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Tag bg [48 articles]

Recent papers classified by the tag bg.
  • Which transposable elements are active in the human genome?
    Trends Genet, Vol. 23, No. 4. (April 2007), pp. 183-191.
    by RE Mills, EA Bennett, RC Iskow, SE Devine
    posted to 23 bg cited herv insertion te by yoanjacquemin on 2008-01-16 10:48:25 as read along with 4 people and 1 group bpb gpappas N0131826 cisevol BergmanLab
  • Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA.
    Genome Res (6 December 2006)
    by Eva K K Freyhult, Jonathan P P Bollback, Paul P P Gardner
    posted to bg hmm by yoanjacquemin on 2008-01-15 10:08:30 as read along with 9 people and 2 groups evaf jfr eckart_bindewald ppgardne gpalidwor dchughes aswin bjhaugen jayster4 G4ID Genetics-of-Gambling
  • A whole-genome assembly of Drosophila.
    Science, Vol. 287, No. 5461. (24 March 2000), pp. 2196-2204.
    by EW Myers, GG Sutton, AL Delcher, IM Dew, DP Fasulo, MJ Flanigan, SA Kravitz, CM Mobarry, KH Reinert, KA Remington, EL Anson, RA Bolanos, HH Chou, CM Jordan, AL Halpern, S Lonardi, EM Beasley, RC Brandon, L Chen, PJ Dunn, Z Lai, Y Liang, DR Nusskern, M Zhan, Q Zhang, X Zheng, GM Rubin, MD Adams, JC Venter
    posted to bg te by yoanjacquemin on 2008-01-15 08:26:08 as read along with 4 people and 2 groups bluto azazello wenhan tpreeprem MBLAB gatech-compgenomics
  • AVID: A Global Alignment Program
    Genome Res., Vol. 13, No. 1. (1 January 2003), pp. 97-102.
    by Nick Bray, Inna Dubchak, Lior Pachter
    posted to alignment bg suffixtree te by yoanjacquemin on 2008-01-15 08:23:57 as read along with 2 people and 1 group indigoviolet adijr EisenLab
  • Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER.
    BMC Bioinformatics, Vol. 6, No. 1. (15 April 2005)
    by M Wistrand, EL Sonnhammer
    posted to bg hmm by yoanjacquemin on 2008-01-15 10:05:13 as * along with 3 people mdimmic msierk rabio
  • A Transposon-Based Strategy for Sequencing Repetitive DNA in Eukaryotic Genomes
    Genome Res., Vol. 7, No. 5. (1 May 1997), pp. 551-563.
    by Scott E Devine, Stephanie L Chissoe, Yolanda Eby, Richard K Wilson, Jef D Boeke
    posted to bg te by yoanjacquemin on 2008-01-15 08:21:44 as read
  • Profile hidden Markov models.
    Bioinformatics, Vol. 14, No. 9. (1998), pp. 755-763.
    by SR Eddy
    posted to bg hmm by yoanjacquemin on 2008-01-15 10:00:21 as * along with 9 people ca3295 miguel chad_davis eweaver dgront rabio cjeans suizan nklee
  • Gene prediction: compare and CONTRAST
    Genome Biology, Vol. 8, No. 12. (2007)
    by Paul Flicek
    posted to bg crf gene prediction svm by yoanjacquemin on 2008-01-15 08:18:00 as read along with 4 people Borelli alexl wenhan dewaldron
  • Discovering and detecting transposable elements in genome sequences.
    Brief Bioinform (10 October 2007)
    by Casey M M Bergman, Hadi Quesneville
    posted to 213 bg cited herv te by yoanjacquemin on 2008-01-15 08:07:02 as read along with 9 people and 2 groups pradiptaray gpappas dpollard timflutre GustavoLacerda cabbagezs maximilianh cisevol urgi EisenLab BergmanLab
  • Recent Evolutions of Multiple Sequence Alignment Algorithms
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e123.
    by Cédric Notredame
    posted to bg multiplealign by yoanjacquemin on 2008-01-18 10:19:09 as read along with 9 people and 2 groups smbe2008 mdimmic rvosa timflutre stajich zwang cabbagezs groepl marti Bioinformatics FAB-lab
  • The evolution, distribution and diversity of endogenous retroviruses.
    Virus Genes, Vol. 26, No. 3. (May 2003), pp. 291-315.
    by R Gifford, M Tristem
    posted to bg herv te by yoanjacquemin on 2008-01-16 13:02:55 as read
  • Demystified . . . Human endogenous retroviruses
    Mol Pathol, Vol. 56, No. 1. (1 February 2003), pp. 11-18.
    by PN Nelson, PR Carnegie, J Martin, Davari, P Hooley, D Roden, S Rowland-Jones, P Warren, J Astley, PG Murray
    posted to bg herv review by yoanjacquemin on 2008-01-15 13:17:44 as read
  • Evolutionary History of Mammalian Transposons Determined by Genome-Wide Defragmentation.
    PLoS Comput Biol, Vol. 3, No. 7. (13 July 2007)
    by Joti Giordano, Yongchao Ge, Yevgeniy Gelfand, György Abrusán, Gary Benson, Peter E E Warburton
    posted to 23 age bg cited defrag te by yoanjacquemin on 2008-01-16 11:12:01 as read along with 6 people and 3 groups PetrovLab aprasad dchughes sebastien_vigneau N0131826 paulcartwright G4ID Genetics-of-Gambling BergmanLab
  • Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
    BMC Bioinformatics, Vol. 7 (25 October 2006), 474.
    by Oleksiy Kohany, Andrew J Gentles, Lukasz Hankus, Jerzy Jurka
    posted to bg compare hmm sgbd te by yoanjacquemin on 2008-01-15 10:20:20 as read along with 2 people timflutre niallhaslam
  • Repbase Update, a database of eukaryotic repetitive elements.
    Cytogenet Genome Res, Vol. 110, No. 1-4. (2005), pp. 462-467.
    by J Jurka, VV Kapitonov, A Pavlicek, P Klonowski, O Kohany, J Walichiewicz
    posted to 214 bg cited compare hmm sgbd te by yoanjacquemin on 2008-01-15 10:20:03 as read along with 4 people AaronDarling timflutre nume urgi
  • Endogenous retroviruses in the human genome sequence
    Genome Biology, Vol. 2, No. 6. (2001), pp. reviews1017.1-reviews1017.5.
    by David Griffiths
    posted to bg function herv te by yoanjacquemin on 2008-01-21 08:14:52 as read along with 2 people jrw getpost
  • The many faces of sequence alignment.
    Brief Bioinform, Vol. 6, No. 1. (March 2005), pp. 6-22.
    by S Batzoglou
    posted to alignment bg by yoanjacquemin on 2008-01-16 08:25:23 as read along with 4 people and 2 groups balajis dpollard sdvillal gjuggler Bioinformatics EisenLab
  • notes Anasaktiyoga: The Gospel of Selfless Action : The Gita According to Gandhi
    by Mahatma Gandhi
    posted to bg bg_english by rodrigogferreira on 2006-07-29 22:10:00 as read along with 1 group BG_translation
  • notes The Bhagavad Gita (Oxford World's Classics)
    (01 November 1994)
    by (ed) WJ Johnson
    posted to bg bg_english by rodrigogferreira on 2006-07-29 22:06:31 as read along with 1 group BG_translation
  • notes Die Bhagavadgita. Des Erhabenen Gesang.
    (01 December 1997)
    by Klaus Mylius
    posted to bg bg_deutsch by rodrigogferreira on 2006-07-29 21:59:03 as ** along with 1 group BG_translation
  • Hindu Gita: Ancient and Classical Interpretations of the Bhagavad Gita
    (23 June 1988)
    by A Sharma
    posted to bg translation by rodrigogferreira on 2006-07-07 14:39:50 as ** along with 1 group BG_translation
  • Bhagavad-Gita As It Is
    (01 March 1997)
    by Bhaktivedanta
    posted to bg hinduism yoga by rodrigogferreira on 2006-03-24 18:31:01 as read along with 1 group BG_translation
  • Fruits of Our Desiring : Enquiry into the Ethics of the Bhagawad Gita
    (25 March 1997)
    by Julius Lipner
    posted to bg ethics hinduism religion selfknowledge by rodrigogferreira on 2006-01-31 17:47:42 as * along with 1 group BG_translation
  • notes The Hindu Gita: Ancient and Classical Interpretations of the Bhagavadgita
    by Arvind Sharma
    posted to bg hinduism translation yoga by rodrigogferreira on 2006-07-04 21:57:25 as ** along with 1 group BG_translation
  • Bhagavad Gita: An Introduction
    (25 January 2007)
    by George Feuerstein
    posted to bg hinduism vedanta yoga by rodrigogferreira on 2006-07-27 15:57:44 as ** along with 1 group BG_translation
  • notes Translating India
    (31 July 2003)
    by Rita Kothari
    posted to bg india mahabharata ramayana sanskrit translation by rodrigogferreira on 2006-07-07 01:26:23 as read along with 1 group BG_translation
  • Sequence dependence of cross-hybridization on short oligo microarrays.
    Nucleic Acids Res, Vol. 33, No. 9. (2005)
    by C Wu, R Carta, L Zhang
    posted to bg transcriptomic by nicholso on 2008-03-10 17:02:00 as ** along with 1 person RMGraze
  • Model-based analysis of tiling-arrays for ChIP-chip.
    Proc Natl Acad Sci U S A, Vol. 103, No. 33. (15 August 2006), pp. 12457-12462.
    by WE Johnson, W Li, CA Meyer, R Gottardo, JS Carroll, M Brown, XS Liu
    posted to bg transcriptomic by nicholso on 2008-03-10 14:58:47 as ** along with 4 people and 1 group bertelsen kengg talponer caseybrown Plantandetc
  • Preprocessing of oligonucleotide array data
    Nat Biotech, Vol. 22, No. 6. (June 2004), pp. 656-658.
    by Zhijin Wu, Rafael A Irizarry
    posted to affy bg transcriptomic by nicholso on 2008-03-10 17:16:36 as ** along with 1 person RMGraze
  • Assessing the need for sequence-based normalization in tiling microarray experiments.
    Bioinformatics (25 March 2007)
    by Thomas E E Royce, Joel S S Rozowsky, Mark B B Gerstein
    posted to bg exonarray transcriptomic by nicholso on 2008-03-10 15:46:05 as read along with 3 people and 1 group bertelsen jfr mmarchin Bioinformatics
  • A model of molecular interactions on short oligonucleotide microarrays.
    Nat Biotechnol, Vol. 21, No. 7. (July 2003), pp. 818-821.
    by L Zhang, MF Miles, KD Aldape
    posted to affy bg transcriptomic by nicholso on 2008-03-10 16:22:43 as ** along with 2 people talponer bertelsen
  • Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays.
    Nucleic Acids Res, Vol. 31, No. 7. (1 April 2003), pp. 1962-1968.
    by D Hekstra, AR Taussig, M Magnasco, F Naef
    posted to affy bg transcriptomic by nicholso on 2008-03-13 21:57:46 as ** along with 1 person bertelsen
  • Solving the riddle of the bright mismatches: labeling and effective binding in oligonucleotide arrays.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 68, No. 1 Pt 1. (July 2003)
    by F Naef, MO Magnasco
    posted to affy bg transcriptomic by nicholso on 2008-03-10 15:29:27 as read along with 2 people bertelsen Dax42
  • Exon arrays provide accurate assessments of gene expression
    Genome Biology, Vol. 8 (15 May 2007), R82.
    by Karen Kapur, Yi Xing, Zhengqing Ouyang, Wing H Wong
    posted to affy bg exonarray transcriptomic by nicholso on 2008-03-10 15:21:44 as read along with 3 people srp33 bertelsen jfr
  • Position of the fluorescent label is a crucial factor determining signal intensity in microarray hybridizations.
    Nucleic Acids Res, Vol. 33, No. 19. (2005)
    by L Zhang, T Hurek, B Reinhold-Hurek
    posted to bg transcriptomic by nicholso on 2008-03-10 16:53:37 as **
  • Stochastic models inspired by hybridization theory for short oligonucleotide arrays.
    J Comput Biol, Vol. 12, No. 6. (g 2005), pp. 882-893.
    by Z Wu, RA Irizarry
    posted to affy bg transcriptomic by nicholso on 2008-03-10 16:19:03 as ** along with 2 people miguel rschulz
  • A Model-Based Background Adjustment for Oligonucleotide Expression Arrays
    Journal of the American Statistical Association, Vol. 99, No. 468., 909.
    by Zhijin Wu, Rafael A Irizarry, Robert Gentleman, Francisco Martinez-Murillo, Forrest Spencer
    posted to bg transcriptomic by nicholso on 2008-03-10 15:16:04 as read along with 4 people bertelsen RMGraze thomlo jo_davies
  • Prefrontal cortex and basal ganglia control access to working memory.
    Nat Neurosci (9 December 2007)
    by Fiona McNab, Torkel Klingberg
    posted to bg fmri gp working-memory by nelmor on 2008-01-02 12:23:51 as ** along with 3 people and 1 group sternshein elv gigiluk00 VisionLab
  • A Physiologically Plausible Model of Action Selection and Oscillatory Activity in the Basal Ganglia
    J. Neurosci., Vol. 26, No. 50. (13 December 2006), pp. 12921-12942.
    by Mark D Humphries, Robert D Stewart, Kevin N Gurney
    posted to action-selection bg model by nelmor on 2006-12-19 10:09:11 as ** along with 4 people josepe rcoreilly lenov mattions
  • Basal Ganglia Play a Unique Role in Task Switching within the Frontal-Subcortical Circuits: Evidence from Patients with Focal Lesions
    J. Cogn. Neurosci., Vol. 20, No. 6. (1 June 2008), pp. 1079-1093.
    by Einat Yehene, Nachshon Meiran, Nachum Soroker
    posted to switching rule human bg by nelmor on 2008-05-19 10:09:43 as **
  • Basal ganglia and supplementary motor area subtend duration perception: an fMRI study.
    Neuroimage, Vol. 19, No. 4. (August 2003), pp. 1532-1544.
    by AM Ferrandez, L Hugueville, S Lehéricy, JB Poline, C Marsault, V Pouthas
    posted to bg fmri sma timing by memphisphil on 2006-03-10 23:33:54 as ****
  • Neural network involved in time perception: an fMRI study comparing long and short interval estimation.
    Hum Brain Mapp, Vol. 25, No. 4. (August 2005), pp. 433-441.
    by V Pouthas, N George, JB Poline, M Pfeuty, PF Vandemoorteele, L Hugueville, AM Ferrandez, S Lehéricy, D Lebihan, B Renault
    posted to bg fmri sma timing by memphisphil on 2006-03-10 23:32:54 as **
  • Prediction of immediate and future rewards differentially recruits cortico-basal ganglia loops.
    Nat Neurosci, Vol. 7, No. 8. (August 2004), pp. 887-893.
    by SC Tanaka, K Doya, G Okada, K Ueda, Y Okamoto, S Yamawaki
    posted to bg forwardmodel reinforcement by memphisphil on 2005-12-19 22:37:33 as ** along with 1 person and 1 group klouie Glimcher_Lab
  • Neural representations of the target (goal) of visually guided arm movements in three motor areas of the monkey.
    J Neurophysiol, Vol. 64, No. 1. (July 1990), pp. 164-178.
    by GE Alexander, MD Crutcher
    posted to bg monkey motorcontrol motorcortex premotor presma reachgrasp by memphisphil on 2007-04-08 22:16:14 as read
  • Uncertainty-based competition between prefrontal and dorsolateral striatal systems for behavioral control
    Nature Neuroscience, Vol. 8, No. 12. (06 November 2005), pp. 1704-1711.
    by Nathaniel D Daw, Yael Niv, Peter Dayan
    posted to bg optimal pfc reinforcement response by memphisphil on 2006-05-05 17:37:17 as **** along with 6 people and 1 group oamg nelmor josepe codonn bach AlainDutech Glimcher_Lab
  • Banishing the homunculus: making working memory work
    Neuroscience, Vol. In Press, Corrected Proof
    by TE Hazy, MJ Frank, RC O'Reilly
    posted to bg pfc pvlv striatum wm by memphisphil on 2006-05-05 17:36:19 as ***** along with 3 people neural_nets_chapter khm cassandragould
  • Compensatory cortical mechanisms in Parkinson's disease evidenced with fMRI during the performance of pre-learned sequential movements.
    Brain Res (27 February 2007)
    by Rosella Mallol, Alfonso Barrós-Loscertales, Mario López, Vicente Belloch, Maria Antònia A Parcet, César Avila
    posted to bg fmri parkinsons pfc presma sequential by memphisphil on 2007-04-14 01:05:04 as **
  • Learning and selective attention.
    Nat Neurosci, Vol. 3 Suppl (November 2000), pp. 1218-1223.
    by P Dayan, S Kakade, PR Montague
    posted to attention bg motorlearning striatum by memphisphil on 2006-03-10 19:32:25 as ***** along with 4 people and 1 group nishiokov oamg kira afinucane Glimcher_Lab
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