Tag bioinformatic [194 articles] Export

Recent papers classified by the tag bioinformatic.

	Seven Variations of an Alignment Workflow - An Illustration of Agile Process Design and Management in Bio-jETI [My Copy] Bioinformatics Research and Applications (2008), pp. 445-456. by Anna-Lena Lamprecht, Tiziana Margaria, Bernhard Steffen posted to jabc bioinformatic bio-jeti by ralf_nagel on 2009-11-04 13:16:50 as along with 3 people natstreet druvus dullhunk
	Bio-jETI: a framework for semantics-based service composition. [My Copy] BMC bioinformatics, Vol. 10 Suppl 10, No. Suppl 10. (2009), S8. by Anna-Lena L. Lamprecht, Tiziana Margaria, Bernhard Steffen posted to jabc bioinformatic bio-jeti by ralf_nagel on 2009-11-04 13:15:38 as along with 2 people yas druvus
	GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. [My Copy] BMC bioinformatics, Vol. 9 Suppl 4 (2008) by A. L. Lamprecht, T. Margaria, B. Steffen, A. Sczyrba, S. Hartmeier, R. Giegerich posted to jabc bioinformatic bio-ejti by ralf_nagel on 2009-11-04 13:13:18 as along with 2 people guhjy dullhunk
	Bio-jETI: a service integration, design, and provisioning platform for orchestrated bioinformatics processes. [My Copy] BMC bioinformatics, Vol. 9 Suppl 4 (2008) by T. Margaria, C. Kubczak, B. Steffen posted to jeti jabc bioinformatic bio-jeti by ralf_nagel on 2009-11-04 13:11:22 as along with 6 people and 1 group gilesvelarde Jodiey lptolik natstreet druvus guhjy RepublicJoew
	Response to Yang et al.: Problems with Bayesian methods of detecting positive selection at the DNA sequence level [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 36. (8 September 2009), pp. E96-E96. by Masafumi Nozawa, Yoshiyuki Suzuki, Masatoshi Nei posted to positive_selection model-based bioinformatic bayesian_inference by ckenaley on 2009-10-21 16:57:32 as along with 3 people and 1 group stajich bpcusack maren Mycology
	PAML 4: phylogenetic analysis by maximum likelihood. [My Copy] Molecular biology and evolution, Vol. 24, No. 8. (1 August 2007), pp. 1586-1591. by Ziheng Yang posted to molecular_phylogenetics model-based maximum_likelihood bioinformatic by ckenaley on 2009-10-21 16:14:54 as along with 13 people and 1 group biomcgary michaelbarton dquest druvus operon akifumi hdopazo BioNica stajich ryanraaum RamuAnandakrishnan CharlesM Ema Mycology
	A tenth crucial question regarding model use in phylogenetics. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 22, No. 10. (October 2007), pp. 509-510. by J. Gatesy posted to phylogenetics model-based bioinformatic by ckenaley on 2009-10-21 04:15:08 as along with 1 person bpcusack
	Generations of sequencing technologies. [My Copy] Genomics, Vol. 93, No. 2. (21 February 2009), pp. 105-111. by Erik Pettersson, Joakim Lundeberg, Afshin Ahmadian posted to bioinformatic resequencage by Ayest on 2009-07-31 13:03:44 as along with 6 people guhjy behindtherabbit daed ImranRaoufMalik druvus jdbowes
	Mining functional information associated with expression arrays. [My Copy] Functional & integrative genomics, Vol. 1, No. 4. (March 2001), pp. 256-268. by C. Blaschke, J. C. Oliveros, A. Valencia posted to analysis bioinformatic data lexical microarray mining by biblio24 on 2009-07-14 13:41:24 as along with 1 person mitko
	WebArray: an online platform for microarray data analysis [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 306. by Xiaoqin Xia, Michael Mcclelland, Yipeng Wang posted to bioinformatic by angelicabtto on 2009-06-14 01:04:42 as along with 4 people natstreet bertelsen daforerog rdiaz
	Pathguide: a pathway resource list. [My Copy] Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006) by G. D. Bader, M. P. Cary, C. Sander posted to bioinformatic database by robert85 on 2009-06-06 11:31:27 as along with 7 people and 1 group behindtherabbit psique fgibson yas balajis blackbart AlexanderPico T_lab
	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to bioinformatic gene protein software by robert85 on 2009-05-24 12:45:15 as along with 73 people and 6 groups rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Bioinformatics: From Genomes to Drugs [My Copy] (25 July 2001) edited by Thomas Lengauer, Raimund Mannhold, Hugo Kubinyi, Hendrik Timmerman posted to bioinformatic docking drug estructural genome protein by csrocha on 2009-04-05 15:51:57 as
	An integrative approach for predicting interactions of protein regions [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i35-41. by Sven-Eric Schelhorn, Thomas Lengauer, Mario Albrecht posted to bioinformatic folding protein by Jporci on 2009-04-03 08:47:06 as along with 4 people phoenixzxl neils zwang kluck
	Learning to extract relations for protein annotation. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007) by J. H. Kim, A. Mitchell, T. K. Attwood, M. Hilario posted to bioinformatic machine-learning protein by robert85 on 2008-12-28 12:44:56 as along with 3 people and 2 groups eesruiz Effie yas ImagCom - Biomedical Text Computing NaCTeM
	Correlation test to assess low-level processing of high-density oligonucleotide microarray data. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by A. Ploner, L. D. Miller, P. Hall, J. Bergh, Y. Pawitan posted to bioinformatic clustering microarray by robert85 on 2008-12-21 19:05:54 as along with 3 people jfr ghattem giovenko
	Zone analysis in biology articles as a basis for information extraction [My Copy] International Journal of Medical Informatics, Vol. 75, No. 6. (17 June 2006), pp. 468-487. by Y. Mizuta, A. Korhonen, T. Mullen, N. Collier posted to zoning text-mining master-thesis classification bioinformatic by robert85 on 2008-12-19 19:55:48 as along with 4 people and 3 groups Effie vlachmore yas helliontroy NaCTeM T_lab biomedical-nlp
	Multi-dimensional classification of biomedical text: Toward automated, practical provision of high-utility text to diverse users [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2086-2093. by Hagit Shatkay, Fengxia Pan, Andrey Rzhetsky, W. John Wilbur posted to bioinformatic text-mining by robert85 on 2008-12-19 19:48:32 as along with 5 people operon Effie yas mitko guhjy
	Tagging gene and protein names in full text articles [My Copy] In Proceedings of the ACL-02 workshop on Natural language processing in the biomedical domain (2002), pp. 9-13. by Lorraine Tanabe, W. John Wilbur posted to bioinformatic text-mining by robert85 on 2008-12-19 19:43:25 as along with 2 people guelke vlachmore
	GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles [My Copy] Comput. Appl. Biosci., Vol. 17, No. suppl_1. (1 June 2001), pp. S74-82. by Carol Friedman, Pauline Kra, Hong Yu, Michael Krauthammer, Andrey Rzhetsky posted to text-mining bioinformatic by robert85 on 2008-12-19 19:33:57 as along with 7 people and 2 groups Cartic farzanehs snuppepuppan irenas yas johnkork dejori dbk-lab T_lab
	Distribution of information in biomedical abstracts and full-text publications. [My Copy] Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2597-2604. by M. J. Schuemie, M. Weeber, B. J. Schijvenaars, et al.E. M. van Mulligen, C. C. van der Eijk, R. Jelier, B. Mons, J. A. Kors posted to bioinformatic text-mining by robert85 on 2008-12-19 19:29:57 as along with 11 people and 6 groups artaban421 cisevol fisherp snuppepuppan irenas korakot yas hpiwowar helliontroy bhaddow Barend BergmanLab Philosophy_of_Information dbk-lab Blog_and_Wiki_Research T_lab biomedical-nlp
	Asymptotically increasing compliance of genomes with Chargaff's second parity rules through inversions and inverted transpositions. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 47. (21 November 2006), pp. 17828-17833. by G. Albrecht-Buehler posted to bioinformatic inversion sequence by Ayest on 2008-12-18 10:04:37 as
	BicAT: a biclustering analysis toolbox [My Copy] Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1282-1283. by Simon Barkow, Stefan Bleuler, Amela Prelic, Philip Zimmermann, Eckart Zitzler posted to bioinformatic clustering framework software by robert85 on 2008-12-17 20:48:05 as along with 4 people and 2 groups tmmurali ilyashl tvdbulck marcius BioinfoCIPF SGU-CIPF
	Support Vector Networks [My Copy] In Machine Learning, Vol. 20 (1995), pp. 273-297. by Corinna Cortes, Vladimir Vapnik posted to bioinformatic clustering machine-learning by robert85 on 2008-12-17 20:35:15 as along with 5 people barmak7282 awg2 xuzhe83 lbustio fsyu2005
	Gene expression profiling spares early breast cancer patients from adjuvant therapy: derived and validated in two population-based cohorts. [My Copy] Breast Cancer Res, Vol. 7, No. 6. (2005) by Y. Pawitan, J. Bjöhle, L. Amler, et al.A. L. Borg, S. Egyhazi, P. Hall, X. Han, L. Holmberg, F. Huang, S. Klaar, E. T. Liu, L. Miller, H. Nordgren, A. Ploner, K. Sandelin, P. M. Shaw, J. Smeds, L. Skoog, S. Wedrén, J. Bergh posted to bioinformatic clustering by robert85 on 2008-12-17 10:50:38 as along with 2 people jfr giovenko
	SIC: A tool to detect short inverted segments in a biological sequence. [My Copy] Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3669-3671. by D. Robelin, H. Richard, B. Prum posted to bioinformatic inversion markov sequence by Ayest on 2008-12-07 17:47:00 as
	seq++: analyzing biological sequences with a range of Markov-related models [My Copy] Bioinformatics, Vol. 21, No. 11. (1 June 2005), pp. 2783-2784. by Vincent Miele, Pierre-Yves Bourguignon, David Robelin, Gregory Nuel, Hugues Richard posted to bioinformatic markov sequence by Ayest on 2008-12-07 17:46:18 as
	Prediction of complete gene structures in human genomic DNA. [My Copy] Journal of molecular biology, Vol. 268, No. 1. (25 April 1997), pp. 78-94. by C. Burge, S. Karlin posted to bioinformatic hmm sequence by Ayest on 2008-11-29 11:11:42 as along with 12 people and 2 groups rshe jmartin49 pcahan1 indigoviolet kaspermunch dullhunk dquest wenhan GustavoLacerda nicholso nklee bandrewfox Bioinformatics EisenLab
	Microbial gene identification using interpolated Markov models [My Copy] Nucl. Acids Res., Vol. 26, No. 2. (15 January 1998), pp. 544-548. by S. L. Salzberg, A. L. Delcher, S. Kasif, O. White posted to bioinformatic hmm sequence by Ayest on 2008-11-29 11:08:50 as along with 7 people and 1 group tfuji ziquje gg bnchakraborty bluto jguinney wenhan MBLAB
	Improved microbial gene identification with GLIMMER. [My Copy] Nucleic acids research, Vol. 27, No. 23. (1 December 1999), pp. 4636-4641. by A. L. Delcher, D. Harmon, S. Kasif, O. White, S. L. Salzberg posted to bioinformatic hmm sequence by Ayest on 2008-11-29 11:06:25 as along with 8 people azazello rneches tfuji nedwards ziquje dquest gelack wenhan
	Pegasys: software for executing and integrating analyses of biological sequences. [My Copy] BMC Bioinformatics, Vol. 5 (19 April 2004) by S. P. Shah, D. Y. He, J. N. Sawkins, et al.J. C. Druce, G. Quon, D. Lett, G. X. Zheng, T. Xu, B. F. Ouellette posted to bioinformatic pipeline by nlapalu on 2008-11-12 16:58:23 as along with 6 people thiagomanel daforerog pansapiens eweaver moborg asddd
	Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator. [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by A. Garcia Castro, S. Thoraval, L. J. Garcia, M. A. Ragan posted to bioinformatic workflow by nlapalu on 2008-11-12 16:55:19 as along with 6 people pekrau daforerog shikin guhjy moborg fisherp
	Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. [My Copy] J Mol Biol, Vol. 300, No. 4. (21 July 2000), pp. 1005-1016. by O. Emanuelsson, H. Nielsen, S. Brunak, G. von Heijne posted to bioinformatic localization subcellular tool by nlapalu on 2008-11-10 16:57:25 as along with 4 people and 2 groups raiyar bpcusack ana mloewer structural_bioinformatics Bioinformatics
	Locating proteins in the cell using TargetP, SignalP and related tools. [My Copy] Nature protocols, Vol. 2, No. 4. (2007), pp. 953-971. by Olof Emanuelsson, Søren Brunak, Gunnar von Heijne, Henrik Nielsen posted to bioinformatic localization subcellular tool by nlapalu on 2008-11-10 16:55:22 as along with 6 people azazello dandaman raiyar guhjy ptrobajo mdstobbe
	Ensembl 2008. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (13 January 2008) by P. Flicek, B. L. Aken, K. Beal, et al.B. Ballester, M. Caccamo, Y. Chen, L. Clarke, G. Coates, F. Cunningham, T. Cutts, T. Down, S. C. Dyer, T. Eyre, S. Fitzgerald, J. Fernandez-Banet, S. Gräf, S. Haider, M. Hammond, R. Holland, K. L. Howe, K. Howe, N. Johnson, A. Jenkinson, A. Kähäri, D. Keefe, F. Kokocinski, E. Kulesha, D. Lawson, I. Longden, K. Megy, P. Meidl, B. Overduin, A. Parker, B. Pritchard, A. Prlic, S. Rice, D. Rios, M. Schuster, I. Sealy, G. Slater, D. Smedley, G. Spudich, S. Trevanion, A. J. Vilella, J. Vogel, S. White, M. Wood, E. Birney, T. Cox, V. Curwen, R. Durbin, X. M. Fernandez-Suarez, J. Herrero, T. J. Hubbard, A. Kasprzyk, G. Proctor, J. Smith, A. Ureta-Vidal, S. Searle posted to bioinformatic ensembl by nlapalu on 2008-11-10 13:48:04 as along with 15 people timhubbard thegoose2 ilyashl semin brdwilde raistrick guhjy hpiwowar jandot flexer daed dullhunk skumagai tharris janasont
	Bringing Web 2.0 to bioinformatics [My Copy] Brief Bioinform, Vol. 10, No. 1. (1 January 2009), pp. 1-10. by Zhang Zhang, Kei-Hoi Cheung, Jeffrey P. Townsend posted to bioinformatic web by nlapalu on 2008-11-10 13:34:00 as along with 17 people and 1 group fgibson agbiotec agomez cassj VGreiff nuin reyez jmeppley Gaetan allysonlister guhjy A_Olympia allancho renatomilani paszkows druvus dullhunk logics of knowledge
	A comparison of common programming languages used in bioinformatics [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 82. by Mathieu Fourment, Michael Gillings posted to bioinformatic language programming by nlapalu on 2008-11-07 16:44:37 as along with 18 people and 2 groups reyez antonkratz daforerog treangen natstreet druvus jamselem dullhunk laughcry ibuch urgi sci91078 renatomilani xili03 phoenixzxl guhjy chad_davis barry Bioinformatics structural_bioinformatics
	Integrating biological databases. [My Copy] Nature reviews. Genetics, Vol. 4, No. 5. (May 2003), pp. 337-345. by Lincoln D. Stein posted to bioinformatic databases by thomaskelder on 2008-10-10 15:40:51 as along with 7 people and 1 group pekrau irenas dullhunk fisherp myui mhucka kynn dbk-lab
	Integrative bioinformatics analysis of transcriptional regulatory programs in breast cancer cells [My Copy] BMC Bioinformatics, Vol. 9 (29 September 2008), 404. by Atsushi Niida, Andrew D. Smith, Seiya Imoto, et al.Shuichi Tsutsumi, Hiroyuki Aburatani, Michael Q. Zhang, Tetsu Akiyama posted to bioinformatic integrate method transcriptional_regulatory by pengchy on 2008-10-05 08:09:18 as along with 5 people Zephyrus Borelli druvus jfr xili03
	Systematic bioinformatic analysis of expression levels of 17,330 human genes across 9,783 samples from 175 types of healthy and pathological tissues. [My Copy] Genome biology, Vol. 9, No. 9. (2008) by Sami Kilpinen, Reija Autio, Kalle Ojala, et al.Kristiina Iljin, Elmar Bucher, Henri Sara, Tommi Pisto, Matti Saarela, Rolf I. Skotheim, Mari Björkman, John-Patrick P. Mpindi, Saija Haapa-Paananen, Paula Vainio, Henrik Edgren, Maija Wolf, Jaakko Astola, Matthias Nees, Sampsa Hautaniemi, Olli Kallioniemi posted to bioinformatic human profiling by pengchy on 2008-10-01 05:23:29 as along with 10 people and 1 group zufar daforerog jfr shikin grahamc imina guhjy klo fpattyn dolchan GeneGo
	Big data: The future of biocuration [My Copy] Nature, Vol. 455, No. 7209. (03 September 2008), pp. 47-50. by Doug Howe, Maria Costanzo, Petra Fey, et al.Takashi Gojobori, Linda Hannick, Winston Hide, David P. Hill, Renate Kania, Mary Schaeffer, Susan St Pierre, Simon Twigger, Owen White, Seung Yon Rhee posted to bioinformatic biology data-mining e-science text-mining by amarois on 2008-09-09 12:59:05 as along with 23 people and 1 group mtaschuk applebyb shankark abhishek_tiwari kshameer barriot eesruiz daforerog allysonlister guhjy jfr lindenb natstreet christoph_steinbeck thomaskelder druvus vobios hpiwowar Zephyrus psique fgibson dullhunk neils Roswell Cancer Crosstalk
	WikiPathways: Pathway Editing for the People [My Copy] PLoS Biol, Vol. 6, No. 7. (22 July 2008), e184. by Alexander R. Pico, Thomas Kelder, Martijn P. van Iersel, Kristina Hanspers, Bruce R. Conklin, Chris Evelo posted to academic bioinformatic biology openscience wiki by amarois on 2008-08-25 08:35:11 as along with 23 people and 2 groups irenas neilswainston abhishek_tiwari sinhaa rolawren daforerog PaoloRomano thegoose2 fisherp fgibson guhjy psique ptrobajo cerami AlexanderPico thomaskelder iBartomeus renatomilani ajaymalik jarredmccaffrey laurianw dullhunk tharris ConklinLab behavior_flexibility
	The war of the whorls: genetic interactions controlling flower development. [My Copy] Nature, Vol. 353, No. 6339. (5 September 1991), pp. 31-37. by E. S. Coen, E. M. Meyerowitz posted to abc bioinformatic diplomarbeit by moborg on 2008-05-05 17:18:44 as
	Collection-Oriented Scientific Workflows for Integrating and Analyzing Biological Data [My Copy] Data Integration in the Life Sciences (2006), pp. 248-263. by Timothy Mcphillips, Shawn Bowers, Bertram Ludäscher posted to bioinformatic diplomarbeit kepler wfms by moborg on 2008-04-22 12:49:26 as
	The Gene Ontology Annotation (GOA) project: implementation of GO in SWISS-PROT, TrEMBL, and InterPro. [My Copy] Genome Res, Vol. 13, No. 4. (April 2003), pp. 662-672. by E. Camon, M. Magrane, D. Barrell, et al.D. Binns, W. Fleischmann, P. Kersey, N. Mulder, T. Oinn, J. Maslen, A. Cox, R. Apweiler posted to bioinformatic diplomarbeit standard by moborg on 2008-04-21 15:24:21 as along with 2 people CitoJam alanrw
	The Molecular Biology Database Collection: 2008 update. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D2-4. by Michael Y. Galperin posted to bioinformatic diplomarbeit by moborg on 2008-04-21 14:17:18 as along with 10 people and 1 group carelcad lmichan junehlee fgibson frohike dullhunk jmrivort higueruelo ramensky AlexanderPico G-quadruplex
	DIALIGN-T: An improved algorithm for segment-based multiple sequence alignment [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005), 66. by Amarendran Subramanian, Jan W. Menkhoff, Michael Kaufmann, Burkhard Morgenstern posted to bioinformatic diplomarbeit by moborg on 2008-04-18 19:24:06 as along with 3 people walshtp BioNica treangen
	LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources. [My Copy] Bioinformatics, Vol. 21, No. 12. (15 June 2005), pp. 2814-2820. by R. Karchin, M. Diekhans, L. Kelly, et al.D. J. Thomas, U. Pieper, N. Eswar, D. Haussler, A. Sali posted to bioinformatic diplomarbeit standard by moborg on 2008-04-06 15:34:27 as along with 2 people happy_manatee Run7
	BNDB - The Biochemical Network Database [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Jan Kuentzer, Christina Backes, Torsten Blum, et al.Andreas Gerasch, Michael Kaufmann, Oliver Kohlbacher, Hans P. Lenhof posted to bioinformatic db dbcollection by moborg on 2008-03-18 15:08:04 as along with 5 people and 1 group tonamswish guhjy niallhaslam julesyoo mircea NCCT Lab Reading Group
	Orchestrierung datenintensiver Prozesse [My Copy] (30 April 2007) by Maik Thiele, Dirk Habich posted to bioinformatic bpel diplomarbeit webservices by moborg on 2008-03-18 09:20:34 as

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