysis [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (03 February 2009), 47. by Marit Ackermann, Korbinian Strimmer posted to geneset enrichment comparison benchmark by ptrobajo on 2009-11-18 20:29:39 as along with 17 people and 1 group zufar srp33 vingron dipenps shikin arjun_citeulike guhjy pk506 aviad_work thomaskelder ydhwang rdiaz kshameer renatomilani dswan cmzmasek RamuAnandakrishnan Bioinformatics
	Rodinia: A benchmark suite for heterogeneous computing [My Copy] Workload Characterization, 2009. IISWC 2009. IEEE International Symposium on In IEEE International Symposium on Workload Characterization, 2009. IISWC 2009. (30 October 2009), pp. 44-54. by Shuai Che, Michael Boyer, Jiayuan Meng, et al.David Tarjan, Jeremy W. Sheaffer, Sang-Ha Lee, Kevin Skadron posted to performance_modelling performance_analysis benchmark by mmuecke on 2009-11-12 15:24:31 as
	Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling [My Copy] PLoS ONE, Vol. 4, No. 7. (28 July 2009), e6323. by Nicola Palmieri, Christian Schlötterer posted to readmapping benchmark by darian on 2009-11-11 10:27:20 as along with 16 people and 3 groups torfinnnome hzoltan debasis mqbphcw3 stubrown Thaverkamp PabloMarin jasontsai ThomasDOtto heliopais guhjy cisevol n00c natstreet druvus jbhiatt Journal picks JLab BergmanLab
	A Branch and Bound Algorithm for the Stability Number of a Sparse Graph [My Copy] INFORMS JOURNAL ON COMPUTING, Vol. 10, No. 4. (1 January 1998), pp. 438-447. by E. C. Sewell posted to exact clique benchmark by renatocarmo on 2009-11-05 14:53:10 as
	Simple and Fast: Improving a Branch-And-Bound Algorithm for Maximum Clique [My Copy] Algorithms — ESA 2002 (2002), pp. 47-86. by Torsten Fahle posted to exact clique benchmark by renatocarmo on 2009-11-05 14:46:02 as
	Critical Assessment of the Performance of Density Functional Methods for Several Atomic and Molecular Properties [My Copy] Journal of Chemical Theory and Computation, Vol. 3, No. 2. (1 March 2007), pp. 407-433. by Kevin E. Riley, Bryan T. Op't Holt, Kenneth M. Merz posted to dft critical-assessment benchmark by zfekete on 2009-11-05 10:23:10 as along with 1 person daevans
	RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. [My Copy] Genome research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to rna-seq high-throughput-sequencing benchmark by heliopais on 2009-11-03 17:02:48 as along with 46 people and 2 groups cthachuk hzoltan jwfoley debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy felsani coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda SIMR bioinformatics Mycology
	Transcriptome sequencing of the Microarray Quality Control (MAQC) RNA reference samples using next generation sequencing [My Copy] BMC Genomics, Vol. 10, No. 1. (12 June 2009), 264. by Shrinivasrao Mane, Clive Evans, Kristal Cooper, et al.Oswald Crasta, Otto Folkerts, Stephen Hutchison, Timothy Harkins, Danielle T. Mieg, Jean T. Mieg, Roderick Jensen posted to microrarray high-throughput-sequencing benchmark 454 by heliopais on 2009-11-03 16:41:23 as along with 5 people daforerog GeeSharpMinor guhjy natstreet fenghezi
	Measuring differential gene expression by short read sequencing: quantitative comparison to 2-channel gene expression microarrays [My Copy] BMC Genomics, Vol. 10, No. 1. (12 May 2009), 221. by Joshua Bloom, Zia Khan, Leonid Kruglyak, Mona Singh, Amy Caudy posted to microarray high-throughput-sequencing benchmark by heliopais on 2009-11-03 15:20:05 as along with 9 people and 1 group hzoltan GustavoLacerda GeeSharpMinor n00c TRHvidsten natstreet druvus dswan neils Bioinformatics
	A comparative study of different machine learning methods on microarray gene expression data [My Copy] BMC Genomics, Vol. 9, No. Suppl 1. (2008) by Mehdi Pirooznia, Jack Yang, Mary Q. Yang, Youping Deng posted to study machine learning comparative classification benchmark by dolchan on 2009-10-29 17:16:35 as along with 7 people guhjy imina jfr klo aviad_work renatomilani frohike
	Benchmarking regulatory network reconstruction with GRENDEL [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 801-807. by Brian C. Haynes, Michael R. Brent posted to regulation network inference grendel gene benchmark by dolchan on 2009-10-29 17:11:32 as along with 7 people tmarscha tonamswish TRHvidsten APRegier roys rdiaz imina
	Using critical sets to solve the maximum independent set problem [My Copy] Operations Research Letters, Vol. 35, No. 4. (July 2007), pp. 519-524. by S. Butenko, S. Trukhanov posted to exact clique benchmark by renatocarmo on 2009-10-28 15:21:09 as
	A generalization of the Hoffman - Lovász upper boundon the independence number of a regular graph [My Copy] Annals of Operations Research, Vol. 81, No. 0. (1 June 1998), pp. 307-320. by Carlos Luz, Domingos Cardoso posted to exact cache benchmark by renatocarmo on 2009-10-28 15:15:45 as
	An exact algorithm for the maximum stable set problem [My Copy] Computational Optimization and Applications, Vol. 3, No. 3. (1 July 1994), pp. 243-258. by Carlo Mannino, Antonio Sassano posted to exact clique benchmark by renatocarmo on 2009-10-28 15:07:16 as
	Test case generators and computational results for the maximum clique problem [My Copy] Journal of Global Optimization, Vol. 3, No. 4. (1 December 1993), pp. 463-482. by Jonas Hasselberg, Panos M. Pardalos, George Vairaktarakis posted to exact clique benchmark by renatocarmo on 2009-10-28 14:39:29 as
	Optimization principles and application performance evaluation of a multithreaded GPU using CUDA [My Copy] In PPoPP '08: Proceedings of the 13th ACM SIGPLAN Symposium on Principles and practice of parallel programming (2008), pp. 73-82. by Shane Ryoo, Christopher I. Rodrigues, Sara S. Baghsorkhi, Sam S. Stone, David B. Kirk, Wen mei posted to optimization gpu cuda benchmark by rschulz on 2009-10-27 08:51:47 as along with 10 people and 1 group cntcntcnt yingbo elsantosneto Jingbo billiejoe jsenn laurobeltrao mamadoudiao coutinho naoya Speed
	Workload-Specific File System Benchmarks [My Copy] (2001) by Keith A. Smith posted to storage filesystem benchmark by dmeister on 2009-10-20 16:10:21 as
	Harnessing the strengths of anytime algorithms for constant data streams [My Copy] Data Mining and Knowledge Discovery, Vol. 19, No. 2. (1 October 2009), pp. 245-260. by Philipp Kranen, Thomas Seidl posted to cds benchmark by beete on 2009-10-15 11:34:33 as
	An XML transaction processing benchmark [My Copy] In SIGMOD '07: Proceedings of the 2007 ACM SIGMOD international conference on Management of data (2007), pp. 937-948. by Matthias Nicola, Irina Kogan, Berni Schiefer posted to xml benchmark by moonhouse on 2009-10-14 13:41:30 as along with 2 people gerold myui
	XMark: A Benchmark for XML Data Management [My Copy] In In VLDB (2002), pp. 974-985. by Albrecht Schmidt, Florian Waas, Martin Kersten, Michael J. Carey, Ioana Manolescu, Ralph Busse posted to xml xmark benchmark by moonhouse on 2009-10-14 12:22:16 as
	The Michigan Benchmark: Towards XML Query Performance Diagnostics [My Copy] In Proc. VLDB Conference, Vol. 31 (2003) by Kanda Runapongsa, Jignesh M. Patel, H. V. Jagadish, Yun Chen, Shurug Al-Khalifa posted to xml microbenchmark michigan_benchmark benchmark by moonhouse on 2009-10-14 12:13:35 as
	What makes the differences: benchmarking XML database implementations [My Copy] ACM Trans. Internet Technol., Vol. 5, No. 1. (February 2005), pp. 154-194. by Hongjun Lu, Jeffrey X. Yu, Guoren Wang, et al.Shihui Zheng, Haifeng Jiang, Ge Yu, Aoying Zhou posted to xml benchmark by moonhouse on 2009-10-14 10:46:31 as along with 3 people lendle xml-isy myui
	XMach-1: A Benchmark for XML Data Management [My Copy] In Datenbanksysteme in B\"{u}ro, Technik und Wissenschaft (BTW), 9. GI-Fachtagung, (2001), pp. 264-273. by Timo Böhme, Erhard Rahm posted to xml xmach benchmark by moonhouse on 2009-10-14 10:39:18 as
	Why and how to benchmark XML databases [My Copy] SIGMOD Rec., Vol. 30, No. 3. (2001), pp. 27-32. by Albrecht Schmidt, Florian Waas, Martin Kersten, et al.Daniela Florescu, Michael J. Carey, Ioana Manolescu, Ralph Busse posted to xml benchmark by moonhouse on 2009-10-14 09:39:41 as
	XBench Benchmark and Performance Testing of XML DBMSs [My Copy] In ICDE '04: Proceedings of the 20th International Conference on Data Engineering (2004), 621. by Benjamin B. Yao, M. Tamer Özsu, Nitin Khandelwal posted to xml xbench benchmark by moonhouse on 2009-10-14 09:14:58 as
	Theoretical Determination of the Dissociation Energy of Molecular Hydrogen [My Copy] Journal of Chemical Theory and Computation, Vol. 0, No. 0. (0000) by Konrad Piszczatowski, Grzegorz Łach, Michal Przybytek, Jacek Komasa, Krzysztof Pachucki, Bogumil Jeziorski posted to hydrogen_molecule benchmark by Gershom on 2009-10-02 11:12:34 as
	Benchmarking Blunders and Things That Go Bump in the Night [My Copy] (21 Apr 2004) by Neil J. Gunther posted to testing test performance_testing load_test caveats best_practices benchmark _2004 by JoeVinegar on 2009-09-28 11:47:36 as along with 1 person ljcamargos
	Randomized benchmarking of single and multi-qubit control in liquid-state NMR quantum information processing [My Copy] (28 Aug 2008) by C. A. Ryan, M. Laforest, R. Laflamme posted to quantum_tomography benchmark by xom on 2009-09-21 15:28:23 as along with 3 people viellieb eswar_physics jaeseung
	Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks [My Copy] BMC Systems Biology, Vol. 3, No. 1. (2009), 49. by Tom Michoel, Riet De Smet, Anagha Joshi, Yves Van de Peer, Kathleen Marchal posted to regulatory network module dragan direct comparative benchmark by ptrobajo on 2009-09-12 21:24:32 as along with 2 people lptolik TRHvidsten
	GeNGe: systematic generation of gene regulatory networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 9. (1 May 2009), pp. 1205-1207. by Hendrik Hache, Christoph Wierling, Hans Lehrach, Ralf Herwig posted to regulatory network inference dragan benchmark by ptrobajo on 2009-09-12 21:08:02 as along with 7 people ekotelnikova sotacam reyez tonamswish TRHvidsten rdiaz guhjy
	A Requirements Driven Framework for Benchmarking Semantic Web Knowledge Base Systems [My Copy] IEEE Transactions on Knowledge and Data Engineering In Knowledge and Data Engineering, IEEE Transactions on, Vol. 19, No. 2. (2007), pp. 297-309. by Yuanbo Guo, Abir Qasem, Zhengxiang Pan, Jeff Heflin posted to semantic benchmark by druvus on 2009-09-01 12:36:36 as along with 1 person mhayes
	The Case for Application-Specific Benchmarking [My Copy] In HOTOS '99: Proceedings of the The Seventh Workshop on Hot Topics in Operating Systems (1999), 102. by Margo Seltzer, David Krinsky, Keith Smith, Xiaolan Zhang posted to workload characterization benchmarking benchmark by thiagomanel to the group Desktop Data Grid on 2009-08-25 19:02:07 as
	Randomized benchmarking of single- and multi-qubit control in liquid-state NMR quantum information processing [My Copy] New Journal of Physics, Vol. 11, No. 1. (2009), 013034. by C. A. Ryan, M. Laforest, R. Laflamme posted to benchmark by xom on 2009-08-25 09:33:03 as along with 1 person mneeley
	A nine year study of file system and storage benchmarking [My Copy] (2007) by Avishay Traeger, Erez Zadok, Nikolai Joukov, Charles P. Wright posted to review performance filesystem benchmarking benchmark analysis by thiagomanel to the group Desktop Data Grid on 2009-08-22 16:21:38 as
	Benchmark Problems for Robust Control Design [My Copy] American Control Conference, 1992 In American Control Conference, 1992 (1992), pp. 2047-2048. by Bong Wie, Dennis S. Bernstein posted to robust design control benchmark by sengelken on 2009-08-20 18:56:42 as
	A Generalized Approach to Construct Benchmark Problems for Dynamic Optimization [My Copy] Simulated Evolution and Learning (2008), pp. 391-400. by Changhe Li, Shengxiang Yang posted to seal08 problems optimization dynamic construction benchmark by DonAndre on 2009-08-12 08:17:25 as
	Prediction of protein-protein interactions: a study of the co-evolution model. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 541 (2009), pp. 61-88. by Itai Sharon, Jason V. Davis, Golan Yona posted to interaction_prediction coevolution benchmark by chica on 2009-08-11 17:09:43 as along with 3 people kgutwin zwang phoenixzxl
	Lattice Boltzmann simulation of lid-driven flow in deep cavities [My Copy] Computers & Fluids, Vol. 35, No. 10. (December 2006), pp. 1116-1125. by D. Patil, K. Lakshmisha, B. Rogg posted to benchmark cavity flow lbe lid-driven by ballack on 2009-08-11 06:41:21 as
	A new protein linear motif benchmark for multiple sequence alignment software. [My Copy] BMC bioinformatics, Vol. 9 (25 April 2008), 213. by Emmanuel Perrodou, Claudia Chica, Olivier Poch, Toby J. Gibson, Julie D. Thompson posted to benchmark linear_motif_alignment by chica on 2009-08-10 13:53:55 as along with 3 people niallhaslam biehl chad_davis
	Teraflops Sustained Performance With Real World Applications [My Copy] International Journal of High Performance Computing Applications, Vol. 22, No. 2. (1 May 2008), pp. 131-148. by S. R. Tiyyagura, P. Adamidis, R. Rabenseifner, et al.P. Lammers, S. Borowski, F. Lippold, F. Svensson, O. Marxen, S. Haberhauer, A. P. Seitsonen, J. Furthmuller, K. Benkert, M. Galle, T. Bonisch, U. Kuster, M. M. Resch posted to benchmark performance_analysis supercomputer_cases by jahwa on 2009-08-05 19:42:20 as
	HPC global file system performance analysis using a scientific-application derived benchmark [My Copy] Parallel Computing, Vol. 35, No. 6. (June 2009), pp. 358-373. by Julian Borrill, Leonid Oliker, John Shalf, Hongzhang Shan, Andrew Uselton posted to benchmark i-o performance_analysis by jahwa on 2009-08-05 19:25:03 as along with 1 person dmeister
	Asap: A Framework for Over-Representation Statistics for Transcription Factor Binding Sites [My Copy] PLoS ONE, Vol. 3, No. 2. (20 February 2008), e1623. by Troels T. Marstrand, Jes Frellsen, Ida Moltke, et al.Martin Thiim, Eivind Valen, Dorota Retelska, Anders Krogh posted to benchmark kmer overrepresentation by nklee on 2009-08-05 07:57:48 as along with 3 people natstreet druvus heliopais
	Investigation of leading HPC I/O performance using a scientific-application derived benchmark [My Copy] In SC '07: Proceedings of the 2007 ACM/IEEE conference on Supercomputing (2007), pp. 1-12. by Julian Borrill, Leonid Oliker, John Shalf, Hongzhang Shan posted to benchmark i-o by jahwa on 2009-08-05 01:17:38 as
	Comparison Data Sets for Benchmarking QSAR Methodologies in Lead Optimization [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Ruchi R. Mittal, Ross A. Mckinnon, Michael J. Sorich posted to 2d 3d 40 ability benchmark data diverse lead optimization predictive qsar set by zimbo1 on 2009-07-20 09:23:13 as along with 1 person carlosjavierna
	Evaluation of Three Automated Genome Annotations for Halorhabdus utahensis [My Copy] PLoS ONE, Vol. 4, No. 7. (20 July 2009), e6291. by Peter Bakke, Nick Carney, Will DeLoache, et al.Mary Gearing, Kjeld Ingvorsen, Matt Lotz, Jay McNair, Pallavi Penumetcha, Samantha Simpson, Laura Voss, Max Win, Laurie J. Heyer, A. Malcolm Campbell posted to benchmark genome_annotation by ppgardne to the group Journal picks on 2009-07-18 09:32:58 as along with 4 people druvus kiekyon renatomilani neils

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metaheuristic	66
evolutionary-computation	58
performance-assessment	32
structure_comparison	30
comparison	23
structure_alignment	21
genetic-algorithm	19
continuous	18
protein_structure	18
optimization	15
xml	12
differential-evolution	11
network	10
simulation	10
dynamic	9
sequence_comparison	9
crossover	8
docking	8
multi-objective	8
mutation	8
agent	7
atc	6
classical	6
comparative_genomics	6
contact_maps	6
exact	6
phylogeny	6
score	6
structure_prediction	6
clique	5
filesystem	5
performance_analysis	5
affymetrix	4
ant-colony-optimization	4
benchmarking	4
bioinformatics	4
building-block	4
convergence	4
database	4
deep-seq	4
emulation	4
fitness-landscape	4
high-throughput-sequencing	4
hybridization	4
hydrogen-bond	4
manufacturing-control	4
microarray	4
motor	4
mpi	4
multi-agent	4
ontology	4
operator	4
parameter-setting	4
protein	4
recognition	4
regulatory	4
statistic	4
stochastic	4
tabu-search	4
xmark	4
3d	3
alignment	3
analysis-tool	3
background	3
chip-seq	3
classification	3
csp	3
ctcf	3
dft	3
evaluation	3
experiment-planning	3
gpgpu	3
gpu	3
inference	3
local_structure_similarity	3
msp	3
mtc	3
multi-modal	3
neural-network	3
nn	3
orthology	3
owl	3
performance	3
performance-analysis	3
pipeline	3
pka	3
protein_sequence	3
read-coverage	3
segmentation	3
sequence_alignment	3
shape	3
storage	3
structure_superposition	3
survey	3
texture	3
tpc	3
variable-structure	3
workload	3
wtd	3
xset	3

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