Tag biological_networks [102 articles] Export

Recent papers classified by the tag biological_networks.

	Using biological networks to search for interacting loci in genome-wide association studies [My Copy] European Journal of Human Genetics, Vol. 17, No. 10. (11 March 2009), pp. 1231-1240. by Mathieu Emily, Thomas Mailund, Jotun Hein, Leif Schauser, Mikkel H. Schierup posted to snps epistatic_effects epistasis biological_networks by Geknitics on 2009-10-22 16:24:58 as along with 7 people and 1 group kimorley jo_davies daforerog psique guhjy frohike jdbowes Journal picks
	How to visually interpret biological data using networks [My Copy] Nature Biotechnology, Vol. 27, No. 10. (01 October 2009), pp. 921-924. by Daniele Merico, David Gfeller, Gary D. Bader posted to visualization biological_networks biological_data analysis_patterns by mhamidi on 2009-10-20 22:37:08 as along with 11 people and 1 group qayub OliverHarriman AJCann grahamc rdiaz megraw tmmurali fgibson gotgenes druvus dullhunk Journal picks
	Cross species analysis of microarray expression data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted to species_specific_nw comparative_genomics biological_networks by roys on 2009-10-16 22:39:39 as along with 11 people and 1 group daveGerrard ptrobajo guhjy yaredo shikin dswan renatomilani rdiaz thomaskelder natstreet druvus Bioinformatics
	The structure and function of complex networks [My Copy] (25 Mar 2003) by M. E. J. Newman posted to social_network networks graph_models empirical_studies distributions complex_networks biological_networks by dcurtis on 2009-10-15 21:02:30 as
	SGN Sim, a Stochastic Genetic Networks Simulator [My Copy] Bioinformatics, Vol. 23, No. 6. (15 March 2007), pp. 777-779. by Andre S. Ribeiro, Jason Lloyd-Price posted to genetic_networks biological_networks by meanerelk on 2009-09-25 20:54:38 as along with 3 people Borelli heliopais HeyGey
	Generating realistic in silico gene networks for performance assessment of reverse engineering methods. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 2. (February 2009), pp. 229-239. by Daniel Marbach, Thomas Schaffter, Claudio Mattiussi, Dario Floreano posted to network_structures gene_networks biological_networks by meanerelk on 2009-09-25 20:49:09 as along with 2 people roys diging_data
	Integration of biological networks and gene expression data using Cytoscape. [My Copy] Nature protocols, Vol. 2, No. 10. (27 September 2007), pp. 2366-2382. by Melissa S. Cline, Michael Smoot, Ethan Cerami, et al.Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross, Kristina Hanspers, Ruth Isserlin, Ryan Kelley, Sarah Killcoyne, Samad Lotia, Steven Maere, John Morris, Keiichiro Ono, Vuk Pavlovic, Alexander R. Pico, Aditya Vailaya, Peng-Liang L. Wang, Annette Adler, Bruce R. Conklin, Leroy Hood, Martin Kuiper, Chris Sander, Ilya Schmulevich, Benno Schwikowski, Guy J. Warner, Trey Ideker, Gary D. Bader posted to interaction_networks interaction_network cytoscape biological_networks bioinformatics by badi on 2009-09-25 05:51:48 as along with 19 people and 1 group daveGerrard greg ptrobajo tonamswish daforerog bertelsen Cortel cswinburne giovenko isimpson emmackinnon yaredo Stew guhjy jfr shikin shung thomaskelder AlexanderPico GeneGo
	Mining coherent dense subgraphs across massive biological networks for functional discovery [My Copy] Bioinformatics, Vol. 21, No. suppl_1. (1 June 2005), pp. i213-221. by Haiyan Hu, Xifeng Yan, Yu Huang, Jiawei Han, Xianghong J. Zhou posted to subgraph graph biological_networks by Borelli on 2009-09-09 12:43:52 as along with 3 people and 2 groups xiaolizi lfriedl dragonrez iDataOLD kdl
	The Systems Biology Graphical Notation [My Copy] Nature Biotechnology, Vol. 27, No. 8. (07 August 2009), pp. 735-741. by Nicolas L. Novere, Michael Hucka, Huaiyu Mi, et al.Stuart Moodie, Falk Schreiber, Anatoly Sorokin, Emek Demir, Katja Wegner, Mirit I. Aladjem, Sarala M. Wimalaratne, Frank T. Bergman, Ralph Gauges, Peter Ghazal, Hideya Kawaji, Lu Li, Yukiko Matsuoka, Alice Villeger, Sarah E. Boyd, Laurence Calzone, Melanie Courtot, Ugur Dogrusoz, Tom C. Freeman, Akira Funahashi, Samik Ghosh, Akiya Jouraku, Sohyoung Kim, Fedor Kolpakov, Augustin Luna, Sven Sahle, Esther Schmidt, Steven Watterson, Guanming Wu, Igor Goryanin, Douglas B. Kell, Chris Sander, Herbert Sauro, Jacky L. Snoep, Kurt Kohn, Hiroaki Kitano posted to systems_biology network_representation biological_networks by roys on 2009-08-16 17:28:28 as along with 37 people and 3 groups greg tonamswish pablocarb josepe abc623 daforerog abhishek_tiwari robertrentzsch ngehlenborg pekrau thegoose bertelsen fgibson Borelli thomaskelder pmendes dullhunk polivares chasmand brianb torfinnnome guhjy Zephyrus lenov reyez allysonlister apocapoc renatomilani VGreiff druvus sjcockell jandot megraw leliavski frohike fpattyn jhyang Orengo Group Journal Picks Journal picks Neuroblastoma
	Biological pathways as communicating computer systems. [My Copy] Journal of cell science, Vol. 122, No. Pt 16. (15 August 2009), pp. 2793-2800. by Marta Z. Kwiatkowska, John K. Heath posted to biological_networks biological_computation by grahamc on 2009-08-16 03:14:44 as along with 4 people and 1 group daforerog agonzale cmura barry McCammon
	Spontaneous evolution of modularity and network motifs [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 39. (27 September 2005), pp. 13773-13778. by Nadav Kashtan, Uri Alon posted to biological_networks modularity by roys on 2009-08-11 05:36:18 as along with 21 people and 7 groups rsantana vtraag anphony ocs saket mcphee marimo monod Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina carlk Modularity in evolutionary algorithms MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn
	Co-evolutionary networks of genes and cellular processes across fungal species [My Copy] Genome Biology, Vol. 10, No. 5. (2009), R48. by Tamir Tuller, Martin Kupiec, Eytan Ruppin posted to biological_networks evolution fungi by roys on 2009-06-12 17:59:01 as along with 5 people kiekyon inesdesantiago grahamc dokky michaelbarton
	Inferring cellular networks - a review [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 6. (2007), S5. by Florian Markowetz, Rainer Spang posted to biological_networks causality gene_expression network_inference by roys on 2009-05-24 18:02:13 as along with 14 people antonkratz daforerog chica ocs cswinburne ndiaz edwardmorrissey guhjy tmmurali shigepong dejori heliopais bertelsen czeller
	Evolutionary cores of domain co-occurrence networks. [My Copy] BMC Evol Biol, Vol. 5, No. 1. (2005) by S. Wuchty, E. Almaas posted to biological_networks k-core networks by davidecellai on 2009-05-11 12:36:18 as along with 5 people agustinarce tny neils stajich phoenixzxl
	Discovery of biological networks from diverse functional genomic data. [My Copy] Genome Biol, Vol. 6, No. 13. (2005) by C. L. Myers, D. Robson, A. Wible, et al.M. A. Hibbs, C. Chiriac, C. L. Theesfeld, K. Dolinski, O. G. Troyanskaya posted to bayesian_networks biological_networks data_integration functional_networks yeast by roys on 2009-04-23 05:02:15 as along with 5 people dragonrez cswinburne grahamc carlk AbnerCYH
	A genomewide functional network for the laboratory mouse. [My Copy] PLoS computational biology, Vol. 4, No. 9. (2008), e1000165. by Y. Guan, C. L. Myers, R. Lu, I. R. Lemischka, C. J. Bult, O. G. Troyanskaya posted to bayesian_networks biological_networks data_integration functional_networks gene_expression_nw mouse by roys on 2009-04-23 04:59:14 as along with 9 people dansullivanblk biomcgary cswinburne zwang pengchy ptrobajo guhjy grahamc tmmurali
	Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity [My Copy] Nature Genetics, Vol. 41, No. 3. (22 February 2009), pp. 316-323. by Esti Yeger-Lotem, Laura Riva, Linhui J. Su, et al.Aaron D. Gitler, Anil G. Cashikar, Oliver D. King, Pavan K. Auluck, Melissa L. Geddie, Julie S. Valastyan, David R. Karger, Susan Lindquist, Ernest Fraenkel posted to biological_networks causality flow_networks qtl by roys on 2009-03-22 19:45:34 as along with 5 people tmmurali stasaki absterga provero psique
	Benchmarking Regulatory Network Reconstruction with GRENDEL [My Copy] Bioinformatics (2 February 2009), btp068. by Brian C. Haynes, Michael R. Brent posted to biological_networks network_inference nwsim regulatory_nw by roys on 2009-03-12 18:44:40 as along with 7 people dolchan tmarscha tonamswish TRHvidsten APRegier rdiaz imina
	Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests a Limited Role of Gene Duplication and Divergence [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (28 November 2008), e1000232. by Wan K. Kim, Edward M. Marcotte posted to biological_networks divergence evolution gene_duplication yeast by wangbo on 2009-03-05 16:20:37 as along with 7 people dakelley biomcgary cabbagesofdoom chad_davis grahamc bpcusack tmmurali
	Evolution of Complex Modular Biological Networks [My Copy] PLoS Comput Biol, Vol. 4, No. 2. (8 February 2008), e23. by Arend Hintze, Christoph Adami posted to biological_networks evolution by wangbo on 2009-03-04 17:56:35 as along with 7 people rouault saket grahamc laughcry rcaze alhufton phoenixzxl
	Evolution, Interactions, and Biological Networks [My Copy] PLoS Biology, Vol. 5, No. 1. (1 January 2007), e11. by Joshua S. Weitz, Philip N. Benfey, Ned S. Wingreen posted to biological_networks evolution by wangbo on 2009-03-04 17:35:36 as along with 17 people and 1 group Borelli anphony eldan aalibes cmmorel balajis wnpx cerkut jhatrimatri josepe timothee srfairclough hmk bootsy Ema bpcusack skumagai contact-id
	Reverse engineering the genotype\|[ndash]\|phenotype map with natural genetic variation [My Copy] Nature, Vol. 456, No. 7223. (10 December 2008), pp. 738-744. by Matthew V. Rockman posted to biological_networks causality by roys on 2009-03-02 02:54:49 as along with 15 people and 1 group gdb carlk Keywan TRHvidsten jfr Zephyrus mjoach sg45653 natstreet druvus sriesenfeld lp2 pkonings stringertheory djkt Roswell Cancer Crosstalk
	Harnessing naturally randomized transcription to infer regulatory relationships among genes [My Copy] Genome Biology, Vol. 8 (11 October 2007), R219. by Lin S. Chen, Frank Emmert-Streib, John D. Storey posted to biological_networks causality tfnets by roys on 2009-03-01 18:28:05 as along with 1 person caseybrown
	Global networks of functional coupling in eukaryotes from comprehensive data integration [My Copy] Genome Research, Vol. 19, No. 6. (25 June 2009), pp. 1107-1116. by Andrey Alexeyenko, Erik L. L. Sonnhammer posted to biological_networks data_integration by roys on 2009-03-01 18:17:58 as along with 7 people and 1 group phoenixzxl ptrobajo kshameer rdiaz guhjy provero grahamc ParkinsonLab_at_MaRS
	SPINE: a framework for signaling-regulatory pathway inference from cause-effect experiments. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007) by Oved Ourfali, Tomer Shlomi, Trey Ideker, Eytan Ruppin, Roded Sharan posted to biological_networks causality signaling_nw by roys on 2009-02-28 19:46:21 as along with 2 people ptrobajo guhjy
	Evolution of network structure by temporal learning [My Copy] Physica A: Statistical Mechanics and its Applications (21 January 2009) by J. Jost, K. Kolwankar posted to biological_networks dynamical_networks network_growth networks by davidecellai on 2009-01-23 13:51:19 as
	The human disease network [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 21. (22 May 2007), pp. 8685-8690. by Kwang-Il Goh, Michael E. Cusick, David Valle, Barton Childs, Marc Vidal, Albert-LÃ¡szlÃ³ BarabÃ¡si posted to biological_networks diseases human networks by roys on 2009-01-06 01:53:57 as along with 39 people and 9 groups robfsouza bertelsen smichan biomcgary pawelsobko CurAbility Scis0000002 qluo cbforrest daforerog nedwards Dulcinea saket kaarsinogen Yanno guhjy aalibes cannin kuhn jfr yas balicea neveaire bundschu raiyar grahamc joepickrell leSyl henning dejori xingxu winterschlaefer naegele shoshin shikin nolodie mingzhi carlk yaredo Network Analysis of Genes Regulated in Renal Diseases Biostatistics Computational-Genomics Bioinformatics Neuroscience steinmetzlab ic4 generif_paper GomezLab
	Prediction of protein function using protein-protein interaction data [My Copy] Journal of Computational Biology, Vol. 10 (2003), pp. 947-960. by Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun posted to biological_networks networks protein_interaction proteins by davidecellai on 2008-12-15 09:52:11 as
	Lethality and centrality in protein networks [My Copy] Nature, Vol. 411, No. 6833. (03 May 2001), pp. 41-42. by H. Jeong, S. P. Mason, A. L. Barabási, Z. N. Oltvai posted to biological_networks centrality networks proteins protein_interaction by davidecellai on 2008-12-11 10:48:29 as along with 24 people and 2 groups pablocarb feshbach mgomes lawraga deanmalmgren jmenche muraken diamantis dylanwalker jiny kuhn cmmorel nickluscombe gurkanbebek jeremymiller timflutre ruvido gcalda grahamc lpfernandes Evangelia iris_2001 cerca ethkim EBI-regulation GeschwindLab
	Global protein function prediction from protein-protein interaction networks. [My Copy] Nat Biotechnol, Vol. 21, No. 6. (June 2003), pp. 697-700. by A. Vázquez, A. Flammini, A. Maritan, A. Vespignani posted to biological_networks networks proteins protein_interaction by davidecellai on 2008-12-11 10:43:12 as along with 10 people chica aprildh31 jiny shivaram eweaver gcalda grahamc iris_2001 maralena carlk
	Quantifying local structure effects in network dynamics [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 78, No. 5. (2008) by Andre S. Ribeiro, Jason L. Price, Juha Kesseli, Antti Häkkinen, Olli Y. Harja posted to biological_networks boolean_networks clustering mutual_information networks dynamical_networks by davidecellai on 2008-11-28 16:59:24 as
	Communicability betweenness in complex networks [My Copy] Physica A: Statistical Mechanics and its Applications (19 November 2008) by E. Estrada, D. Higham, N. Hatano posted to betweenness biological_networks networks protein_interaction proteins by davidecellai on 2008-11-28 10:52:38 as along with 1 person vtraag
	Predicting co-complexed protein pairs from heterogeneous data. [My Copy] PLoS computational biology, Vol. 4, No. 4. (April 2008) by J. Qiu, W. S. Noble posted to biological_networks networks protein_nw supervised_learning by roys on 2008-11-25 06:08:26 as along with 5 people guhjy bootsy carlk mingzhi penpen926
	Why do hubs tend to be essential in protein networks? [My Copy] PLoS genetics, Vol. 2, No. 6. (2 June 2006), e88. by Xionglei He, Jianzhi Zhang posted to protein_interaction proteins biological_networks hubs networks by davidecellai on 2008-11-13 17:03:06 as along with 5 people and 1 group ccots cmm dquest entropy mmt FAB-lab
	Identification of functional modules using network topology and high-throughput data. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007), 8. by Igor Ulitsky, Ron Shamir posted to biological_networks condition_specific_nw context_sensitive network_motifs by roys on 2008-11-12 05:15:55 as along with 18 people greg akshayk ptrobajo yaredo isimpson qluo aheilbut zufar frohike tmmurali dragonrez jfr wnpx Ao_Li2007 lyndon bertelsen ellakat carlk
	Functional coherence in domain interaction networks [My Copy] Bioinformatics, Vol. 24, No. 16. (15 August 2008), pp. i28-34. by Jayesh Pandey, Mehmet Koyuturk, Shankar Subramaniam, Ananth Grama posted to protein_interaction proteins biological_networks networks by davidecellai on 2008-11-07 11:48:40 as along with 3 people mgomes phoenixzxl zwang
	Modularity and Dynamics of Cellular Networks [My Copy] PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e174. by Yuan Qi, Hui Ge posted to biological_networks education by giovenko on 2008-11-02 12:20:52 as along with 8 people daforerog druvus joshuashen grahamc massivemayhem fishtank ccr roys
	Deciphering protein-protein interactions. Part II. Computational methods to predict protein and domain interaction partners. [My Copy] PLoS computational biology, Vol. 3, No. 4. (27 April 2007), e43. by Benjamin A. Shoemaker, Anna R. Panchenko posted to biological_networks education protein_protein_interaction by giovenko on 2008-11-02 12:19:29 as along with 23 people timg cerca jperkins chica kiekyon kshameer zdai Robinder Yanno guhjy aalibes bicko jfr chad_davis cjeans iris_2001 zwang lpfernandes groepl carlk Evangelia higueruelo phoenixzxl
	Deciphering protein-protein interactions. Part I. Experimental techniques and databases. [My Copy] PLoS computational biology, Vol. 3, No. 3. (30 March 2007), e42. by Benjamin A. Shoemaker, Anna R. Panchenko posted to biological_networks education protein_protein_interaction by giovenko on 2008-11-02 12:19:01 as along with 11 people chica flbarroso kiekyon semin Yanno IbnBio zwang Evangelia carlk higueruelo ethkim
	A Primer on Learning in Bayesian Networks for Computational Biology [My Copy] PLoS Comput Biol, Vol. 3, No. 8. (31 August 2007), e129. by Chris J. Needham, James R. Bradford, Andrew J. Bulpitt, David R. Westhead posted to biological_networks education machine_learning by giovenko on 2008-11-02 12:12:58 as along with 17 people and 1 group colm abhishek_tiwari kshameer tonamswish Borelli toerst aviad_work druvus jo_davies balicea macle GeeSharpMinor firoozye sobolevnrm bmaust kmdaily schelhorn baker-group
	From Pathways Databases to Network Models of Switching Behavior [My Copy] PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e152. by Baltazar D. Aguda, Andrew B. Goryachev posted to biological_networks education by giovenko on 2008-11-02 12:10:47 as along with 5 people hardi bayesian julius zwang Ema
	Getting connected: analysis and principles of biological networks [My Copy] Genes & Development, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024. by Xiaowei Zhu, Mark Gerstein, Michael Snyder posted to biological_networks networks by davidecellai on 2008-10-30 19:17:30 as along with 16 people abhishek_tiwari arsyed nzm jaimie ptrobajo pengchy jfr balajis grahamc fishtank nedwards naegele Evangelia kristen carlk renatomilani
	Specificity and stability in topology of protein networks. [My Copy] Science (New York, N.Y.), Vol. 296, No. 5569. (3 May 2002), pp. 910-913. by Sergei Maslov, Kim Sneppen posted to protein_interaction proteins biological_networks gene_regulatory_network networks by davidecellai on 2008-10-30 15:19:44 as along with 13 people and 1 group nzm jmenche ocs tomhebbron phoenixzxl muraken camster timflutre gcalda grahamc iris_2001 wjh122122 dylanwalker dbk-lab
	Evolutionary and Physiological Importance of Hub Proteins [My Copy] PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e88. by Nizar N. Batada, Laurence D. Hurst, Mike Tyers posted to protein_interaction proteins biological_networks hubs networks yeast by davidecellai on 2008-10-30 14:45:02 as along with 7 people diamantis phoenixzxl aswin IbnBio lpfernandes Evangelia Ema
	Evolution of the yeast protein interaction network [My Copy] Proceedings of the National Academy of Sciences, Vol. 100, No. 22. (28 October 2003), pp. 12820-12824. by Hong Qin, Henry H. Lu, Wei B. Wu, Wen-Hsiung Li posted to protein_interaction proteins biological_networks networks yeast by davidecellai on 2008-10-30 13:20:51 as along with 2 people diamantis friendpine
	What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? [My Copy] Genome biology, Vol. 7, No. 6. (16 June 2006), R45. by Diana Ekman, Sara Light, Asa K. Björklund, Arne Elofsson posted to protein_interaction proteins biological_networks hubs networks yeast dynamical_networks by davidecellai on 2008-10-30 11:09:25 as along with 5 people and 1 group aalibes indigoviolet aswin lpfernandes marti EisenLab
	Exploring biological networks with Cytoscape software. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 8 (September 2008) by N. Yeung, M. S. Cline, A. Kuchinsky, M. E. Smoot, G. D. Bader posted to biological_networks by giovenko on 2008-10-30 10:49:10 as along with 4 people tonamswish cswinburne reyez sjcockell
	Cytoscape: a software environment for integrated models of biomolecular interaction networks. [My Copy] Genome research, Vol. 13, No. 11. (November 2003), pp. 2498-2504. by Paul Shannon, Andrew Markiel, Owen Ozier, et al.Nitin S. Baliga, Jonathan T. Wang, Daniel Ramage, Nada Amin, Benno Schwikowski, Trey Ideker posted to biological_networks by giovenko on 2008-10-30 10:48:44 as along with 33 people and 3 groups daveGerrard fastjoe23 badi stharward kentz tonamswish janani137 shung schwartzjmc APRegier panghouse robert85 capitall higueruelo shikin daforerog cswinburne thomaskelder nolodie Stew dragonrez balajis tvdbulck frohike carmaus dagmar natstreet jlh64 Evangelia pmendes yggdrasil carlk Borelli dIEMoSIRIS MoSi-Rostock compneur
	Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i282-288. by Wei K. Lim, Kai Wang, Celine Lefebvre, Andrea Califano posted to biological_networks microarray_normalization by giovenko on 2008-10-30 10:46:55 as along with 12 people jperkins jeremymiller lawraga bertelsen frohike huiminC dubhelix pengchy aramesh2 shigepong ghattem heliopais
	ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context. [My Copy] BMC Bioinformatics, Vol. 7 Suppl 1 (2006) by A. A. Margolin, I. Nemenman, K. Basso, et al.C. Wiggins, G. Stolovitzky, R. Dalla Favera, A. Califano posted to biological_networks by giovenko on 2008-10-30 10:44:15 as along with 17 people dolchan tonamswish Neeperando akraemer APRegier verdicchio behindtherabbit kaarsinogen mbehbah1 druvus ptrobajo kentsis tmmurali jfr shigepong natstreet heliopais

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networks	33
protein_interaction	13
proteins	13
network_inference	8
bayesian_networks	7
evolution	7
yeast	7
data_integration	6
causality	5
education	5
dynamical_networks	4
hubs	4
modularity	3
network_motifs	3
robustness	3
systems_biology	3
bioinformatics	2
diseases	2
ecoli	2
functional_networks	2
gene_expression	2
gene_expression_nw	2
graphical_models	2
human	2
interactions	2
optimization	2
proje	2
protein-protein	2
protein_nw	2
protein_protein_interaction	2
protein_signaling	2
regression	2
regulatory_nw	2
scalable_nw_learning	2
signaling_nw	2
small_world	2
analysis_patterns	1
annotation	1
betweenness	1
biological_computation	1
bistability	1
boolean	1
boolean_networks	1
cdp_center	1
centrality	1
clustering	1
communities	1
comparative_genomics	1
condition_specific_nw	1
context_sensitive	1
cytoscape	1
distributions	1
divergence	1
empirical_studies	1
epistasis	1
epistatic_effects	1
flow_networks	1
function_prediction	1
gene_duplication	1
gene_networks	1
gene_regulatory_network	1
genetic_networks	1
graph_models	1
hypothesis	1
interaction_network	1
interaction_networks	1
k-core	1
machine_learning	1
mammals	1
metabolic_nw	1
metabolism	1
microarray_normalization	1
modelling	1
module_nw	1
mouse	1
mutual_information	1
network_representation	1
network_structures	1
network_topology	1
nw_modularity	1
nwsim	1
ontology_similarity	1
petrinet	1
qtl	1
reaction_networks	1
simulation	1
snps	1
social_network	1
social_networks	1
software	1
species_specific_nw	1
structure_learning	1
subgraph	1
supervised_learning	1
synthetic_biology	1
tfnet	1
tfnets	1
tissue_specific_nw	1
tools	1
visualization	1

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