Tag bioinformatics-database [29 articles] Export Sort

Recent papers classified by the tag bioinformatics-database.

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	The Pfam protein families database [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_1. (1 January 2004), pp. D138-141. by Alex Bateman, Lachlan Coin, Richard Durbin, et al.Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy posted to bioinformatics-database bioinformatics by jwm on 2009-09-18 15:20:20 as along with 10 people maria_hauser rohithadassanayake flbarroso cerca LeightonP ziquje chad_davis cjeans wenhan gulkur
	E-MSD: an integrated data resource for bioinformatics. [My Copy] Nucleic acids research, Vol. 33, No. Database issue. (1 January 2005), D262. by S. Velankar, P. McNeil, V. Mittard-Runte, et al.A. Suarez, D. Barrell, R. Apweiler, K. Henrick posted to jbcb bioinformatics-database by bicko on 2009-09-02 18:50:50 as along with 1 person medic0747
	The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007), pp. D291-D297. by Lesley H. Greene, Tony E. Lewis, Sarah Addou, et al.Alison Cuff, Tim Dallman, Mark Dibley, Oliver Redfern, Frances Pearl, Rekha Nambudiry, Adam Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo posted to bioinformatics-database by bicko on 2009-09-02 18:13:47 as along with 2 people and 1 group sillitoe reyez Orengo Group Journal Picks
	The ASTRAL Compendium in 2004. [My Copy] Nucleic acids research, Vol. 32, No. Database issue. (1 January 2004), pp. D189-D192. by John-Marc M. Chandonia, Gary Hon, Nigel S. Walker, et al.Loredana Lo Conte, Patrice Koehl, Michael Levitt, Steven E. Brenner posted to bioinformatics-database by bicko on 2009-09-02 17:54:50 as along with 8 people shacko sgoetz chad_davis sriram_s aengisch rabio siebertm saunders
	Data growth and its impact on the SCOP database: new developments. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (January 2008), pp. D419-D425. by Antonina Andreeva, Dave Howorth, John-Marc M. Chandonia, et al.Steven E. Brenner, Tim J. Hubbard, Cyrus Chothia, Alexey G. Murzin posted to bioinformatics-database by bicko on 2009-09-02 15:24:18 as along with 6 people mittinatten timhubbard yuslinaz druvus chad_davis reyez
	404 not found: the stability and persistence of URLs published in MEDLINE [My Copy] Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 668-672. by Jonathan D. Wren posted to bioinformatics-database url-decay by bicko on 2009-03-15 18:08:11 as along with 5 people and 1 group thomaskelder hubcite yas dullhunk hpiwowar T_lab
	The Universal Protein Resource (UniProt) 2009. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D169-174. by Uniprot-Consortium posted to bioinformatics-database by bicko on 2009-03-15 13:33:26 as along with 12 people saunders barmak7282 azazello badi MarcoAlvarez tfuji nedwards niallhaslam gjuggler lptolik coela sjcockell
	CREDO: A Protein–Ligand Interaction Database for Drug Discovery [My Copy] Chemical Biology & Drug Design, Vol. 73, No. 2. (February 2009), pp. 157-167. by Adrian Schreyer, Tom Blundell posted to bioinformatics-database blundell-group by bicko on 2009-03-08 15:20:29 as along with 7 people ubcg08l mijam richardbickerton pansapiens nanonan massivemayhem higueruelo
	PDBsum new things. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D355-359. by R. A. Laskowski posted to bioinformatics-database by bicko on 2009-03-07 17:41:59 as along with 3 people grottenolm ssgong lptolik
	SMART, a simple modular architecture research tool: Identification of signaling domains [My Copy] Proceedings of the National Academy of Sciences, Vol. 95, No. 11. (26 May 1998), pp. 5857-5864. by Jorg Schultz, Frank Milpetz, Peer Bork, Chris P. Ponting posted to bioinformatics-database by bicko on 2009-03-04 22:38:13 as along with 3 people hplatero Evangelia jteyra
	PROSITE: a dictionary of sites and patterns in proteins. [My Copy] Nucleic acids research, Vol. 19 Suppl (25 April 1991), pp. 2241-2245. by A. Bairoch posted to bioinformatics-database by bicko on 2009-03-04 22:28:53 as along with 1 person fisherp
	The Pfam protein families database. [My Copy] Nucleic acids research, Vol. 36, No. Database issue. (11 January 2008), pp. D281-288. by Robert D. Finn, John Tate, Jaina Mistry, et al.Penny C. Coggill, Stephen John J. Sammut, Hans-Rudolf R. Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. Sonnhammer, Alex Bateman posted to bioinformatics-database by bicko on 2009-03-04 22:25:53 as along with 13 people sjcockell badi MarcoAlvarez calderonv katholt urgi guhjy idoerg BioNica paszkows niallhaslam gjuggler coela
	The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007), pp. D301-D303. by H. Berman, K. Henrick, H. Nakamura, J. L. Markley posted to bioinformatics-database by bicko on 2009-02-25 16:06:57 as along with 2 people mgomes reyez
	URL decay in MEDLINE--a 4-year follow-up study [My Copy] Bioinformatics, Vol. 24, No. 11. (1 April 2008), pp. 1381-1385. by J. D. Wren posted to bioinformatics-database thesis url-decay by bicko on 2009-02-17 15:44:20 as along with 8 people artaban421 dullhunk dgroth Gaetan wisdom_love hpiwowar lmichan fgibson
	Alignment and searching for common protein folds using a data bank of structural templates. [My Copy] J Mol Biol, Vol. 231, No. 3. (5 June 1993), pp. 735-752. by M. S. Johnson, J. P. Overington, T. L. Blundell posted to bioinformatics-database blundell-group by bicko on 2008-10-10 21:40:21 as along with 2 people viktor21614 medic0747
	JOY: protein sequence-structure representation and analysis [My Copy] Bioinformatics, Vol. 14, No. 7. (1 August 1998), pp. 617-623. by K. Mizuguchi, C. M. Deane, T. L. Blundell, M. S. Johnson, J. P. Overington posted to bioinformatics-database blundell-group by bicko on 2008-10-10 21:38:48 as along with 8 people mgomes chrn laurabailey massivemayhem medic0747 cdeane sebk TOchi
	HOMSTRAD: a database of protein structure alignments for homologous families. [My Copy] Protein Sci, Vol. 7, No. 11. (November 1998), pp. 2469-2471. by K. Mizuguchi, C. M. Deane, T. L. Blundell, J. P. Overington posted to bioinformatics-database blundell-group structure-comparison by bicko on 2008-10-10 21:38:10 as along with 8 people semin viktor21614 chrn massivemayhem medic0747 cdeane sebk newton1234
	Remediation of the protein data bank archive [My Copy] Nucleic Acids Research, Vol. 36, No. Database. (23 December 2007), pp. D426-D433. by K. Henrick, Z. Feng, W. F. Bluhm, et al.D. Dimitropoulos, J. F. Doreleijers, S. Dutta, J. L. Flippen-Anderson, J. Ionides, C. Kamada, E. Krissinel, C. L. Lawson, J. L. Markley, H. Nakamura, R. Newman, Y. Shimizu, J. Swaminathan, S. Velankar, J. Ory, E. L. Ulrich, W. Vranken, J. Westbrook, R. Yamashita, H. Yang, J. Young, M. Yousufuddin, H. M. Berman posted to bioinformatics-database by bicko on 2008-09-03 11:17:53 as along with 2 people viktor21614 hpiwowar
	Overhauling the PDB. [My Copy] Nature biotechnology, Vol. 25, No. 4. (April 2007), pp. 437-442. by Amanda C. Schierz, Larisa N. Soldatova, Ross D. King posted to bioinformatics-database by bicko on 2008-09-03 11:12:42 as along with 4 people daforerog dullhunk jerome viktor21614
	Growth of novel protein structural data [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 104, No. 9. (27 February 2007), pp. 3183-3188. by Michael Levitt posted to bioinformatics-database by bicko on 2008-08-27 18:37:03 as along with 6 people dgront carlosjavierna reyez viktor21614 aalibes tjimenez
	The Cambridge Structural Database: a quarter of a million crystal structures and rising. [My Copy] Acta crystallographica. Section B, Structural science, Vol. 58, No. Pt 3 Pt 1. (June 2002), pp. 380-388. by F. H. Allen posted to bioinformatics-database by bicko on 2008-08-27 17:36:17 as
	T1DBase: integration and presentation of complex data for type 1 diabetes research. [My Copy] Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007) by E. M. Hulbert, L. J. Smink, E. C. Adlem, et al.J. E. Allen, D. B. Burdick, O. S. Burren, C. C. Cavnor, G. E. Dolman, D. Flamez, K. F. Friery, B. C. Healy, S. A. Killcoyne, B. Kutlu, H. Schuilenburg, N. M. Walker, J. Mychaleckyj, D. L. Eizirik, L. S. Wicker, J. A. Todd, N. Goodman posted to snps bioinformatics-database by bicko on 2007-01-15 11:19:19 as along with 1 person shikin
	Mapping PDB chains to UniProtKB entries. [My Copy] Bioinformatics, Vol. 21, No. 23. (1 December 2005), pp. 4297-4301. by A. C. Martin posted to bioinformatics-database pdb-sequence by bicko on 2007-01-09 12:56:20 as along with 3 people grahamc lpfernandes saunders
	Ensembl 2006. [My Copy] Nucleic acids research, Vol. 34, No. Database issue. (1 January 2006), pp. D556-D561. by E. Birney posted to 1st-yr-report bioinformatics-database by bicko on 2006-06-30 02:31:56 as along with 10 people schwalb timhubbard aalibes miguel chad_davis dullhunk duartemolha fisherp frohike flexer
	SCOP: a Structural Classification of Proteins database. [My Copy] Nucleic acids research, Vol. 27, No. 1. (1 January 1999), pp. 254-256. by T. J. Hubbard, B. Ailey, S. E. Brenner, A. G. Murzin, C. Chothia posted to 1st-yr-report bioinformatics-database by bicko on 2006-06-30 02:17:57 as along with 3 people maria_hauser timhubbard cjeans
	PISCES: recent improvements to a PDB sequence culling server. [My Copy] Nucleic Acids Res, Vol. 33, No. Web Server issue. (1 July 2005) by G. Wang, R. L. Dunbrack posted to 1st-yr-report bioinformatics-database pdb-sequence by bicko on 2006-06-30 02:10:14 as along with 5 people newton1234 kaarsinogen blackbart chgjb chad_davis
	The Protein Data Bank [My Copy] Nucl. Acids Res., Vol. 28, No. 1. (1 January 2000), pp. 235-242. by Helen M. Berman, John Westbrook, Zukang Feng, et al.Gary Gilliland, T. N. Bhat, Helge Weissig, Ilya N. Shindyalov, Philip E. Bourne posted to 1st-yr-report bioinformatics-database by bicko on 2006-06-30 02:07:11 as along with 47 people and 5 groups loison ubcg08l trishul krapnik barmak7282 viktor21614 badi ucbcjbm TLVincent maria_hauser Martin8223 tomjad Diego_Prada flbarroso Taguan oceanwind dsmueller fisherp semin MarcoAlvarez kumar_physics LamBras RamuAnandakrishnan nlapalu reyez nigham lillekatt thaliana dimka kuhn jwm vavi itmeson dgront caporaso condon aengisch debatebob massivemayhem gisle girschick selrac tji higueruelo boris_aguilar sebk timg References for 3DSim paper Radiation_Damage Stressosome biomedical-nlp beta
	HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database [My Copy] Nucleic Acids Research, Vol. 32, No. 90001. (1 January 2004), pp. 203D-207. by L. A. Stebbings posted to jbcb blundell-group bioinformatics-database by bicko on 2006-06-30 01:55:57 as
	PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. [My Copy] Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005) by R. A. Laskowski, V. V. Chistyakov, J. M. Thornton posted to 1st-yr-report bioinformatics-database by bicko on 2006-06-27 10:56:12 as along with 1 group References for 3DSim paper

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