Tag binning [62 articles] Export

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	Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models [My Copy] Nature Methods, Vol. 6, No. 9. (02 August 2009), pp. 673-676. by Arthur Brady, Steven L. Salzberg posted to second-generation-sequencing metagenomics metagenomic-data-analysis binning by idoerg on 2009-11-28 18:46:05 as along with 8 people and 4 groups azazello robertrentzsch dakelley skembel Thaverkamp sharpton jbhiatt stajich Orengo Group Journal Picks iSEEM Journal picks Mycology
	Velvet: Algorithms for de novo short read assembly using de Bruijn graphs [My Copy] Genome Research In Genome Research, Vol. 18, No. 5. (18 May 2008), pp. 821-829. by Daniel R. Zerbino, Ewan Birney posted to software_system metagenomics dna_sequence_data de_bruijn_graph computational_analysis bioinformatics binning assembly by ajsferreira on 2009-11-25 10:51:32 as along with 42 people and 3 groups vplagnol bedo jwhitney cthachuk hzoltan azazello ajbattle jmanning2k n00c carlk pachorip APRegier jbhiatt jonilaserson operon jahwa jsatkosk sandfire thegoose2 katholt robsyme djkt hpaces AaronDarling mhz idoerg jmcq dswan dakelley jasontsai acn druvus natstreet nmohelli stajich farhat iris42 tharris Neeperando sharpton GustavoLacerda gdb Bioinformatics DeNovoAssembly-SIMR Mycology
	Unsupervised statistical clustering of environmental shotgun sequences [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 316. by Andrey Kislyuk, Srijak Bhatnagar, Jonathan Dushoff, Joshua Weitz posted to software_system sequence_fragments metagenomics genomic_clusters dna_sequence_data distributions complexity bioinformatics binning by ajsferreira on 2009-11-25 10:32:18 as along with 5 people elipapa nuin dakelley druvus BioInfoCites
	Binning sequences using very sparse labels within a metagenome [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (28 April 2008), 215. by Chon K. Chan, Arthur Hsu, Saman Halgamuge, Sen L. Tang posted to sequence_fragments metagenomics labels dna_sequence_data bioinformatics binning by ajsferreira on 2009-11-25 10:19:24 as along with 14 people and 3 groups skembel esyoun sriesenfeld jmeppley dakelley Thaverkamp idoerg azazello druvus alexl mjetten werwiesel jlgreen djkt Bioinformatics microbiology_nijmegen iSEEM
	SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences [My Copy] Bioinformatics, Vol. 25, No. 14. (15 July 2009), pp. 1722-1730. by M. Monzoorul Haque, Tarini S. Ghosh, Dinakar Komanduri, Sharmila S. Mande posted to binning metagenomics orthology taxonomy by sharpton on 2009-07-16 21:31:38 as along with 5 people and 1 group dakelley sriesenfeld djkt guhjy operon iSEEM
	Symbiosis insights through metagenomic analysis of a microbial consortium. [My Copy] Nature, Vol. 443, No. 7114. (26 October 2006), pp. 950-955. by Tanja Woyke, Hanno Teeling, Natalia N. Ivanova, et al.Marcel Huntemann, Michael Richter, Frank Oliver O. Gloeckner, Dario Boffelli, Iain J. Anderson, Kerrie W. Barry, Harris J. Shapiro, Ernest Szeto, Nikos C. Kyrpides, Marc Mussmann, Rudolf Amann, Claudia Bergin, Caroline Ruehland, Edward M. Rubin, Nicole Dubilier posted to binning metagenomics by azazello on 2009-05-13 21:44:26 as along with 5 people idoerg michC bluto wenhan mcox
	Use of simulated data sets to evaluate the fidelity of metagenomic processing methods. [My Copy] Nature methods, Vol. 4, No. 6. (29 June 2007), pp. 495-500. by Konstantinos Mavromatis, Natalia Ivanova, Kerrie Barry, et al.Harris Shapiro, Eugene Goltsman, Alice C. McHardy, Isidore Rigoutsos, Asaf Salamov, Frank Korzeniewski, Miriam Land, Alla Lapidus, Igor Grigoriev, Paul Richardson, Philip Hugenholtz, Nikos C. Kyrpides posted to binning bioinformatics metagenomics simulation by Thaverkamp on 2009-05-11 15:19:13 as along with 17 people and 5 groups dutilh dakelley taylor73 sriesenfeld skembel druvus Yanno oamg jmeppley bluto azazello GustavoLacerda carlk alexl mjetten jlgreen djkt Glimcher_Lab Bioinformatics microbiology_nijmegen Green Lab iSEEM
	MsatAllele_1.0: An R Package to Visualize the Binning of Microsatellite Alleles [My Copy] J Hered (6 January 2009), esn110. by Filipe Alberto posted to alogrithm binning fingerprinting peaks by rec3141 on 2009-05-07 01:41:41 as along with 1 person druvus
	Phylogenetic classification of short environmental DNA fragments [My Copy] Nucl. Acids Res., Vol. 36, No. 7. (19 February 2008), pp. gkn038-2239. by Lutz Krause, Naryttza N. Diaz, Alexander Goesmann, et al.Scott Kelley, Tim W. Nattkemper, Forest Rohwer, Robert A. Edwards, Jens Stoye posted to binning carma metagenomics by idoerg on 2009-04-14 01:07:27 as along with 7 people esyoun ematsen dakelley sriesenfeld skembel hpaces vrich
	Using growing self-organising maps to improve the binning process in environmental whole-genome shotgun sequencing. [My Copy] Journal of biomedicine & biotechnology, Vol. 2008, No. 1. (2008) by Chon-Kit Kenneth K. Chan, Arthur L. Hsu, Sen-Lin L. Tang, Saman K. Halgamuge posted to binning gsom self-organizing-map self-organizing-maps som by idoerg on 2009-04-13 23:33:39 as along with 4 people dakelley azazello druvus alexisfjdufresne
	MEGAN analysis of metagenomic data [My Copy] Genome Research, Vol. 17, No. 3. (06 February 2007), pp. 377-386. by D. H. Huson, A. F. Auch, J. Qi, S. C. Schuster posted to binning metagenomics software tools by idoerg on 2009-04-06 22:23:41 as along with 15 people and 2 groups ajsferreira taylor73 esyoun dakelley Thaverkamp druvus guhjy treangen jmeppley azazello wenhan carpi alexl mjetten hpaces anammox microbiology_nijmegen
	Accurate phylogenetic classification of variable-length DNA fragments [My Copy] Nature Methods, Vol. 4, No. 1. (10 December 2006), pp. 63-72. by Alice C. Mchardy, Héctor G. Martín, Aristotelis Tsirigos, Philip Hugenholtz, Isidore Rigoutsos posted to binning metagenomics phylogenetics phypythia software tools by idoerg on 2009-04-06 22:19:29 as along with 10 people and 4 groups dakelley esyoun Thaverkamp skembel jmeppley bluto azazello wenhan jlgreen djkt Bioinformatics MBLAB Green Lab iSEEM
	TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (26 October 2004), 163. by Hanno Teeling, Jost Waldmann, Thierry Lombardot, Margarete Bauer, Frank Glockner posted to binning metagenomics software tools by idoerg on 2009-04-06 22:08:29 as along with 8 people and 1 group Thaverkamp azazello druvus jmeppley michC bluto wenhan werwiesel Bioinformatics
	Exceptional motifs in different Markov chain models for a statistical analysis of DNA sequences. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 2, No. 3. (1995), pp. 417-437. by S. Schbath, B. Prum, E. de Turckheim posted to binning kmers markov-chains metagenomics by idoerg on 2009-04-05 20:53:42 as
	TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 56. by Naryttza Diaz, Lutz Krause, Alexander Goesmann, Karsten Niehaus, Tim Nattkemper posted to binning by bluto on 2009-02-15 09:28:31 as along with 5 people and 1 group halinat esyoun dakelley jonathaneisen jmeppley iSEEM
	Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 16. (1999), pp. 9184-9189. by Allan Campbell, Jan Mrázek, Samuel Karlin posted to binning by azazello on 2009-01-05 19:57:19 as
	Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing [My Copy] PLoS Genet, Vol. 4, No. 11. (21 November 2008), e1000255. by Susan M. Huse, Les Dethlefsen, Julie A. Huber, David M. Welch, David A. Relman, Mitchell L. Sogin posted to binning by azazello on 2008-12-12 04:38:17 as along with 4 people and 2 groups Huub_odc sconlan skembel djkt microbiology_nijmegen iSEEM
	The marine viromes of four oceanic regions. [My Copy] PLoS Biol, Vol. 4, No. 11. (November 2006) by F. E. Angly, B. Felts, M. Breitbart, et al.P. Salamon, R. A. Edwards, C. Carlson, A. M. Chan, M. Haynes, S. Kelley, H. Liu, J. M. Mahaffy, J. E. Mueller, J. Nulton, R. Olson, R. Parsons, S. Rayhawk, C. A. Suttle, F. Rohwer posted to binning by azazello on 2008-12-12 04:34:03 as along with 7 people and 1 group hwright anphony balicea bluto xingxu djkt jlgreen iSEEM
	Functional metagenomic profiling of nine biomes [My Copy] Nature, Vol. 452, No. 7187. (12 March 2008), pp. 629-632. by Elizabeth A. Dinsdale, Robert A. Edwards, Dana Hall, et al.Florent Angly, Mya Breitbart, Jennifer M. Brulc, Mike Furlan, Christelle Desnues, Matthew Haynes, Linlin Li, Lauren McDaniel, Mary A. Moran, Karen E. Nelson, Christina Nilsson, Robert Olson, John Paul, Beltran R. Brito, Yijun Ruan, Brandon K. Swan, Rick Stevens, David L. Valentine, Rebecca V. Thurber, Linda Wegley, Bryan A. White, Forest Rohwer posted to binning by azazello on 2008-12-12 04:31:06 as along with 17 people and 6 groups idoerg Thaverkamp shuzhens anphony michaelbarton skembel guhjy djkt neils kinestetika bluto oelemento alexisfjdufresne vaulot jmeppley vrich jlgreen Savage Lab, UCLA microbiology_nijmegen Microbial-Ecology Papers recommended by the Roscoff Plankton Group Green Lab iSEEM
	The Sorcerer II Global Ocean Sampling Expedition: Expanding the Universe of Protein Families. [My Copy] PLoS Biol, Vol. 5, No. 3. (13 March 2007) by Shibu Yooseph, Granger Sutton, Douglas B B. Rusch, et al.Aaron L L. Halpern, Shannon J J. Williamson, Karin Remington, Jonathan A A. Eisen, Karla B B. Heidelberg, Gerard Manning, Weizhong Li, Lukasz Jaroszewski, Piotr Cieplak, Christopher S S. Miller, Huiying Li, Susan T T. Mashiyama, Marcin P P. Joachimiak, Christopher van Belle, John-Marc M. Chandonia, David A A. Soergel, Yufeng Zhai, Kannan Natarajan, Shaun Lee, Benjamin J J. Raphael, Vineet Bafna, Robert Friedman, Steven E E. Brenner, Adam Godzik, David Eisenberg, Jack E E. Dixon, Susan S S. Taylor, Robert L L. Strausberg, Marvin Frazier, J Craig C. Venter posted to binning by azazello on 2008-12-12 04:26:37 as along with 9 people and 4 groups Thaverkamp skembel AaronDarling jmeppley kaspermunch michC mjetten vrich jlgreen Bioinformatics microbiology_nijmegen Green Lab iSEEM
	How many species of prokaryotes are there? [My Copy] Proc Natl Acad Sci U S A, Vol. 99, No. 16. (6 August 2002), pp. 10234-10236. by B. B. Ward posted to binning by azazello on 2008-12-06 00:04:46 as along with 1 person aswin
	Proteorhodopsin phototrophy in the ocean. [My Copy] Nature, Vol. 411, No. 6839. (14 June 2001), pp. 786-789. by O. Béjà, E. N. Spudich, J. L. Spudich, M. Leclerc, E. F. DeLong posted to binning by azazello on 2008-12-05 23:57:38 as along with 5 people and 2 groups hwright kinestetika bluto jdelcampo beatrizfernandez microbiology_nijmegen Microbial-Ecology
	Vertical distribution of picoeukaryotic diversity in the Sargasso Sea [My Copy] Environmental Microbiology, Vol. 0, No. 0. (0000), pp. ???-???. by Fabrice Not, Rudolf Gausling, Farooq Azam, John F. Heidelberg, Alexandra Z. Worden posted to binning by azazello on 2008-12-05 23:52:42 as along with 1 person and 1 group Stenuite African_Lakes_Limnology
	Sequencing and analysis of Neanderthal genomic DNA. [My Copy] Science, Vol. 314, No. 5802. (17 November 2006), pp. 1113-1118. by J. P. Noonan, G. Coop, S. Kudaravalli, et al.D. Smith, J. Krause, J. Alessi, F. Chen, D. Platt, S. Pääbo, J. K. Pritchard, E. M. Rubin posted to binning by azazello on 2008-12-05 23:44:00 as along with 10 people and 1 group kaspermunch Archaeogenetics theseuskf biblio24 vplagnol Mochimasa ibuch ryanraaum hpaces myourshaw Bioinformatics
	Accurate multiplex polony sequencing of an evolved bacterial genome. [My Copy] Science (New York, N.Y.), Vol. 309, No. 5741. (9 September 2005), pp. 1728-1732. by Jay Shendure, Gregory J. Porreca, Nikos B. Reppas, et al.Xiaoxia Lin, John P. McCutcheon, Abraham M. Rosenbaum, Michael D. Wang, Kun Zhang, Robi D. Mitra, George M. Church posted to binning mgs-nst by azazello on 2008-12-05 23:24:34 as along with 10 people and 2 groups rshe jbhiatt frohike arve balajis dchughes AaronDarling xingxu nhp bozdagd G4ID Genetics-of-Gambling
	Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. [My Copy] Appl. Environ. Microbiol., Vol. 59, No. 3. (1 March 1993), pp. 695-700. by G. Muyzer, E. C. de Waal, A. G. Uitterlinden posted to binning by azazello on 2008-12-05 22:55:23 as along with 1 person florisbuijzen
	Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. [My Copy] Appl. Environ. Microbiol., Vol. 56, No. 6. (1 June 1990), pp. 1919-1925. by R. I. Amann, B. J. Binder, R. J. Olson, S. W. Chisholm, R. Devereux, D. A. Stahl posted to binning by azazello on 2008-12-05 22:54:37 as along with 2 people vishnyakov jdelcampo
	Critical issues in bacterial phylogeny. [My Copy] Theoretical population biology, Vol. 61, No. 4. (June 2002), pp. 423-434. by R. S. Gupta, E. Griffiths posted to binning by azazello on 2008-12-05 22:50:53 as
	Likelihood, Bayesian and MCMC Methods in Quantitative Genetics [My Copy] (22 March 2007) by Daniel Sorensen, Daniel Gianola posted to binning by azazello on 2008-12-05 21:51:21 as along with 2 people ilyashl CharlesM
	Genomic signature: characterization and classification of species assessed by chaos game representation of sequences [My Copy] Mol Biol Evol, Vol. 16, No. 10. (1 October 1999), pp. 1391-1399. by P. J. Deschavanne, A. Giron, J. Vilain, G. Fagot, B. Fertil posted to binning by azazello on 2008-12-05 18:57:35 as along with 1 person nuin
	Application of tetranucleotide frequencies for the assignment of genomic fragments [My Copy] Environmental Microbiology, Vol. 6, No. 9. (September 2004), pp. 938-947. by Hanno Teeling, Anke Meyerdierks, Margarete Bauer, Rudolf Amann, Frank O. Glöckner posted to binning by azazello on 2008-12-03 19:52:09 as along with 7 people dakelley Thaverkamp druvus michC bluto george_g mcox
	Bayesian classifiers for detecting HGT using fixed and variable order markov models of genomic signatures [My Copy] Bioinformatics, Vol. 22, No. 5. (1 March 2006), pp. 517-522. by Daniel Dalevi, Devdatt Dubhashi, Malte Hermansson posted to binning by azazello on 2008-12-02 11:35:56 as along with 2 people Ayest karfunkel
	Detecting Horizontally Transferred and Essential Genes Based on Dinucleotide Relative Abundance [My Copy] DNA Res, Vol. 15, No. 5. (1 October 2008), pp. 267-276. by Robert H. Baran, Hanseok Ko posted to binning by azazello on 2008-12-02 11:31:17 as along with 1 person treangen
	Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier. [My Copy] Genome Res, Vol. 11, No. 8. (August 2001), pp. 1404-1409. by R. Sandberg, G. Winberg, C. I. Bränden, A. Kaske, I. Ernberg, J. Cöster posted to binning by azazello on 2008-12-01 15:13:29 as along with 4 people esyoun jmeppley bluto karfunkel
	Genes from Nine Genomes Are Separated into Their Organisms in the Dinucleotide Composition Space [My Copy] DNA Res, Vol. 5, No. 5. (1 January 1998), pp. 251-259. by Hiroshi Nakashima, Motonori Ota, Ken Nishikawa, Tatsuo Ooi posted to binning by azazello on 2008-12-01 15:12:38 as along with 3 people antariksh bluto karfunkel
	Bioinformatics for Whole-Genome Shotgun Sequencing of Microbial Communities [My Copy] PLoS Comput Biol, Vol. 1, No. 2. (12 July 2005), e24. by Kevin Chen, Lior Pachter posted to binning by azazello on 2008-11-25 19:58:56 as along with 12 people and 3 groups Julien_Fayolle ajsferreira hwright dakelley knaseanka ana jmeppley dullhunk bluto wenhan djkt druvus structural_bioinformatics Bioinformatics iSEEM
	Probing Metagenomics by Rapid Cluster Analysis of Very Large Datasets [My Copy] PLoS ONE, Vol. 3, No. 10. (10 October 2008), e3375. by Weizhong Li, John C. Wooley, Adam Godzik posted to binning by azazello on 2008-11-25 19:53:30 as along with 2 people skembel reyez
	Informatics for unveiling hidden genome signatures. [My Copy] Genome research, Vol. 13, No. 4. (April 2003), pp. 693-702. by T. Abe, S. Kanaya, M. Kinouchi, Y. Ichiba, T. Kozuki, T. Ikemura posted to binning by azazello on 2008-11-25 19:44:46 as along with 1 person jmeppley
	Evolutionary implications of microbial genome tetranucleotide frequency biases. [My Copy] Genome Res, Vol. 13, No. 2. (February 2003), pp. 145-158. by D. T. Pride, R. J. Meinersmann, T. M. Wassenaar, M. J. Blaser posted to binning by azazello on 2008-11-25 19:38:40 as along with 1 person operon
	Pervasive properties of the genomic signature [My Copy] BMC Genomics, Vol. 3, No. 1. (2002) by Robert Jernigan, Robert Baran posted to binning by azazello on 2008-11-25 19:34:38 as along with 1 person karfunkel
	Dinucleotide relative abundance extremes: a genomic signature [My Copy] Trends in Genetics, Vol. 11, No. 7. (July 1995), pp. 283-290. by Samuel Kariin, Chris Burge posted to binning by azazello on 2008-11-25 19:33:31 as along with 2 people jmeppley karfunkel
	The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific [My Copy] PLoS Biol, Vol. 5, No. 3. (13 March 2007), e77. by Douglas B. Rusch, Aaron L. Halpern, Granger Sutton, et al.Karla B. Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A. Eisen, Jeff M. Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E. Venter, Kelvin Li, Saul Kravitz, John F. Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I. Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E. Eguiarte, David M. Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R. Ferrari, Robert L. Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, J. Craig Venter posted to binning by azazello on 2008-11-25 19:20:53 as along with 17 people and 5 groups antonkratz dakelley maria_hauser mlangill AaronDarling skembel aramata jmeppley kaspermunch michC jdelcampo stajich skoch3 beatrizfernandez kinestetika Thaverkamp djkt Bioinformatics Microbial-Ecology Koch_Lab microbiology_nijmegen iSEEM
	Metabolic complementarity and genomics of the dual bacterial symbiosis of sharpshooters. [My Copy] PLoS Biol, Vol. 4, No. 6. (June 2006) by D. Wu, S. C. Daugherty, S. E. Van Aken, et al.G. H. Pai, K. L. Watkins, H. Khouri, L. J. Tallon, J. M. Zaborsky, H. E. Dunbar, P. L. Tran, N. A. Moran, J. A. Eisen posted to binning by azazello on 2008-11-25 19:09:10 as along with 3 people and 1 group idoerg operon djkt iSEEM
	A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder. [My Copy] Science (6 September 2007) by Diana L L. Cox-Foster, Sean Conlan, Edward C C. Holmes, et al.Gustavo Palacios, Jay D D. Evans, Nancy A A. Moran, Phenix-Lan L. Quan, Thomas Briese, Mady Hornig, David M M. Geiser, Vince Martinson, Dennis Vanengelsdorp, Abby L L. Kalkstein, Andrew Drysdale, Jeffrey Hui, Junhui Zhai, Liwang Cui, Stephen K K. Hutchison, Jan Fredrik F. Simons, Michael Egholm, Jeffery S S. Pettis, W Ian I. Lipkin posted to binning by azazello on 2008-11-25 19:07:41 as along with 9 people and 3 groups pauldobson GustavoLacerda jmeppley bluto carpi mellabee jlgreen sconlan hpaces Bioinformatics Green Lab iSEEM
	Community structure and metabolism through reconstruction of microbial genomes from the environment. [My Copy] Nature, Vol. 428, No. 6978. (4 March 2004), pp. 37-43. by G. W. Tyson, J. Chapman, P. Hugenholtz, et al.E. E. Allen, R. J. Ram, P. M. Richardson, V. V. Solovyev, E. M. Rubin, D. S. Rokhsar, J. F. Banfield posted to binning by azazello on 2008-11-25 19:07:06 as along with 6 people and 1 group kinestetika bpb bluto wenhan niallhaslam mcox microbiology_nijmegen
	A Molecular View of Microbial Diversity and the Biosphere [My Copy] Science, Vol. 276, No. 5313. (2 May 1997), pp. 734-740. by Norman R. Pace posted to binning by azazello on 2008-11-25 19:02:46 as along with 4 people and 1 group idoerg jmeppley jdelcampo mcox Microbial-Ecology
	Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. [My Copy] Proc Natl Acad Sci U S A, Vol. 82, No. 20. (October 1985), pp. 6955-6959. by D. J. Lane, B. Pace, G. J. Olsen, D. A. Stahl, M. L. Sogin, N. R. Pace posted to binning by azazello on 2008-11-25 19:02:27 as along with 1 person knaseanka
	The uncultured microbial majority. [My Copy] Annu Rev Microbiol, Vol. 57 (2003), pp. 369-394. by M. S. Rappé, S. J. Giovannoni posted to binning by azazello on 2008-11-25 19:01:53 as along with 3 people idoerg skato_toyaku jmeppley
	MetaSim—A Sequencing Simulator for Genomics and Metagenomics [My Copy] PLoS ONE, Vol. 3, No. 10. (8 October 2008), e3373. by Daniel C. Richter, Felix Ott, Alexander F. Auch, Ramona Schmid, Daniel H. Huson posted to binning by azazello on 2008-11-25 18:21:30 as along with 10 people and 2 groups jonilaserson polivares michaelbarton idoerg sriesenfeld skembel guhjy hpaces druvus nuin BergmanLab iSEEM
	Strand compositional asymmetry in bacterial and large viral genomes [My Copy] Proceedings of the National Academy of Sciences, Vol. 95, No. 7. (31 March 1998), pp. 3720-3725. by Jan Mrazek, Samuel Karlin posted to binning by azazello on 2008-10-30 16:13:45 as along with 1 person and 1 group karfunkel WeitzGroup

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metagenomics	27
bioinformatics	10
dna_sequence_data	6
qual	6
otu	5
phylogenetics	4
sequence_fragments	4
software	4
software_system	4
assembly	3
tools	3
classification	2
complexity	2
computational_analysis	2
de_bruijn_graph	2
distributions	2
genomic_clusters	2
imm	2
labels	2
metagenomic	2
mgs-nst	2
ploscb08	2
self-organizing-map	2
simulation	2
som	2
taxonomy	2
3pcf	1
algorithm	1
alogrithm	1
carma	1
clustering	1
codes	1
coding	1
entropy	1
fingerprinting	1
gs05	1
gsom	1
kmers	1
markov-chains	1
metagenomic-data-analysis	1
methods	1
nested	1
orthology	1
peaks	1
phypythia	1
random	1
second-generation-sequencing	1
self-organizing-maps	1
source	1
turbo	1

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