Tag binding [more than 800 articles] Export

Recent papers classified by the tag binding.

	Structural Analysis of Lac Repressor Bound to Allosteric Effectors [My Copy] Journal of Molecular Biology, Vol. 370, No. 4. (20 July 2007), pp. 609-619. by Robert Daber, Steven Stayrook, Allison Rosenberg, Mitchell Lewis posted to site laci binding by Gabriel439 on 2009-11-20 18:45:12 as
	Analysis of membrane-localized binding kinetics with FRAP. [My Copy] European biophysics journal : EBJ, Vol. 37, No. 5. (June 2008), pp. 627-638. by Omer Dushek, Raibatak Das, Daniel Coombs posted to recovery reaction kinetics frap fluorescence diffusion binding analysis by gabe_rosser on 2009-11-19 17:01:35 as
	The DNA binding activity of p53 displays reaction-diffusion kinetics. [My Copy] Biophysical journal, Vol. 91, No. 1. (1 July 2006), pp. 330-342. by Peter Hinow, Carl E. Rogers, Christopher E. Barbieri, Jennifer A. Pietenpol, Anne K. Kenworthy, Emmanuele DiBenedetto posted to recovery reaction protein frap fluorescence dna diffusion binding by gabe_rosser on 2009-11-19 16:54:36 as
	A Simple Cipher Governs DNA Recognition by TAL Effectors [My Copy] Science (16 November 2009), 1178817. by Matthew J. Moscou, Adam J. Bogdanove posted to specificity binding by Dnogas on 2009-11-18 19:02:33 as along with 1 person stubrown
	Auxiliary-field quantum Monte Carlo calculations of molecular systems with a Gaussian basis [My Copy] The Journal of Chemical Physics, Vol. 124, No. 22. (2006), 224101. by W. Al A. Saidi, Shiwei Zhang, Henry Krakauer posted to qmc phaseless molecules gaussian binding afqmc by wirawan0 on 2009-11-18 18:48:36 as
	Auxiliary-field quantum Monte Carlo study of first- and second-row post-d elements [My Copy] The Journal of Chemical Physics, Vol. 125, No. 15. (2006), 154110. by W. Al A. Saidi, Henry Krakauer, Shiwei Zhang posted to qmc pseudopotential gaussian binding afqmc by wirawan0 on 2009-11-18 18:47:30 as
	Auxiliary-field quantum Monte Carlo study of TiO and MnO molecules [My Copy] Physical Review B (Condensed Matter and Materials Physics), Vol. 73, No. 7. (2006), 075103. by W. Al A. Saidi, Henry Krakauer, Shiwei Zhang posted to transition-metal qmc planewave molecules binding afqmc by wirawan0 on 2009-11-18 18:44:14 as along with 1 person driver
	Phaseless auxiliary-field quantum Monte Carlo calculations with plane waves and pseudopotentials: Applications to atoms and molecules [My Copy] Physical Review B (Condensed Matter and Materials Physics), Vol. 75, No. 24. (2007), 245123. by Malliga Suewattana, Wirawan Purwanto, Shiwei Zhang, Henry Krakauer, Eric J. Walter posted to qmc pseudopotential planewave molecules ionic binding afqmc by wirawan0 on 2009-11-18 18:42:09 as
	Oxygen adsorption on graphite and nanotubes [My Copy] The Journal of Chemical Physics, Vol. 118, No. 3. (2003), pp. 1003-1006. by P. Giannozzi, R. Car, G. Scoles posted to van-der-walls oxygen graphene binding by wirawan0 on 2009-11-18 18:33:18 as
	Cooperative extraction of membrane nanotubes by molecular motors [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 49. (7 December 2004), pp. 17096-17101. by CÃ©cile Leduc, CampÃ, Konstantin B. Zeldovich, et al.AurÃ©lien Roux, Pascale Jolimaitre, Line Bourel-Bonnet, Bruno Goud, Jean-FranÃ§ois Joanny, Patricia Bassereau, Jacques Prost posted to reaction_kinetics microtubule microtuble kinesin binding by fkowald on 2009-11-18 12:08:35 as
	Structural and dynamic changes of the serum response element and the core domain of serum response factor induced by their association [My Copy] Biochemical and Biophysical Research Communications (10 November 2009) by Josef Štěpánek, Kopecký Jr, Alberto Mezzetti, et al.Pierre-Yves Turpin, Denise Paulin, Bernard Alpert, Christian Zentz posted to srf binding by idonaldson on 2009-11-16 09:59:31 as
	Structural systems biology: modelling protein interactions. [My Copy] Nature reviews. Molecular cell biology, Vol. 7, No. 3. (March 2006), pp. 188-197. by Patrick Aloy, Robert B. Russell posted to system_biology protein-protein binding by flbarroso on 2009-11-14 16:16:46 as along with 24 people and 3 groups timg chica Scis0000002 ubcg08l ana aalibes bicko xico dgront drastic choonpeng henschel ruvido massivemayhem cat_worth fishtank iris_2001 gvuister lpfernandes Evangelia andreas_foersch higueruelo chad_davis jteyra structural_bioinformatics Bioinformatics WetBiology
	Exploitation of binding energy for catalysis and design [My Copy] Nature, Vol. 461, No. 7268. (29 October 2009), pp. 1300-1304. by Summer B. Thyme, Jordan Jarjour, Ryo Takeuchi, et al.James J. Havranek, Justin Ashworth, Andrew M. Scharenberg, Barry L. Stoddard, David Baker posted to binding by flbarroso on 2009-11-14 16:15:49 as along with 2 people pablocarb yse
	Theory of Free Energy and Entropy in Noncovalent Binding [My Copy] Chemical Reviews, Vol. 109, No. 9. (9 September 2009), pp. 4092-4107. by Huan-Xiang Zhou, Michael K. Gilson posted to protein_dynamics protein-ligand molecular_dynamics_simulations md_simulation free_energy entropy drug-discovery binding by jmccammon to the group McCammon on 2009-11-12 01:00:02 as along with 7 people and 1 group cchang agrossfield anuragsethi sobolevnrm dr_proton qshao paulschlesinger Chang group
	Simultaneous prediction of protein folding and docking at high resolution [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 45. (10 November 2009), pp. 18978-18983. by Rhiju Das, Ingemar AndrÃ©, Yang Shen, et al.Yibing Wu, Alexander Lemak, Sonal Bansal, Cheryl H. Arrowsmith, Thomas Szyperski, David Baker posted to unstructured simulation rosetta folding docking das09pdf binding based by paulschlesinger on 2009-11-12 00:10:36 as along with 4 people ahmetbakan apaydin ibuch zwang
	Inclusion of ionization states of ligands in affinity calculations [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 1. (2009), pp. 138-150. by Serena Donnini, Alessandra Villa, Gerrit Groenhof, Alan E. Mark, Rik K. Wierenga, André H. Juffer posted to titration ph binding by flbarroso on 2009-11-11 10:31:10 as along with 5 people and 2 groups onufriev rbaron ibuch sobolevnrm RamuAnandakrishnan McCammon baker-group
	Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities [My Copy] Nature Biotechnology, Vol. 24, No. 11. (24 September 2006), pp. 1429-1435. by Michael F. Berger, Anthony A. Philippakis, Aaron M. Qureshi, Fangxue S. He, Preston W. Estep, Martha L. Bulyk posted to nature de-bruijn biotech binding by seb1 on 2009-11-08 00:33:58 as along with 11 people and 1 group absterga cambray aalibes jfr dpollard stsaft maldi cthachuk olympos yevishere kristallreiner EisenLab
	The role of the parietal cortex in visual feature binding. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 99, No. 16. (6 August 2002), pp. 10917-10922. by Keith M. Shafritz, John C. Gore, Rene Marois posted to binding attention by braskob on 2009-11-05 22:31:46 as along with 1 person cassandragould
	Feature binding, attention and object perception [My Copy] Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences, Vol. 353, No. 1373. (29 August 1998), pp. 1295-1306. by Anne Treisman posted to binding attention by braskob on 2009-11-05 20:07:37 as along with 3 people and 1 group neilh sylvain_chevallier cassandragould S-Lab
	Dynamics of feature binding during object-selective attention [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 20. (30 September 2003), pp. 11806-11811. by M. A. Schoenfeld, C. Tempelmann, A. Martinez, et al.J. M. Hopf, C. Sattler, H. J. Heinze, S. A. Hillyard posted to binding attention by braskob on 2009-11-05 19:35:53 as
	Medial Temporal Lobe Activity Predicts Successful Relational Memory Binding [My Copy] J. Neurosci., Vol. 28, No. 1. (2 January 2008), pp. 116-124. by Deborah E. Hannula, Charan Ranganath posted to temporal_lobe binding by ayzitd on 2009-11-02 01:04:27 as along with 2 people and 1 group jillhuang brockkirwan VisionLab
	Quantifying Correlations Between Allosteric Sites in Thermodynamic Ensembles [My Copy] Journal of Chemical Theory and Computation, Vol. 5, No. 9. (8 September 2009), pp. 2486-2502. by Christopher L. McClendon, Gregory Friedland, David L. Mobley, Homeira Amirkhani, Matthew P. Jacobson posted to protein_dynamics protein-ligand molecular_dynamics_simulations md_simulation drug-discovery binding allostery by jmccammon to the group McCammon on 2009-10-31 19:59:28 as along with 3 people anuragsethi pmung acpan
	Post-transcriptional regulation in cancer. [My Copy] Biology of the cell / under the auspices of the European Cell Biology Organization, Vol. 96, No. 7. (September 2004), pp. 479-498. by Yann Audic, Rebecca S. Hartley posted to rna proteins binding by hcoller on 2009-10-30 19:18:18 as
	Aberrant regulation of messenger RNA 3'-untranslated region in human cancer. [My Copy] Cellular oncology : the official journal of the International Society for Cellular Oncology, Vol. 29, No. 1. (2007), pp. 1-17. by Isabel López de Silanes, María Paz P. Quesada, Manel Esteller posted to rna protein binding by hcoller on 2009-10-30 19:15:06 as along with 1 person bertelsen
	Are cortical models really bound by the "binding problem"? [My Copy] Neuron, Vol. 24, No. 1. (September 1999) by M. Riesenhuber, T. Poggio posted to binding by braskob on 2009-10-30 17:24:11 as along with 1 person cassandragould
	Minimizing binding errors using learned conjunctive features. [My Copy] Neural computation, Vol. 12, No. 4. (April 2000), pp. 731-762. by B. W. Mel, J. Fiser posted to binding by braskob on 2009-10-29 16:46:37 as
	Mechanism of coupled folding and binding of an intrinsically disordered protein [My Copy] Nature, Vol. 447, No. 7147. (23 May 2007), pp. 1021-1025. by Kenji Sugase, H. Jane Dyson, Peter E. Wright posted to mechanism_susage_nature07 idp binding by chemrahul82 on 2009-10-28 23:20:53 as along with 8 people ubcg08l ibuch jteyra cjeans allmensch amwands hsekiguc cactus
	Conformational selection or induced fit: A flux description of reaction mechanism [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 33. (18 August 2009), pp. 13737-13741. by Gordon G. Hammes, Yu-Chu Chang, Terrence G. Oas posted to mechanism_flux idp description_hammes_pnas09 binding by chemrahul82 on 2009-10-28 23:04:27 as along with 4 people and 1 group xdeupi anuragsethi pmung barry McCammon
	Linking folding and binding [My Copy] Current Opinion in Structural Biology, Vol. 19, No. 1. (February 2009), pp. 31-38. by Peter E. Wright, H. Jane Dyson posted to mechanism_wright09 idp binding by chemrahul82 on 2009-10-28 23:00:24 as along with 3 people and 1 group sobolevnrm higueruelo flbarroso baker-group
	Exhaustive Search for Over-represented DNA Sequence Motifs with CisFinder [My Copy] DNA Res, Vol. 16, No. 5. (1 October 2009), pp. 261-273. by Alexei A. Sharov, Minoru S. H. Ko posted to word transcription-factor tf motif k-word ctcf consensus binding-site binding-motif binding by sebastien_vigneau to the group CTCF on 2009-10-28 22:59:36 as along with 3 people and 1 group nklee operon polivares BergmanLab
	Reconciling binding mechanisms of intrinsically disordered proteins [My Copy] Biochemical and Biophysical Research Communications, Vol. 382, No. 3. (08 May 2009), pp. 479-482. by L. Michel Espinoza-Fonseca posted to review_espinzoa-fonseca_09 mechanism idp binding by chemrahul82 on 2009-10-28 22:59:05 as along with 1 person flbarroso
	Identification of Functional LsrB-Like Autoinducer-2 Receptors [My Copy] J. Bacteriol., Vol. 191, No. 22. (15 November 2009), pp. 6975-6987. by Catarina S. Pereira, Anna K. de Regt, Patricia H. Brito, Stephen T. Miller, Karina B. Xavier posted to receptor quorum luxs lsrb binding autoinducer-2 ai-2 by Winzer on 2009-10-28 09:09:50 as
	The Role of Neural Mechanisms of Attention in Solving the Binding Problem [My Copy] Neuron, Vol. 24, No. 1. (September 1999), pp. 19-29. by John H. Reynolds, Robert Desimone posted to binding by braskob on 2009-10-27 22:33:54 as
	Highly Conserved Cysteines within the Ly6 Domain of GPIHBP1 Are Crucial for the Binding of Lipoprotein Lipase [My Copy] Journal of Biological Chemistry, Vol. 284, No. 44. (30 October 2009), pp. 30240-30247. by Anne P. Beigneux, Peter Gin, Brandon S. J. Davies, et al.Michael M. Weinstein, AndrÃ© Bensadoun, Loren G. Fong, Stephen G. Young posted to protein lipoprotein lipase endothelial cells binding beign09pdf by paulschlesinger on 2009-10-24 01:55:53 as
	Conservative and Nonconservative Torques in Optical Binding [My Copy] Physical Review Letters, Vol. 103, No. 17. (2009), 173602. by D. Haefner, S. Sukhov, A. Dogariu posted to torque optical nonretarded binding by convulted on 2009-10-23 21:29:11 as
	The second transmembrane domain of the human type 1 angiotensin II receptor participates in the formation of the ligand binding pocket and undergoes integral pivoting movement during the process of receptor activation. [My Copy] The Journal of biological chemistry, Vol. 284, No. 18. (1 May 2009), pp. 11922-11929. by Ivana Domazet, Brian J. Holleran, Stéphane S. Martin, et al.Pierre Lavigne, Richard Leduc, Emanuel Escher, Gaétan Guillemette posted to tm2 cys_scanning binding angiotensin activation by xdeupi on 2009-10-23 16:14:47 as
	Exploiting structural and topological information to improve prediction of RNA-protein binding sites. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (18 October 2009), 341. by Stefan R. Maetschke, Zheng Yuan posted to sites rna protein prediction motif binding by jlike on 2009-10-23 14:05:03 as along with 3 people and 1 group sillitoe reyez heliopais Orengo Group Journal Picks
	Prediction of Protein Binding Regions in Disordered Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (1 May 2009), e1000376. by Bálint Mészáros, István Simon, Zsuzsanna Dosztányi posted to site regions prediction disordered binding 23-oct-09 by CorinYeats to the group Orengo Group Journal Picks on 2009-10-23 11:53:48 as along with 3 people kiekyon hryk niallhaslam
	The what and why of binding: the modeler's perspective. [My Copy] Neuron, Vol. 24, No. 1. (September 1999) by C. von der Malsburg posted to binding by braskob on 2009-10-21 21:34:14 as along with 2 people sam1001 cassandragould
	ANCHOR: web server for predicting protein binding regions in disordered proteins [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2745-2746. by Zsuzsanna Dosztanyi, Balint Meszaros, Istvan Simon posted to web_tool standalone_tool protein_structure binding by jforment to the group Bioinformatics Core Service on 2009-10-21 12:43:09 as
	Unsupervised Segmentation With Dynamical Units [My Copy] Neural Networks, IEEE Transactions on, Vol. 19, No. 1. (14 January 2008), pp. 168-182. by A. Ravishankar Rao, G. A. Cecchi, C. C. Peck, J. R. Kozloski posted to synchrony learning binding by braskob on 2009-10-20 20:03:17 as
	P64, a Novel Major Virion DNA-Binding Protein Potentially Involved in Condensing the Spodoptera frugiperda Ascovirus 1a Genome [My Copy] J. Virol., Vol. 83, No. 6. (15 March 2009), pp. 2708-2714. by Yeping Tan, Tatsinda Spears, Dennis K. Bideshi, et al.Jeffrey J. Johnson, Robert Hice, Yves Bigot, Brian A. Federici posted to viral sequences rich proteins protein genome dna condensation binding arginine by armaquim7 on 2009-10-16 09:29:11 as
	Peptide-mediated DNA condensation for non-viral gene therapy [My Copy] Biotechnology Advances, Vol. 27, No. 4. (July 2009), pp. 432-438. by Paolo Saccardo, Antonio Villaverde, Nuria González-Montalbán posted to viruses therapy protein peptides gene engineering dna cationic binding artificial by armaquim7 on 2009-10-16 09:08:31 as
	Adsorption Mechanism of Polypeptides and Their Location at Hydrophobic Interfaces [My Copy] ChemPhysChem, Vol. 9999, No. 9999. (2009), NA. by Tobias Pirzer, Thorsten Hugel posted to pirzer09psd peptide membrane interfaces interaction hydrophobic binding absorption by paulschlesinger on 2009-10-16 02:12:53 as
	Nonlinear transmission and light localization in photonic crystal waveguides [My Copy] (16 Jan 2002) by Sergei F. Mingaleev, Yuri S. Kivshar posted to tight photonic localized defects crystal binding by jiangqian on 2009-10-15 21:03:47 as
	Fragile X-related protein and VIG associate with the RNA interference machinery [My Copy] Genes & Development, Vol. 16, No. 19. (1 October 2002), pp. 2491-2496. by Amy A. Caudy, Mike Myers, Gregory J. Hannon, Scott M. Hammond posted to rna protein microrna binding by hcoller on 2009-10-14 04:10:35 as
	Tensor product variable binding and the representation of symbolic structures in connectionist systems [My Copy] Artif. Intell., Vol. 46, No. 1-2. (1990), pp. 159-216. by P. Smolensky posted to tensor model language binding by almadana on 2009-10-13 19:07:07 as
	Alternative splicing as a mechanism for regulating 14-3-3 binding: interactions between hD53 (TPD52L1) and 14-3-3 proteins. [My Copy] Journal of molecular biology, Vol. 332, No. 3. (19 September 2003), pp. 675-687. by Rose Boutros, Angela M. Bailey, Sarah H. Wilson, Jennifer A. Byrne posted to regulation binding 14-3-3 by nns1987 on 2009-10-13 13:54:51 as
	Prediction of the Water Content in Protein Binding Sites [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 40. (8 October 2009), pp. 13337-13346. by Julien Michel, Julian Tirado-Rives, William L. Jorgensen posted to water_molecules solvation simulation_methodology protein-ligand monte_carlo md_simulation free_energy drug-discovery binding by jmccammon to the group McCammon on 2009-10-10 21:07:02 as along with 2 people snichols15 qshao
	Infants' intermodal perception of events [My Copy] Cognitive Psychology, Vol. 8, No. 4. (October 1976), pp. 553-560. by E. Spelke posted to visual temporal_integration development binding auditory by BBoyButzemann on 2009-10-08 13:30:12 as

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structure	338
protein	177
algorithm	138
transcription	106
site	105
review	103
complexes	97
prediction	88
protein-ligand	87
electrostatics	75
free_energy	75
ligand	74
embl	72
factor	72
networks	72
evolution	70
dna	69
database	67
protein-protein	64
proj_assembly	61
docking	56
membrane	55
md_simulation	54
drug-discovery	51
sites	51
yeast	50
modelling	49
activation	42
ligands	42
motif	42
chemistry	36
interaction	35
energy	34
proj_interprets	33
agonist	32
drug	32
statistics	31
folding	30
md	29
receptor	28
14-3-3	27
diffusion	27
gene	27
disorder	26
experimental	25
ppi	25
rna	24
attention	23
computational	23
domain	23
gpcr	23
modeling	22
affinity	21
clustering	21
hiv	21
molecular	21
optical	21
peptide	21
b2ar	20
bioinformatics	20
free-energy	20
peptides	20
tfbs	20
brownian_dynamics	19
dynamics	19
model	19
simulation	19
enzyme	18
kinetics	18
allostery	17
chromatin	17
sequence	17
classic	16
ic	16
proteins	16
software	16
solvation	16
bsc	15
data_integration	15
entropy	15
expression	15
regulation	15
specificity	15
tf	15
drosophila	14
method	14
non-redundant	14
optimization	14
synchrony	14
validation	14
analysis	13
classification	13
design	13
energy_entropy	13
fluorescence	13
free	13
function	13
surface	13
tight	13
vision	13

Tag binding [more than 800 articles] Export

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