Tag binding_site [73 articles] Export

Recent papers classified by the tag binding_site.

	Prediction of Potency of Protease Inhibitors Using Free Energy Simulations with Polarizable Quantum Mechanics-Based Ligand Charges and a Hybrid Water Model [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Debananda Das, Yasuhiro Koh, Yasushi Tojo, Arun K. Ghosh, Hiroaki Mitsuya posted to simulation_methods quantum_mechanics protease_inhibitors interactions free_energy dec09 binding_site by klexa on 2009-12-14 15:51:30 as
	Rapid Comparison of Protein Binding Site Surfaces with Property Encoded Shape Distributions [My Copy] Journal of Chemical Information and Modeling In Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Sourav Das, Arshad Kokardekar, Curt M. Breneman posted to surface_characteristics shape protein-structure dec09 binding_site by klexa on 2009-12-14 15:47:19 as along with 2 people stharward nickolay
	High-Throughput Virtual Screening of Proteins Using GRID Molecular Interaction Fields [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Simone Sciabola, Robert V. Stanton, James E. Mills, et al.Maria M. Flocco, Massimo Baroni, Gabriele Cruciani, Francesca Perruccio, Jonathan S. Mason posted to screening protein mifs hts grid dec09 characterization binding_site by klexa on 2009-12-14 15:46:16 as along with 1 person zimbo1
	Recipes for the Selection of Experimental Protein Conformations for Virtual Screening [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Manuel Rueda, Giovanni Bottegoni, Ruben Abagyan posted to selectivity screening protein dec09 conformation binding_site by klexa on 2009-12-14 15:12:21 as
	Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure [My Copy] PLoS Comput Biol In PLoS Comput Biol, Vol. 5, No. 12. (4 December 2009), e1000585. by John A. Capra, Roman A. Laskowski, Janet M. Thornton, Mona Singh, Thomas A. Funkhouser posted to structure software protein-structure binding_site by hryk on 2009-12-07 19:29:24 as along with 3 people and 1 group sobolevnrm apaydin kshameer structural_bioinformatics
	LIBRUS: combined machine learning and homology information for sequence-based ligand-binding residue prediction [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3099-3107. by Chris Kauffman, George Karypis posted to machine_learning binding_site by apaydin on 2009-12-05 18:52:03 as along with 1 person and 1 group neils Orengo Group Journal Picks
	SitesIdentify: a protein functional site prediction tool. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 379. by Tracey Bray, Pedro Chan, Salim Bougouffa, Richard Greaves, Andrew J. Doig, Jim Warwicker posted to ligand-protein-binding binding_site by apaydin on 2009-12-05 18:51:41 as along with 4 people and 3 groups sillitoe jforment kshameer renatomilani Orengo Group Journal Picks Bioinformatics Core Service structural_bioinformatics
	Prediction of protein binding sites in protein structures using hidden Markov support vector machine. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 381. by Bin Liu, Xiaolong Wang, Lei Lin, Buzhou Tang, Qiwen Dong, Xuan Wang posted to ligand-protein-binding binding_site by apaydin on 2009-12-05 18:51:30 as along with 4 people and 1 group sillitoe dakelley peteruetz poirel Orengo Group Journal Picks
	Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 106, No. 46. (17 November 2009), pp. 19346-19351. by Tomasz Wlodarski, Bojan Zagrovic posted to ubiquitin theory induced_fit conformational_selection conformational_changes binding_site binding_interactions averaging_problem by rbaron to the group McCammon on 2009-12-03 23:40:55 as along with 3 people barry okapi ahmetbakan
	EASYMIFS and SITEHOUND: a toolkit for the identification of ligand-binding sites in protein structures [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3185-3186. by Dario Ghersi, Roberto Sanchez posted to prediction ligand-protein-binding binding_site by apaydin on 2009-11-23 20:46:07 as along with 1 person and 1 group zimbo1 Orengo Group Journal Picks
	OptGraft: A computational procedure for transferring a binding site onto an existing protein scaffold [My Copy] Protein Science, Vol. 18, No. 1. (2009), pp. 180-195. by Hossein Fazelinia, Patrick C. Cirino, Costas D. Maranas posted to scaffold proteinssfb jan09 binding_site by klexa on 2009-11-04 14:41:20 as
	A novel and efficient tool for locating and characterizing protein cavities and binding sites [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (11 September 2009), NA. by Ashutosh Tripathi, Glen E. Kellogg posted to nov09 identification binding_site by nickolay on 2009-11-03 20:50:02 as along with 2 people higueruelo ahmetbakan
	Definition of the G Protein-Coupled Receptor Transmembrane Bundle Binding Pocket and Calculation of Receptor Similarities for Drug Design [My Copy] Journal of Medicinal Chemistry, Vol. 52, No. 14. (23 July 2009), pp. 4429-4442. by David E. Gloriam, Steven M. Foord, Frank E. Blaney, Stephen L. Garland posted to theory gpcr drug binding_site by xdeupi on 2009-10-06 17:42:06 as
	Peptides as protein binding site mimetics [My Copy] Current Opinion in Chemical Biology, Vol. 12, No. 6. (17 December 2008), pp. 707-713. by J. Eichler posted to rt protein_structure_and_function mimicry ligand_interactions biomedical_applications binding_site by skywalkerus02 on 2009-10-03 18:22:08 as along with 1 person higueruelo
	The mechanism of transport by mitochondrial carriers based on analysis of symmetry [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 46. (18 November 2008), pp. 17766-17771. by Alan J. Robinson, Catherine Overy, Edmund R. S. Kunji posted to uncoupling_proteins transporters transport_mechanism symmetry substrates substrate salt_bridge pnas motifs mitochondrial_matrix mitochondrial_carriers ions interaction_energies disruption coupling central_cavity bridge_network binding_site by girayenkavi on 2009-09-09 17:18:28 as along with 3 people ec430 martainn kshundyak
	Argonaute HITS-CLIP decodes microRNA\|[ndash]\|mRNA interaction maps [My Copy] Nature In Nature, Vol. 460, No. 7254. (17 June 2009), pp. 479-486. by Sung W. Chi, Julie B. Zang, Aldo Mele, Robert B. Darnell posted to smallrna mirna gene_regulation binding_site by stajich to the group Mycology on 2009-09-08 05:53:10 as along with 18 people and 2 groups jodavila hzoltan pattersonee heliopais guhjy hcoller rschulz natstreet kongl gbloeb fenghezi diaz0058 gdb jbhiatt megraw tonamswish giovenko valeriehilgers Journal picks microRNA
	Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree [My Copy] Journal of Molecular Biology, Vol. 385, No. 1. (09 January 2009), pp. 91-98. by M. Kann, B. Shoemaker, A. Panchenko, T. Przytycka posted to binding_site co-adaptation co-evolution compensatory_mutations evolution_rate mirror_tree protein-protein_interaction by biomcgary on 2009-07-21 17:39:22 as along with 11 people and 2 groups mgomes chica druvus sobolevnrm mhofree grahamc barry zwang marti reyez paulschlesinger baker-group Bioinformatics
	Large-Scale Turnover of Functional Transcription Factor Binding Sites in Drosophila [My Copy] PLoS Comput Biol, Vol. 2, No. 10. (13 October 2006), e130. by Alan M. Moses, Daniel A. Pollard, David A. Nix, et al.Venky N. Iyer, Xiao-Yong Li, Mark D. Biggin, Michael B. Eisen posted to binding_site cre expression_evolution transcription_factor_binding_site by daveGerrard on 2009-06-22 12:21:42 as along with 3 people and 1 group gdb nickluscombe nuin EBI-regulation
	New class of microRNA targets containing simultaneous 5'-UTR and 3'-UTR interaction sites. [My Copy] Genome research, Vol. 19, No. 7. (31 July 2009), pp. 1175-1183. by Inhan Lee, Subramanian S. Ajay, Jong In I. Yook, et al.Hyun Sil S. Kim, Su Hyung H. Hong, Nam Hee H. Kim, Saravana M. Dhanasekaran, Arul M. Chinnaiyan, Brian D. Athey posted to binding_site mirna site target transcript by stajich to the group Mycology on 2009-05-28 23:04:16 as along with 16 people and 4 groups danaiancu hzoltan ebcgantman jfr ashkelon13 heliopais megraw fenghezi fpattyn tmmurali ppgardne tonamswish Einat daforerog valeriehilgers ealloza Neuroblastoma Journal picks microRNA cube_and_beyond
	Diversity and complexity in DNA recognition by transcription factors. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong F. Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to binding_site in_vitro transcription_factor by dpollard to the group RockmanLab on 2009-05-28 18:08:54 as along with 25 people vingron bsamal sebastien_vigneau nklee sconlan isimpson jbhiatt daforerog absterga mingzhi galka8_diploma fenghezi TRHvidsten ilyashl cambray rpatward tibbitts siebert JustinCrocker burak aalibes dipenps roys emptyhb tmmurali
	Extracting transcription factor binding sites from unaligned gene sequences with statistical models. [My Copy] BMC bioinformatics, Vol. 9 Suppl 12 (2008) by C. C. Lu, W. H. Yuan, T. M. Chen posted to binding_site transcription_factor by stajich to the group Mycology on 2009-04-05 22:30:16 as along with 3 people kristallreiner idonaldson maximilianh
	Detection of cis -element clusters in higher eukaryotic DNA [My Copy] Bioinformatics, Vol. 17, No. 10. (1 October 2001), pp. 878-889. by Martin C. Frith, Ulla Hansen, Zhiping Weng posted to binding_site in_silico cis-regulatory by daveGerrard to the group BergmanLab on 2009-03-30 16:40:30 as along with 2 people and 1 group maximilianh indigoviolet EisenLab
	Binding Site Similarity Analysis for the Functional Classification of the Protein Kinase Family [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 2. (23 February 2009), pp. 318-329. by Sarah L. Kinnings, Richard M. Jackson posted to binding_site by jerome on 2009-02-19 13:27:50 as along with 5 people mnishimu nickolay Klapampfer carlosjavierna reyez
	DNA-binding study identifies C-box and hybrid C/G-box or C/A-box motifs as high-affinity binding sites for STF1 and LONG HYPOCOTYL5 proteins. [My Copy] Plant physiology, Vol. 146, No. 4. (April 2008), pp. 1862-1877. by Y. H. Song, C. M. Yoo, A. P. Hong, et al.S. H. Kim, H. J. Jeong, S. Y. Shin, H. J. Kim, D. J. Yun, C. O. Lim, J. D. Bahk, S. Y. Lee, R. T. Nagao, J. L. Key, J. C. Hong posted to binding_site promoters by sanchezbuelna on 2009-01-04 05:47:39 as
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to binding_site bioinformatics chipseq computational_biology methods shortread solexa by stajich to the group Mycology on 2008-09-26 16:02:11 as along with 24 people and 1 group hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics
	Turnover of binding sites for transcription factors involved in early Drosophila development [My Copy] Gene, Vol. 310 (22 May 2003), pp. 215-220. by Javier Costas,, Fernando Casares,, Jorge Vieira, posted to binding binding_site site turnover by brant on 2008-08-04 15:20:55 as along with 1 person emptyhb
	Sepsid even-skipped Enhancers Are Functionally Conserved in Drosophila Despite Lack of Sequence Conservation [My Copy] PLoS Genet, Vol. 4, No. 6. (27 June 2008), e1000106. by Emily E. Hare, Brant K. Peterson, Venky N. Iyer, Rudolf Meier, Michael B. Eisen posted to binding_site drosophila even-skipped evodevo evolution promotor transcription_factor by stajich to the group Mycology on 2008-06-28 18:16:38 as along with 8 people and 1 group lusk maximilianh Stew emptyhb djkt pradiptaray cisevol caseybrown cis-regulatory-evolution
	A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors [My Copy] Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237. by Sebastian J. Maerkl, Stephen R. Quake posted to binding_site in_vitro by brant on 2008-04-24 09:32:08 as along with 9 people and 2 groups absterga jjray dpollard emilyhare adepace aswin skoch3 blobbybirdman emptyhb EisenLab Koch_Lab
	Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W199-203. by Giulio Pavesi, Paolo Mereghetti, Giancarlo Mauri, Graziano Pesole posted to binding_site prediction by dandaman on 2008-02-11 15:40:16 as along with 8 people farhat Dulce wowalz coldmeadow djkt dquest xiaobeizhao bryankr
	Assessing computational tools for the discovery of transcription factor binding sites [My Copy] Nat Biotech, Vol. 23, No. 1. (06 January 2005), pp. 137-144. by Martin Tompa, Nan Li, Timothy L. Bailey, et al.George M. Church, Bart De Moor, Eleazar Eskin, Alexander V. Favorov, Martin C. Frith, Yutao Fu, W. James Kent, Vsevolod J. Makeev, Andrei A. Mironov, William S. Noble, Giulio Pavesi, Graziano Pesole, Mireille Regnier, Nicolas Simonis, Saurabh Sinha, Gert Thijs, Jacques van Helden, Mathias Vandenbogaert, Zhiping Weng, Christopher Workman, Chun Ye, Zhou Zhu posted to binding_site prediction by dandaman on 2008-02-11 15:39:26 as along with 38 people and 6 groups mpizbioinfo megraw Dulce farhat wowalz mhofree jasontsai heliopais pengchy daforerog yylin cambray emptyhb bryankr icases ana barry aalibes aprasad jfr tuck chad_davis lyongu tabu dquest neveaire ranb johncumbers noano xiaobeizhao olympos GustavoLacerda nklee mdimon vietanh0 ep161302 nuin Stew structural_bioinformatics Biostatistics Computational-Genomics Bioinformatics Neuroscience TNT
	Using DNA duplex stability information for transcription factor binding site discovery. [My Copy] Pac Symp Biocomput (2008), pp. 453-464. by R. Gordân, A. J. Hartemink posted to binding_site biophysical_model method motif_detection prediction transcription_factor by dpollard to the group EisenLab on 2008-02-01 06:21:42 as along with 1 person bootsy
	Use of an evolutionary model to provide evidence for a wide heterogeneity of required affinities between transcription factors and their binding sites in yeast. [My Copy] Pac Symp Biocomput (2008), pp. 489-500. by R. W. Lusk, M. B. Eisen posted to affinity binding_site transcription_factor variation yeast by dpollard to the group EisenLab on 2008-02-01 06:19:09 as along with 3 people and 1 group lusk maximilianh caseybrown cis-regulatory-evolution
	Frequent gain and loss of functional transcription factor binding sites. [My Copy] PLoS computational biology, Vol. 3, No. 5. (1 May 2007), e99. by Scott W. Doniger, Justin C. Fay posted to binding_site turnover by brant on 2008-01-20 02:16:09 as along with 12 people and 2 groups roys fenghezi lusk JustinCrocker pradiptaray dpollard sebastien_vigneau zwang maximilianh cisevol xili03 emptyhb EisenLab cis-regulatory-evolution
	Predicting DNA-binding sites of proteins from amino acid sequence. [My Copy] BMC Bioinformatics, Vol. 7 (2006) by C. Yan, M. Terribilini, F. Wu, R. L. Jernigan, D. Dobbs, V. Honavar posted to binding_site transcription_factor by dandaman on 2008-01-08 11:55:33 as along with 3 people kaarsinogen ameetsoni ezralanglois
	Computational prediction of the binding site of proteinase 3 to the plasma membrane [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Eric Hajjar, Maja Mihajlovic, Véronique Witko-Sarsat, Themis Lazaridis, Nathalie Reuter posted to binding_site electrostatics implicit_solvent ligand md by RamuAnandakrishnan on 2008-01-07 14:43:43 as
	Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans. [My Copy] PLoS Biol, Vol. 3, No. 12. (15 November 2005) by Matthew V V. Rockman, Matthew W W. Hahn, Nicole Soranzo, Fritz Zimprich, David B B. Goldstein, Gregory A A. Wray posted to binding_site cis_regulatory_elements human regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:55:41 as along with 10 people and 4 groups provero mbj imouthesmp indigoviolet Archaeogenetics happy_manatee djkt mgaldzic cisevol jphekman cube_and_beyond EisenLab CHIP cis-regulatory-evolution
	Detection of the signature of natural selection in humans: evidence from the Duffy blood group locus. [My Copy] Am J Hum Genet, Vol. 66, No. 5. (May 2000), pp. 1669-1679. by M. T. Hamblin, A. Di Rienzo posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard to the group EisenLab on 2007-12-05 22:53:19 as along with 1 group cis-regulatory-evolution
	Disruption of a GATA motif in the Duffy gene promoter abolishes erythroid gene expression in Duffy-negative individuals. [My Copy] Nat Genet, Vol. 10, No. 2. (June 1995), pp. 224-228. by C. Tournamille, Y. Colin, J. P. Cartron, C. Le Van Kim posted to binding_site cis_regulatory_elements regulatory_evolution regulatory_polymorphism regulatory_sequence_evolution turnover by dpollard to the group EisenLab on 2007-12-05 22:51:02 as along with 1 group cis-regulatory-evolution
	Chance caught on the wing: cis-regulatory evolution and the origin of pigment patterns in Drosophila. [My Copy] Nature, Vol. 433, No. 7025. (3 February 2005), pp. 481-487. by N. Gompel, B. Prud'homme, P. J. Wittkopp, V. A. Kassner, S. B. Carroll posted to binding_site cis_regulatory_elements drosophila pigmentation regulatory_evolution regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:48:37 as along with 7 people and 2 groups athma balabu emilyhare adepace cisevol emptyhb pradiptaray EisenLab cis-regulatory-evolution
	Regulation of Body Pigmentation by the Abdominal-B Hox Protein and Its Gain and Loss in Drosophila Evolution [My Copy] Cell, Vol. 125, No. 7. (30 June 2006), pp. 1387-1399. by Sangyun Jeong, Antonis Rokas, Sean B. Carroll posted to binding_site cis_regulatory_elements pigmentation regulatory_evolution regulatory_sequence_evolution turnover by dpollard on 2007-12-05 22:44:47 as along with 2 people and 2 groups emptyhb emilyhare EisenLab cis-regulatory-evolution
	Anatomy of Escherichia coli sigma70 promoters [My Copy] Nucl. Acids Res., Vol. 35, No. 3. (16 February 2007), pp. 771-788. by Ryan K. Shultzaberger, Zehua Chen, Karen A. Lewis, Thomas D. Schneider posted to bacteria binding_site bioinformatics promotor by stajich on 2007-11-27 01:29:39 as along with 1 person aalibes
	Nucleotide sequence of an RNA polymerase binding site at an early T7 promoter. [My Copy] Proc Natl Acad Sci U S A, Vol. 72, No. 3. (March 1975), pp. 784-788. by D. Pribnow posted to binding_site cis_regulatory_elements conservation seminal_paper by dpollard to the group EisenLab on 2007-11-26 00:28:07 as
	Turnover of binding sites for transcription factors involved in early Drosophila development. [My Copy] Gene, Vol. 310 (22 May 2003), pp. 215-220. by J. Costas, F. Casares, J. Vieira posted to binding_site cis_regulatory_elements drosophila turnover by dpollard to the group EisenLab on 2007-11-21 01:22:24 as along with 1 person and 1 group cisevol cis-regulatory-evolution
	Molecular dynamics simulations of ethanol binding to the transmembrane domain of the glycine receptor: Implications for the channel potentiation mechanism [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Mary H. Cheng, Rob D. Coalson, Michael Cascio posted to binding_site ligand md by RamuAnandakrishnan on 2007-11-15 19:08:17 as along with 1 person LamBras
	Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster [My Copy] PLoS Comput Biol, Vol. 3, No. 1. (19 January 2007), e7. by Thomas A. Down, Casey M. Bergman, Jing Su, Tim J. P. Hubbard posted to binding_site cis_regulatory_elements drosophila motif_detection by dpollard on 2007-11-14 21:19:05 as along with 12 people and 1 group bsamal daveGerrard ychromosome timhubbard lusk wowalz indigoviolet dquest SeungjoonOh nklee emptyhb isimpson EisenLab
	Characterization of local geometry of protein surfaces with the visibility criterion [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Bin Li, Srinivasan Turuvekere, Manish Agrawal, David La, Karthik Ramani, Daisuke Kihara posted to binding_site qualifier by RamuAnandakrishnan on 2007-11-03 20:36:13 as
	Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting [My Copy] Genome Res., Vol. 12, No. 5. (1 May 2002), pp. 739-748. by Mathieu Blanchette, Martin Tompa posted to ab_initio binding_site conservation method prediction by dpollard to the group EisenLab on 2007-11-01 00:41:11 as along with 7 people and 1 group wowalz coldmeadow chad_davis balajis lyongu dquest csdhwang cis-regulatory-evolution
	Regulatory element detection using correlation with expression [My Copy] Nature Genetics, Vol. 27, No. 2. (01 February 2001), pp. 167-174. by Harmen J. Bussemaker, Hao Li, Eric D. Siggia posted to ab_initio binding_site gene_expression prediction by dpollard to the group EisenLab on 2007-11-01 00:10:36 as along with 5 people and 1 group roys nickluscombe heliopais tvdbulck isimpson EBI-regulation
	Distance preferences in the arrangement of binding motifs and hierarchical levels in organization of transcription regulatory information. [My Copy] Nucleic Acids Res, Vol. 31, No. 20. (15 October 2003), pp. 6016-6026. by V. J. Makeev, A. P. Lifanov, A. G. Nazina, D. A. Papatsenko posted to binding_site cis_regulatory_elements drosophila grammar helical_phasing by dpollard to the group EisenLab on 2007-10-31 22:40:43 as along with 2 people and 1 group lusk oannes Regulomics_UCHSC
	Interaction of Gal repressor with inducer and operator: induction of gal transcription from repressor-bound DNA. [My Copy] Proc Natl Acad Sci U S A, Vol. 94, No. 7. (1 April 1997), pp. 2957-2962. by S. Chatterjee, Y. N. Zhou, S. Roy, S. Adhya posted to binding_site cis_regulatory_elements grammar steric_repression yeast by dpollard to the group EisenLab on 2007-10-31 21:26:00 as

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prediction	25
cis_regulatory_elements	24
turnover	19
transcription_factor	16
method	15
drosophila	12
eisen_journal_club	11
ab_initio	9
round_robin	9
yeast	9
affinity	7
dec09	7
regulatory_evolution	7
regulatory_sequence_evolution	7
conservation	6
motif	6
structure	6
binding	5
mirna	5
promotor	5
protein	5
regulatory_polymorphism	5
variation	5
conserved	4
evolution	4
grammar	4
ligand-protein-binding	4
motif_detection	4
regulatory_sequence	4
screening	4
theory	4
algorithm	3
alignment	3
averaging_problem	3
binding_interactions	3
bioinformatics	3
conformational_changes	3
conformational_selection	3
in_vitro	3
induced_fit	3
ligand	3
motifs	3
nov09	3
protein-structure	3
shape	3
site	3
ubiquitin	3
venky_presented	3
biophysical_model	2
characterization	2
chipseq	2
clustering	2
comparative	2
comparative_genomics	2
computational_biology	2
conformation	2
crm	2
dan_presented	2
even-skipped	2
evodevo	2
free_energy	2
gene_expression	2
gene_regulation	2
gradient	2
grid	2
helical_phasing	2
hox	2
hts	2
in_depth_suggestion	2
in_silico	2
interactions	2
mammal	2
markov	2
md	2
methods	2
mifs	2
model	2
pattern	2
phylogeny	2
polymorphism	2
protease_inhibitors	2
pwm	2
qualifier	2
quantum_mechanics	2
rapid	2
rich_presented	2
scaffold	2
selectivity	2
seminal_paper	2
shortread	2
simulation_methods	2
smallrna	2
software	2
solexa	2
steric_repression	2
stuart_presented	2
surface	2
target	2
transcription	2
vertibrates	2

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