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Tag bioinf [24 articles]

Recent papers classified by the tag bioinf.
  • Domain-specific language models and lexicons for tagging
    Journal of Biomedical Informatics, Vol. 38, No. 6. (December 2005), pp. 422-430.
    by Anni R Coden, Serguei V Pakhomov, Rie K Ando, Patrick H Duffy, Christopher G Chute
    posted to bioinf lm pos by student_t on 2006-06-28 17:26:02 as *** along with 3 people and 2 groups yas henk-cul RalfMitschke T_lab dbmi-nlp
  • Protein flexibility using constraints from molecular dynamics simulations
    Physical Biology, Vol. 2, No. 4. (December 2005), S137.
    by Tatyana Mamonova, Brandon Hespenheide, Rachel Straub, MF Thorpe, Maria Kurnikova
    posted to bioinf dynamicsprotein methodsprotein structure by Poincare on 2006-01-15 05:48:55 as ***** along with 1 person and 3 groups barry structural_bioinformatics Bioinformatics Algorithms
  • The Unified Medical Language System (UMLS): integrating biomedical terminology.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by O Bodenreider
    posted to bioinf medicine ontology terminology umls by kkaiser on 2007-03-30 09:44:02 as **** along with 8 people and 2 groups irenas kuhn wnpx jandot bundschu josepe leechuck sgoetz dbk-lab IEG
  • A survey of current work in biomedical text mining
    Briefings in Bioinformatics, Vol. 6, No. 1. (March 2005), pp. 57-71.
    by Aaron M Cohen, William R Hersh
    posted to bioinf nlp text_mining by kkaiser on 2007-03-29 11:24:47 as *** along with 17 people and 7 groups irenas carlblesius route145 yas natsu t11 hpiwowar fisherp biblio24 bhaddow johnkork c061978 benfqt farzanehs satre lillejul TheresaNiederberger dbk-lab Blog_and_Wiki_Research mgh-lcs hst-bmi T_lab Evidence-based-medicine IEG
  • Representation primitives, process models and patient data in computer-interpretable clinical practice guidelines: a literature review of guideline representation models.
    Int J Med Inform, Vol. 68, No. 1-3. (18 December 2002), pp. 59-70.
    by Dongwen Wang, Mor Peleg, Samson W Tu, Aziz A Boxwala, Robert A Greenes, Vimla L Patel, Edward H Shortliffe
    posted to bioinf cpg guideline review by kkaiser on 2007-04-28 17:37:38 as **** along with 1 person and 2 groups jeanhee mgh-lcs IEG
  • Knowledge representation with ontologies: Present challenges--Future possibilities
    International Journal of Human-Computer Studies, Vol. 65, No. 7. (July 2007), pp. 563-568.
    by Christopher Brewster, Kieron O'Hara
    posted to bioinf knowledge_representation ontology semantic by kkaiser on 2007-05-28 16:52:48 as **** along with 4 people and 3 groups charoy qhreul mstorga franzkurfess ecoo-pe IEG CADLab_UNIZG
  • A multi-level text mining method to extract biological relationships
    Bioinformatics Conference, 2002. Proceedings. IEEE Computer Society (2002), pp. 97-108.
    by Mathew Palakal, Matthew Stephens, Snehasis Mukhopadhyay, Rajeev Raje, Simon Rhodes
    posted to bioinf information_extraction text_mining by kkaiser on 2007-04-02 11:03:04 as ** along with 1 person and 2 groups yas T_lab IEG
  • The importance of the lexicon in tagging biological text
    Nat. Lang. Eng., Vol. 12, No. 4. (December 2006), pp. 335-351.
    by Lawrence H Smith, Thomas C Rindflesch, John W Wilbur
    posted to bioinf nlp tagging by kkaiser on 2007-03-29 15:21:35 as ** along with 1 group IEG
  • The practical impact of ontologies on biomedical informatics
    Methods Inf Med, Vol. 45 Suppl 1 (2006), pp. 124-135.
    by James J Cimino, X Zhu
    posted to bioinf biomed medicine ontology terminology by kkaiser on 2007-03-29 14:33:53 as read along with 2 people and 2 groups irenas josepe dbk-lab IEG
  • Protein structure prediction.
    Curr Opin Chem Biol, Vol. 5, No. 1. (February 2001), pp. 51-56.
    by B Al-Lazikani, J Jung, Z Xiang, B Honig
    posted to bioinf protein by aitter to the group MathBio on 2006-08-11 07:40:49 as ** along with 1 person and 2 groups fisherp Numerics Optimization
  • Conceptual data modelling for bioinformatics.
    Brief Bioinform, Vol. 3, No. 2. (June 2002), pp. 166-180.
    by E Bornberg-Bauer, NW Paton
    posted to uml modeling bioinformatics bioinf by dalloliogm to the group yeast on 2007-03-30 15:49:49 as **** along with 4 people and 3 groups irenas sgoetz angelika12 alanrw dbk-lab Web2 splicing
  • A framework for scientific data modeling and automated software development
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1678-1684.
    by Rasmus H Fogh, Wayne Boucher, Anne Pajon, Tim J Stevens, T Bhat, John Westbrook, John M Ionides, Ernest D Laue
    posted to uml modeling bioinf by dalloliogm to the group yeast on 2007-03-30 15:19:46 as **** along with 1 person and 2 groups angelika12 Web2 splicing
  • KDE Bioscience: Platform for bioinformatics analysis workflows
    Journal of Biomedical Informatics, Vol. 39, No. 4. (August 2006), pp. 440-450.
    by Qiang Lu, Pei Hao, Vasa Curcin, Weizhong He, Yuan-Yuan Li, Qing-Ming Luo, Yi-Ke Guo, Yi-Xue Li
    posted to bioinf bioinformatics programming tool wiki workflow by dalloliogm to the group yeast on 2007-03-06 15:38:30 as *** along with 1 person and 2 groups eweaver Web2 splicing
  • A general method applicable to the search for similarities in the amino acid sequence of two proteins.
    J Mol Biol, Vol. 48, No. 3. (March 1970), pp. 443-453.
    by SB Needleman, CD Wunsch
    posted to bioinf by Ema on 2008-08-04 15:08:25 as ** along with 6 people jwm dgront rabio incovoma yylin newton1234
  • Mapping and sequencing of structural variation from eight human genomes
    Nature, Vol. 453, No. 7191., pp. 56-64.
    by Jeffrey M Kidd, Gregory M Cooper, William F Donahue, Hillary S Hayden, Nick Sampas, Tina Graves, Nancy Hansen, Brian Teague, Can Alkan, Francesca Antonacci, Eric Haugen, Troy Zerr, Alice N Yamada, Peter Tsang, Tera L Newman, Eray Tüzün, Ze Cheng, Heather M Ebling, Nadeem Tusneem, Robert David, Will Gillett, Karen A Phelps, Molly Weaver, David Saranga, Adrianne Brand, Wei Tao, Erik Gustafson, Kevin Mckernan, Lin Chen, Maika Malig, Joshua D Smith, Joshua M Korn, Steven A Mccarroll, David A Altshuler, Daniel A Peiffer, Michael Dorschner, John Stamatoyannopoulos, David Schwartz, Deborah A Nickerson, James C Mullikin, Richard K Wilson, Laurakay Bruhn, Maynard V Olson, Rajinder Kaul, Douglas R Smith, Evan E Eichler
    posted to bioinf by Ema on 2008-05-11 13:32:49 as ** along with 18 people and 2 groups matthewsuderman jfr hpaces chad_davis bpb dchughes djkt balicea shikin psique kintoki kaniko aprasad vplagnol maximilianh chrisamiller jyuh skoch3 GeneGo Koch_Lab
  • Computing exact P-values for DNA motifs
    Bioinformatics, Vol. 23, No. 5. (March 2007), pp. 531-537.
    by Zhang, Jing, Jiang, Bo, Li, Ming, Tromp, John, Zhang, Xuegong, Zhang, Q Michael
    posted to bioinf by Ema on 2007-12-12 15:08:19 as ** along with 2 people GustavoLacerda zhouyu
  • Improved tools for biological sequence comparison.
    Proc Natl Acad Sci U S A, Vol. 85, No. 8. (April 1988), pp. 2444-2448.
    by WR Pearson, DJ Lipman
    posted to bioinf by Ema on 2008-05-15 12:18:54 as ** along with 9 people and 2 groups arcticrasta ffranca gurkanbebek bsmagic CitoJam lusk cjeans sujaikumar bozdagd Bioinformatics bioinplant
  • Adjusted P Values for Genome-Wide Scans
    Genetics, Vol. 164, No. 4. (1 August 2003), pp. 1683-1687.
    by Theodore C Lystig
    posted to bioinf by Ema on 2007-12-17 12:13:19 as **
  • Estimation and assessment of raw copy numbers at the single locus level
    Bioinformatics, Vol. 24, No. 6. (15 March 2008), pp. 759-767.
    by H Bengtsson, R Irizarry, B Carvalho, TP Speed
    posted to bioinf by Ema on 2008-05-04 12:20:50 as ** along with 1 person djkt
  • Modern tools for identification of nucleic acid-binding proteins.
    Biochimie (12 April 2008)
    by Nadia Hégarat, Jean-Christophe C François, Danièle Praseuth
    posted to bioinf by Ema on 2008-05-11 16:04:21 as ** along with 1 person jyuh
  • Estimating the tempo and mode of gene family evolution from comparative genomic data
    Genome Res., Vol. 15, No. 8. (1 August 2005), pp. 1153-1160.
    by Matthew W Hahn, Tijl De Bie, Jason E Stajich, Chi Nguyen, Nello Cristianini
    posted to bioinf by Ema on 2008-05-15 21:51:54 as **
  • Computational Epigenetics.
    Bioinformatics (17 November 2007)
    by Christoph Bock, Thomas Lengauer
    posted to bioinf by Ema on 2008-05-04 12:19:31 as ** along with 11 people and 1 group sebastien_vigneau ealloza djkt frohike timflutre cjeans epigenetics cabbagezs barriot Thomasah jyuh Bioinformatics
  • The nonconserved wrapping of conserved protein folds reveals a trend toward increasing connectivity in proteomic networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2823-2827.
    by A Fernández, R Scott, RS Berry
    posted to bioinf protein_structure by baaden on 2005-07-31 18:12:29 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Covariance analysis of RNA recognition motifs identifies functionally linked amino acids.
    J Mol Biol, Vol. 310, No. 4. (20 July 2001), pp. 793-800.
    by S Crowder, J Holton, T Alber
    posted to bioinf bioinf_methods exp_data by baaden on 2006-06-01 17:42:37 as **
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