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Tag bioe594 [22 articles]

Recent papers classified by the tag bioe594.
  • Predicting the phenotypic effects of non-synonymous single nucleotide polymorphisms based on support vector machines
    BMC Bioinformatics, Vol. 8 (16 November 2007), 450.
    by Jian Tian, Ningfeng Wu, Xuexia Guo, Jun Guo, Juhua Zhang, Yunliu Fan
    posted to bioe594 forrest random svm by kallberg on 2008-06-17 20:28:33 as ** along with 1 person jyuh
  • Ensemble machine learning on gene expression data for cancer classification.
    Applied bioinformatics, Vol. 2, No. 3 Suppl. (2003)
    by AC Tan, D Gilbert
    posted to bioe594 boosting ensemble by kallberg on 2008-06-17 20:37:04 as **
  • Predicting the sub-cellular location of proteins from text using support vector machines.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2002), pp. 374-385.
    by BJ Stapley, LA Kelley, MJ Sternberg
    posted to bioe594 mining text by kallberg on 2008-06-17 20:47:41 as **
  • A two-stage classifier for identification of protein-protein interface residues.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by C Yan, D Dobbs, V Honavar
    posted to bayseian bioe594 svm by kallberg on 2008-06-17 20:34:08 as ** along with 1 person bicko
  • Modeling of signal-response cascades using decision tree analysis
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 2027-2035.
    by Sampsa Hautaniemi, Sourabh Kharait, Akihiro Iwabu, Alan Wells, Douglas A Lauffenburger
    posted to bioe594 biology systems by kallberg on 2008-06-17 20:43:44 as **
  • Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments.
    Journal of molecular biology, Vol. 247, No. 1. (17 March 1995), pp. 11-15.
    by AA Salamov, VV Solovyev
    posted to bioe594 nearest neighbour by kallberg on 2008-06-17 20:33:28 as **
  • Molecular classification of multiple tumor types.
    Bioinformatics, Vol. 17 Suppl 1 (2001)
    by CH Yeang, S Ramaswamy, P Tamayo, S Mukherjee, RM Rifkin, M Angelo, M Reich, E Lander, J Mesirov, T Golub
    posted to bioe594 boosting svm by kallberg on 2008-06-17 20:40:39 as ** along with 1 person ggrot
  • A comprehensive evaluation of multicategory classification methods for microarray gene expression cancer diagnosis
    Bioinformatics, Vol. 21, No. 5. (01 March 2005), pp. 631-643.
    by Alexander Statnikov, Constantin F Aliferis, Ioannis Tsamardinos, Douglas Hardin, Shawn Levy
    posted to bioe594 boosting svm by kallberg on 2008-06-17 20:41:12 as ** along with 6 people chad_davis archroad dimatura srp33 slevy03 vmsr
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
    by OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein
    posted to bioe594 feature gene selection by kallberg on 2008-06-17 20:22:28 as ** along with 17 people and 2 groups BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards Evangelia isimpson carlk srp33 frohike kdl Bioinformatics
  • Recognition of protein/gene names from text using an ensemble of classifiers.
    BMC Bioinformatics, Vol. 6 Suppl 1 (2005)
    by G Zhou, D Shen, J Zhang, J Su, S Tan
    posted to bioe594 mining text by kallberg on 2008-06-17 20:47:07 as ** along with 2 people and 1 group bundschu johnkork generif_paper
  • A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis.
    Bioinformatics (Oxford, England), Vol. 18, No. 2. (February 2002), pp. 235-243.
    by M Sebban, I Mokrousov, N Rastogi, C Sola
    posted to bioe594 dna tree by kallberg on 2008-06-17 20:29:08 as **
  • A computational approach to identify genes for functional RNAs in genomic sequences
    Nucl. Acids Res., Vol. 29, No. 19. (1 October 2001), pp. 3928-3938.
    by Richard J Carter, Inna Dubchak, Stephen R Holbrook
    posted to bioe594 neurale rna svm by kallberg on 2008-06-17 20:23:37 as ** along with 3 people and 2 groups marcius arcticrasta mtagaya BioinfoCIPF SGU-CIPF
  • Prediction of protein subcellular locations using fuzzy k-NN method.
    Bioinformatics (Oxford, England), Vol. 20, No. 1. (1 January 2004), pp. 21-28.
    by Y Huang, Y Li
    posted to bioe594 nearest neighbour by kallberg on 2008-06-17 20:34:49 as **
  • Computational Gene Prediction Using Multiple Sources of Evidence
    Genome Res., Vol. 14, No. 1. (1 January 2004), pp. 142-148.
    by Jonathan E Allen, Mihaela Pertea, Steven L Salzberg
    posted to bioe594 feature selection by kallberg on 2008-06-17 20:20:20 as **
  • Supervised machine learning techniques for the classification of metabolic disorders in newborns.
    Bioinformatics (Oxford, England), Vol. 20, No. 17. (22 November 2004), pp. 2985-2996.
    by C Baumgartner, C Böhm, D Baumgartner, G Marini, K Weinberger, B Olgemöller, B Liebl, AA Roscher
    posted to bioe594 boosting svm by kallberg on 2008-06-17 20:50:55 as **
  • Protein beta-turn prediction using nearest-neighbor method.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 40-44.
    by S Kim
    posted to bioe594 nearest neighbour by kallberg on 2008-06-17 20:32:58 as ** along with 1 person ujh
  • Joint classifier and feature optimization for comprehensive cancer diagnosis using gene expression data.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 11, No. 2-3. (2004), pp. 227-242.
    by B Krishnapuram, L Carin, AJ Hartemink
    posted to bayseian bioe594 svm by kallberg on 2008-06-17 20:36:14 as **
  • Feature selection for splice site prediction: a new method using EDA-based feature ranking.
    BMC Bioinformatics, Vol. 5 (21 May 2004)
    by Y Saeys, S Degroeve, D Aeyels, P Rouzé, Y Van de Peer
    posted to bioe594 feature selection by kallberg on 2008-06-17 20:19:47 as ** along with 1 person gpalidwor
  • Splice site identification by idlBNs.
    Bioinformatics (Oxford, England), Vol. 20 Suppl 1 (4 August 2004)
    by R Castelo, R Guigó
    posted to bayseian bioe594 site splice by kallberg on 2008-06-17 20:18:32 as **
  • Text-mining approaches in molecular biology and biomedicine.
    Drug Discov Today, Vol. 10, No. 6. (15 March 2005), pp. 439-445.
    by M Krallinger, RA Erhardt, A Valencia
    posted to bioe594 mining text by kallberg on 2008-06-17 20:45:15 as ** along with 4 people and 1 group irenas kuhn textoris josepe dbk-lab
  • Locating protein coding regions in human DNA using a decision tree algorithm.
    Journal of computational biology : a journal of computational molecular cell biology, Vol. 2, No. 3. (1995), pp. 473-485.
    by S Salzberg
    posted to bioe594 gene tree by kallberg on 2008-06-17 20:17:54 as **
  • Predicting genetic regulatory response using classification.
    Bioinformatics (Oxford, England), Vol. 20 Suppl 1 (4 August 2004)
    by M Middendorf, A Kundaje, C Wiggins, Y Freund, C Leslie
    posted to bioe594 boosting tree by kallberg on 2008-06-17 20:44:24 as **
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