Tag blast [112 articles] Export

Recent papers classified by the tag blast.

	Basic local alignment search tool. [My Copy] Journal of molecular biology, Vol. 215, No. 3. (5 October 1990), pp. 403-410. by S. F. Altschul, W. Gish, W. Miller, E. W. Myers, D. J. Lipman posted to proteomics molecular genomics blast by VGreiff on 2009-11-21 19:01:26 as along with 77 people and 6 groups richter80 krapnik azazello rshe mtaschuk sjcockell niallhaslam djohnson thegoose humburg timhubbard pachorip n00c maria_hauser rpetrenko parnell yylin esyoun APRegier idoerg Neeperando robert85 thegoose2 daforerog mcbla coela alessandroparini bertelsen Blackbeard florisbuijzen laurabailey treangen pwais mmartin tharris dmp camster davidng evaf dragonrez jwm jmeppley Ayest RMGraze ea yas balajis alexg indigoviolet moborg arcticrasta dullhunk dgront caporaso michC myui BioNica CitoJam rabio timflutre lusk cjeans incovoma beatrizfernandez wenhan jtomasch GustavoLacerda sgoetz siebertm ichbins81 jofiel Thaverkamp shung marti ashaytan benwei granujilla C. elegans / WormBase dbk-lab EisenLab T_lab biomedical-nlp Microbial-Ecology
	Combined use of sequence similarity and codon bias for coding region identification. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 1, No. 1. (1994), pp. 39-50. by D. J. States, W. Gish posted to proteomics molecular genomics blast by VGreiff on 2009-11-21 19:00:47 as along with 2 people azazello wenhan
	Genomic Resources of Magnaporthe oryzae (GROMO): A comprehensive and integrated database on rice blast fungus [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 316. by Shalabh Thakur, Sanjay Jha, Subhankar R. Barman, Bharat Chattoo posted to user_interface sequence blast annotation by nlapalu on 2009-10-30 17:04:39 as along with 1 person druvus
	The genome BLASTatlas-a GeneWiz extension for visualization of whole-genome homology [My Copy] Mol. BioSyst., Vol. 4, No. 5. (May 2008), pp. 363-371. by Peter F. Hallin, Tim T. Binnewies, David W. Ussery posted to visualisation homology genome blast by druvus on 2009-10-21 08:54:15 as along with 1 person guhjy
	The BLAST 250-micron selected galaxy population in GOODS-South [My Copy] (19 Oct 2009) by J. S. Dunlop, P. A. R. Ade, J. J. Bock, et al.E. L. Chapin, M. Cirasuolo, K. E. K. Coppin, M. J. Devlin, M. Griffin, T. R. Greve, J. O. Gundersen, M. Halpern, P. C. Hargrave, D. H. Hughes, R. J. Ivison, J. Klein, A. Kovacs, G. Marsden, P. Mauskopf, C. B. Netterfield, L. Olmi, E. Pascale, G. Patanchon, M. Rex, D. Scott, C. Semisch, I. Smail, T. A. Targett, N. Thomas, M. D. P. Truch, C. Tucker, G. S. Tucker, M. P. Viero, F. Walter, J. L. Wardlow, A. Weiss, D. V. Wiebe posted to submm goods fir blast astro-ph by mojin on 2009-10-20 17:21:46 as
	The Closest BLAST Hit Is Often Not the Nearest Neighbor [My Copy] Journal of Molecular Evolution, Vol. 52, No. 6. (24 June 2001), pp. 540-542. by Liisa B. Koski, G. Brian Golding posted to sequence phylogeny phylogenetics methods evolution blast bioinformatics by pansapiens on 2009-09-28 07:18:35 as along with 6 people and 3 groups ana dayjm mycitation indigoviolet AaronDarling cerca structural_bioinformatics Bioinformatics EisenLab
	Identification of homologs in insignificant blast hits by exploiting extrinsic gene properties. [My Copy] BMC bioinformatics, Vol. 8 (21 September 2007), 356. by Jos Boekhorst, Berend Snel posted to homology context blast by ptrobajo on 2009-09-17 10:11:31 as along with 3 people eckart_bindewald julesyoo dandaman
	Human–Mouse Alignments with BLASTZ [My Copy] Genome Research, Vol. 13, No. 1. (1 January 2003), pp. 103-107. by Scott Schwartz, W. James Kent, Arian Smit, et al.Zheng Zhang, Robert Baertsch, Ross C. Hardison, David Haussler, Webb Miller posted to genome blast alignment by gdb on 2009-08-17 11:49:53 as along with 6 people and 1 group daveGerrard druvus operon indigoviolet treangen nedwards EisenLab
	BLASTO: a tool for searching orthologous groups [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W678-682. by Yi Zhou, Laura F. Landweber posted to ortholog blast algorithm by druvus on 2009-08-12 11:54:41 as along with 4 people Keywan guhjy bpb cerca
	BLAST Filter and GraphAlign: rule-based formation and analysis of sets of related DNA and protein sequences [My Copy] Nucl. Acids Res., Vol. 32, No. suppl_2. (1 July 2004), pp. W26-32. by John B. Spalding, Peter J. Lammers posted to blast by orzenil on 2009-08-08 17:35:00 as along with 1 person guhjy
	Current Comparative Table (CCT) automates customized searches of dynamic biological databases. [My Copy] Nucleic acids research, Vol. 33, No. Web Server issue. (1 July 2005) by Benjamin R. Landsteiner, Michael R. Olson, Robert Rutherford posted to blast by guhjy on 2009-08-05 03:23:40 as along with 1 person Neeperando
	RegExpBlasting (REB), a Regular Expression Blasting algorithm based on multiply aligned sequences. [My Copy] BMC bioinformatics, Vol. 10 Suppl 6 (2009) by F. Rubino, M. Attimonelli posted to blast by guhjy on 2009-07-21 08:45:32 as along with 1 person and 1 group sillitoe Orengo Group Journal Picks
	Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. [My Copy] Nucleic acids research, Vol. 25, No. 17. (1 September 1997), pp. 3389-3402. by S. F. Altschul, T. L. Madden, A. A. Schäffer, et al.J. Zhang, Z. Zhang, W. Miller, D. J. Lipman posted to blast method by BioNica on 2009-07-05 05:40:33 as along with 68 people and 5 groups rshe niallhaslam ucbcjbm timhubbard parnell tfuji maria_hauser jbhiatt yylin mgomes idoerg pjcite swp09 kgutwin mcbla cpwardell johanviklund daforerog nlapalu sebk tjimenez shung pwais dakelley knaseanka setar iakes miguel kaarsinogen bjorns bicko jmeppley chad_davis balajis nuke2005 eweaver david_parsons indigoviolet dullhunk robert dgront happy_manatee caporaso treangen kengg manzanita CitoJam jdelcampo aengisch rabio massivemayhem mirzazadeh azazello sujaikumar beatrizfernandez GustavoLacerda siebertm adijr viktor21614 mijam grottenolm bandrewfox edvin newton1234 mariakmejia granujilla marti CharlesM References for 3DSim paper EisenLab biomedical-nlp Microbial-Ecology Plantandetc
	Clustered sequence representation for fast homology search. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 14, No. 5. (June 2007), pp. 594-614. by M. Cameron, Y. Bernstein, H. E. Williams posted to algorithm blast clustering open-source software by sriesenfeld on 2009-07-02 20:20:35 as along with 1 person dgront
	Submillimetre surveys: The prospects for Herschel [My Copy] (22 Jun 2009) by Chris P. Pearson, Sophia A. Khan posted to blast cirb galaxies herschel high-z model submm survey ulirg by rleiton on 2009-06-25 01:45:26 as along with 1 person hallman
	Apollo: a community resource for genome annotation editing. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1836-1837. by Lee Ed, Harris Nomi, Gibson Mark, Chetty Raymond, Lewis Suzanna posted to annotation blast genome by guhjy on 2009-05-29 05:24:15 as along with 2 groups Journal picks TranscriptionalRegulationWithThermodynamicModels
	Construction of abstract state graphs with PVS [My Copy] Computer Aided Verification (1997), pp. 72-83. by Susanne Graf, Hassen Saidi posted to 1997 abstraction blast booleanprogram modelchecking slam by shimomura on 2009-05-14 15:58:16 as along with 1 person bfraser
	Software Verification with BLAST [My Copy] Model Checking Software (2003), pp. 624-624. by Thomas Henzinger, Ranjit Jhala, Rupak Majumdar, Grégoire Sutre posted to blast by streetlightios on 2009-05-12 04:06:09 as along with 2 people shimomura msakai
	The software model checker Blast [My Copy] International Journal on Software Tools for Technology Transfer (STTT), Vol. 9, No. 5. (1 October 2007), pp. 505-525. by Dirk Beyer, Thomas Henzinger, Ranjit Jhala, Rupak Majumdar posted to blast model-checking tool by streetlightios on 2009-05-12 04:03:42 as along with 5 people zhensong uisiong shimomura msakai zuleger
	Batch Blast Extractor: an automated blastx parser application [My Copy] BMC Genomics, Vol. 9, No. Suppl 2. (2008), S10. by Mehdi Pirooznia, Edward Perkins, Youping Deng posted to bioinformatics blast tools by orzenil on 2009-04-22 18:29:45 as along with 4 people arNQ dgroth daforerog guhjy
	NOBLAST and JAMBLAST: New Options for BLAST and a Java Application Manager for BLAST results [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 824-826. by Jacques Lagnel, Costas S. Tsigenopoulos, Ioannis Iliopoulos posted to bioinformatics blast software by Thaverkamp on 2009-04-21 09:56:25 as along with 5 people druvus nuin guhjy jmeppley agbiotec
	BEAP: The BLAST Extension and Alignment Program- a tool for contig construction and analysis of preliminary genome sequence. [My Copy] BMC research notes, Vol. 2, No. 1. (22 January 2009) by James E. Koltes, Zhi-Liang L. Hu, Eric Fritz, James M. Reecy posted to assembly blast next_generation by druvus on 2009-04-16 12:13:43 as along with 1 person guhjy
	BLAST: A Far-Infrared Measurement of the History of Star Formation [My Copy] (8 Apr 2009) by Enzo Pascale, Peter A. R. Ade, James J. Bock, et al.Edward L. Chapin, Mark J. Devlin, Simon Dye, Steve A. Eales, Matthew Griffin, Joshua O. Gundersen, Mark Halpern, Peter C. Hargrave, David H. Hughes, Jeff Klein, Gaelen Marsden, Philip Mauskopf, Lorenzo Moncelsi, Calvin B. Netterfield, Luca Olmi, Guillaume Patanchon, Marie Rex, Douglas Scott, Christopher Semisch, Nicholas Thomas, Matthew D. P. Truch, Carole Tucker, Gregory S. Tucker, Marco P. Viero, Donald V. Wiebe posted to blast cib fir formation goods spitzer star by rleiton on 2009-04-15 23:04:40 as
	BLAST: Resolving the Cosmic Submillimeter Background [My Copy] (8 Apr 2009) by Gaelen Marsden, Peter A. R. Ade, James J. Bock, et al.Edward L. Chapin, Mark J. Devlin, Simon R. Dicker, Matthew Griffin, Joshua O. Gundersen, Mark Halpern, Peter C. Hargrave, David H. Hughes, Jeff Klein, Philip Mauskopf, Benjamin Magnelli, Lorenzo Moncelsi, Calvin B. Netterfield, Henry Ngo, Luca Olmi, Enzo Pascale, Guillaume Patanchon, Marie Rex, Douglas Scott, Christopher Semisch, Nicholas Thomas, Matthew D. P. Truch, Carole Tucker, Gregory S. Tucker, Marco P. Viero, Donald V. Wiebe posted to agn blast cib goods ir submm survey by rleiton on 2009-04-15 23:02:36 as
	Radio and mid-infrared identification of BLAST source counterparts in the Chandra Deep Field South [My Copy] (8 Apr 2009) by Simon Dye, Peter A. R. Ade, James J. Bock, et al.Edward L. Chapin, Mark J. Devlin, James S. Dunlop, Stephen A. Eales, Matthew Griffin, Joshua O. Gundersen, Mark Halpern, Peter C. Hargrave, David H. Hughes, Jeff Klein, Gaelen Marsden, Philip Mauskopf, Lorenzo Moncelsi, Calvin B. Netterfield, Luca Olmi, Enzo Pascale, Guillaume Patanchon, Marie Rex, Douglas Scott, Christopher Semisch, Nicholas Thomas, Matthew D. P. Truch, Carole Tucker, Gregory S. Tucker, Marco P. Viero, Donald V. Wiebe posted to blast chandra mir radio sed spitzer by rleiton on 2009-04-15 21:18:38 as
	BLAST: Correlations in the Cosmic Far-Infrared Background at 250, 350, and 500 microns Reveal Clustering of Star-Forming Galaxies [My Copy] (8 Apr 2009) by Marco P. Viero, Peter A. R. Ade, James J. Bock, et al.Edward L. Chapin, Mark J. Devlin, Matthew Griffin, Joshua O. Gundersen, Mark Halpern, Peter C. Hargrave, David H. Hughes, Jeff Klein, Carrie J. Mactavish, Gaelen Marsden, Peter G. Martin, Philip Mauskopf, Lorenzo Moncelsi, Mattia Negrello, Calvin B. Netterfield, Luca Olmi, Enzo Pascale, Guillaume Patanchon, Marie Rex, Douglas Scott, Christopher Semisch, Nicholas Thomas, Matthew D. P. Truch, Carole Tucker, Gregory S. Tucker, Donald V. Wiebe posted to blast cib cluster galaxies starform by rleiton on 2009-04-15 21:11:52 as along with 1 person MarcellaVeneziani
	Having a BLAST with bioinformatics (and avoiding BLASTphemy). [My Copy] Genome Biol, Vol. 2, No. 10. (2001) by A. Pertsemlidis, J. W. Fondon posted to bioinformatics blast by orzenil on 2009-04-01 13:54:14 as along with 10 people and 2 groups sandfire karbak ziquje prtmht textoris shantanu cjeans sujaikumar scottstensland hpaces Bioinformatics MathBio
	The Design, Implementation, and Evaluation of mpiBLAST [My Copy] In In Proceedings of ClusterWorld 2003 (2003) by Aaron E. Darling, Lucas Carey, Wu-Chun Feng posted to blast parallel sequencing by bozdagd on 2009-03-30 16:33:00 as along with 1 person AaronDarling
	Massively parallel genomic sequence search on the Blue Gene/P architecture [My Copy] In SC '08: Proceedings of the 2008 ACM/IEEE conference on Supercomputing (2008), pp. 1-11. by Heshan Lin, Pavan Balaji, Ruth Poole, Carlos Sosa, Xiaosong Ma, Wu C. Feng posted to blast parallel sequencing by bozdagd on 2009-03-30 16:23:52 as
	Efficient Data Access for Parallel BLAST [My Copy] Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International In Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International (2005), pp. 72b-72b. by Heshan Lin, Xiaosong Ma, P. Chandramohan, A. Geist, N. Samatova posted to blast parallel sequencing by bozdagd on 2009-03-30 16:21:33 as
	PSIBLAST PairwiseStatSig: Reordering PSI-BLAST Hits Using Pairwise Statistical Significance. [My Copy] Bioinformatics (Oxford, England) (27 February 2009) by Ankit Agrawal, Xiaoqiu Huang posted to blast by guhjy on 2009-03-16 02:55:18 as
	FragIdent--automatic identification and characterisation of cDNA-fragments. [My Copy] BMC genomics, Vol. 10 (02 March 2009), 95. by D. Seelow, H. Goehler, K. Hoffmann posted to batch blast est sequence software by guhjy on 2009-03-16 02:27:05 as along with 2 people druvus natstreet
	WU-Blast2 server at the European Bioinformatics Institute. [My Copy] Nucleic acids research, Vol. 31, No. 13. (1 July 2003), pp. 3795-3798. by Rodrigo Lopez, Ville Silventoinen, Stephen Robinson, Asif Kibria, Warren Gish posted to blast ebi webservices by niallhaslam on 2009-02-12 10:13:09 as along with 4 people rshe orzenil guhjy alanrw
	Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Matteo Brilli, Alessio Mengoni, Marco Fondi, Marco Bazzicalupo, Pietro Lio, Renato Fani posted to blast phylogenetics by nuin on 2009-01-23 16:42:01 as along with 2 people taguchi druvus
	AutoFACT: An Automatic Functional Annotation and Classification Tool [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Liisa Koski, Michael Gray, Franz B. Lang, Gertraud Burger posted to annotation bioinformatics blast perl software by jmeppley on 2009-01-23 15:31:42 as along with 1 person sgoetz
	Genome BLAST distance phylogenies inferred from whole plastid and whole mitochondrion genome sequences [My Copy] BMC Bioinformatics, Vol. 7 (19 July 2006), 350. by Alexander F. Auch, Stefan R. Henz, Barbara R. Holland, Markus Goeker posted to blast genome phylogeny by druvus on 2009-01-22 14:40:00 as along with 1 person operon
	GenBlastA: enabling BLAST to identify homologous gene sequences. [My Copy] Genome research, Vol. 19, No. 1. (6 January 2009), pp. 143-149. by Rong She, Jeffrey S-C S. Chu, Ke Wang, Jian Pei, Nansheng Chen posted to blast homology sequence software by druvus on 2009-01-09 11:36:10 as along with 5 people rshe jessopher natstreet guhjy imtechnology
	GeneCAT--novel webtools that combine BLAST and co-expression analyses. [My Copy] Nucleic acids research (14 May 2008) by Marek Mutwil, Jens Obro, William G T G. Willats, Staffan Persson posted to blast co-expression by sanchezbuelna on 2009-01-04 04:47:11 as along with 2 people mariakmejia guhjy
	Zerg: a very fast BLAST parser library. [My Copy] Bioinformatics (Oxford, England), Vol. 19, No. 8. (22 May 2003), pp. 1035-1036. by A. C. Paquola, A. A. Machado, E. M. Reis, A. M. Da Silva, S. Verjovski-Almeida posted to blast software by guhjy on 2008-12-22 02:33:48 as
	NCBI BLAST: a better web interface. [My Copy] Nucleic acids research, Vol. 36, No. Web Server issue. (1 July 2008) by Mark Johnson, Irena Zaretskaya, Yan Raytselis, Yuri Merezhuk, Scott McGinnis, Thomas L. Madden posted to blast by guhjy on 2008-12-22 02:16:09 as along with 1 person agustinarce
	MEGAN analysis of metagenomic data [My Copy] Genome Research, Vol. 17, No. 3. (06 February 2007), pp. 377-386. by D. H. Huson, A. F. Auch, J. Qi, S. C. Schuster posted to blast dna-sequences metagenomics software by treangen on 2008-11-21 09:47:06 as along with 15 people and 2 groups ajsferreira taylor73 esyoun dakelley Thaverkamp druvus idoerg guhjy jmeppley azazello wenhan carpi alexl mjetten hpaces anammox microbiology_nijmegen
	FastBLAST: Homology Relationships for Millions of Proteins [My Copy] PLoS ONE, Vol. 3, No. 10. (31 October 2008), e3589. by Morgan N. Price, Paramvir S. Dehal, Adam P. Arkin posted to blast homology proteins by treangen on 2008-11-20 13:58:53 as along with 4 people AaronDarling natstreet druvus reyez
	Squid - a simple bioinformatics grid. [My Copy] BMC Bioinformatics, Vol. 6 (2005) by P. C. Carvalho, R. V. Glória, A. B. de Miranda, W. M. Degrave posted to blast parallel software by druvus on 2008-11-20 08:48:13 as along with 8 people and 1 group thegoose2 Jodiey treangen eweaver moborg fisherp tharris hryk RepublicJoew
	PIG--the pathogen interaction gateway [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_1. (1 January 2009), pp. D647-650. by Tim Driscoll, Matthew D. Dyer, T. M. Murali, Bruno W. Sobral posted to blast database interactions networks pathogen pathomics proteins visualization by behindtherabbit to the group Bioinformatics on 2008-11-17 20:47:54 as
	Homology search for genes [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i97-103. by Xuefeng Cui, Tomas Vinar, Brona Brejova, Dennis Shasha, Ming Li posted to algorithm blast gene homology mapping software by druvus on 2008-11-17 09:28:55 as along with 3 people rshe guhjy GustavoLacerda
	BOV--a web-based BLAST output visualization tool. [My Copy] BMC genomics, Vol. 9 (15 September 2008), 414. by Rajesh Gollapudi, Kashi Vishwanath V. Revanna, Chris Hemmerich, Sarah Schaack, Qunfeng Dong posted to blast by guhjy on 2008-11-12 09:00:16 as along with 4 people and 1 group natstreet druvus cisevol operon BergmanLab
	Database indexing for production MegaBLAST searches. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008), pp. 1757-1764. by Aleksandr Morgulis, George Coulouris, Yan Raytselis, Thomas L. Madden, Richa Agarwala, Alejandro A. Schäffer posted to blast indexing software by druvus on 2008-11-04 11:54:07 as along with 5 people maria_hauser natstreet jdelcampo Neeperando APRegier
	PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results. [My Copy] BMC bioinformatics, Vol. 8 (09 February 2007), 53. by Ji He, Xinbin Dai, Xuechun Zhao posted to blast database software by druvus on 2008-10-13 11:29:53 as along with 4 people daforerog natstreet guhjy grahamc
	BioParser: a tool for processing of sequence similarity analysis reports. [My Copy] Appl Bioinformatics, Vol. 5, No. 1. (2006), pp. 49-53. by M. Catanho, D. Mascarenhas, W. Degrave, A. B. de Miranda posted to blast database software by druvus on 2008-10-13 11:28:28 as along with 2 people natstreet guhjy
	Automated Compositional Abstraction Re nement for Concurrent C Programs: A Two-Level Approach [My Copy] by Sagar Chaki, Karen Yorav, Edmund Clarke posted to 2003 blast concurrent modelchecking read verification by shimomura on 2008-10-10 03:18:37 as

Note: You may cite this page as: http://www.citeulike.org/tag/blast

Result page: 1 2 3 Next

bioinformatics	40
software	20
sequence	13
homology	10
modelchecking	10
algorithm	9
database	6
search	6
sequencing	6
slam	6
verification	6
alignment	5
fpga	5
psi-blast	5
annotation	4
batch	4
genome	4
methods	4
parallel	4
16s	3
2005	3
cib	3
clone_libraries	3
gene	3
goods	3
injury	3
local-alignment	3
ortholog	3
parallelcomputing	3
phylogeny	3
proteins	3
read	3
sofware	3
submm	3
visualisation	3
visualization	3
2001	2
2002	2
2003	2
bioperl	2
buggotea	2
cluster	2
cse	2
erw	2
explosive	2
extremevalue	2
fir	2
galaxies	2
genomics	2
go	2
landmine	2
molecular	2
network	2
networks	2
pam	2
parser	2
pathogen	2
pathomics	2
perl	2
phylogenetics	2
prediction	2
primer	2
protein	2
proteomics	2
psi	2
sequence-jockey	2
similarity	2
spitzer	2
survey	2
tool	2
tools	2
war	2
1997	1
accuracy	1
air	1
alignmenttool	1
bioinformatic	1
cirb	1
clustalw	1
data-mining	1
databases	1
drug-paper	1
emboss	1
est	1
formation	1
gapped	1
local	1
model-checking	1
nucleic	1
rflp	1
sed	1
semantic-web	1
server	1
snp	1
squid	1
starform	1
substitution-matrix	1
sysadmin	1
tatusova-99	1
webservices	1

Tag blast [112 articles] Export

Related Tags