Tag boolean [102 articles] Export

Recent papers classified by the tag boolean.

	Modular logical modelling of the budding yeast cell cycle [My Copy] Mol. BioSyst. (2009) by Adrien Faure, Aurelien Naldi, Fabrice Lopez, Claudine Chaouiya, Andrea Ciliberto, Denis Thieffry posted to logical_modelling boolean by karthikraman on 2009-11-11 14:41:22 as along with 1 person agonzale
	Discrete dynamic modeling of cellular signaling networks. [My Copy] Methods in enzymology, Vol. 467 (2009), pp. 281-306. by Réka Albert, Rui-Sheng S. Wang posted to signalling boolean by karthikraman on 2009-11-11 09:36:13 as
	Algebraic models of biochemical networks. [My Copy] Methods in enzymology, Vol. 467 (2009), pp. 163-196. by Reinhard Laubenbacher, Abdul Salam S. Jarrah posted to systems_biology mathematical_models boolean by karthikraman on 2009-11-11 09:28:57 as
	Reconstructing signaling pathways from RNAi data using probabilistic Boolean threshold networks. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 17. (1 September 2009), pp. 2229-2235. by Lars Kaderali, Eva Dazert, Ulf Zeuge, Michael Frese, Ralf Bartenschlager posted to signaling rnai reconstruction dragan boolean by ptrobajo on 2009-11-02 10:41:21 as along with 1 person fastjoe23
	Boolean implication networks derived from large scale, whole genome microarray datasets [My Copy] Genome Biology, Vol. 9 (30 October 2008), R157. by Debashis Sahoo, David L. Dill, Andrew J. Gentles, Robert Tibshirani, Sylvia K. Plevritis posted to scale networks microarray large boolean by dolchan on 2009-10-29 17:05:59 as along with 8 people zufar jfr rdiaz imina pengchy guhjy mdperry bcondon
	Reversible Boolean networks I: distribution of cycle lengths [My Copy] Physica D Nonlinear Phenomena, Vol. 149 (February 2001), pp. 11-29. by S. N. Coppersmith, L. P. Kadanoff, Z. Zhang posted to networks boolean by amozeika on 2009-10-29 13:52:06 as
	Propagation of external regulation and asynchronous dynamics in random Boolean networks [My Copy] Chaos, Vol. 17, No. 2. (June 2007) by H. Mahmoudi, A. Pagnani, M. Weigt, R. Zecchina posted to networks boolean by amozeika on 2009-10-29 11:33:54 as
	A Computational Scheme Based on Random Boolean Networks [My Copy] Transactions on Computational Systems Biology X (2008), pp. 41-58. by Elena Dubrova, Maxim Teslenko, Hannu Tenhunen posted to minsum fall09aging espresso boolean aging by verdicchio on 2009-10-23 21:32:44 as
	On Characterization of Attractor Basins of Fuzzy Multiple Attractor Cellular Automata [My Copy] Fundam. Inf., Vol. 86, No. 1,2. (2008), pp. 143-168. by Pradipta Maji posted to minsum fall09aging espresso boolean aging by verdicchio on 2009-10-23 21:16:29 as
	How bioinformatics can help reverse engineer human aging [My Copy] Ageing Research Reviews, Vol. 3, No. 2. (April 2004), pp. 125-141. by J. Demagalhaes, O. Toussaint posted to minsum fall09aging espresso boolean aging by verdicchio on 2009-10-23 21:12:47 as along with 1 person cerca
	Qualitatively modelling and analysing genetic regulatory networks: a Petri net approach [My Copy] Bioinformatics, Vol. 23, No. 3. (1 February 2007), pp. 336-343. by L. Jason Steggles, Richard Banks, Oliver Shaw, Anil Wipat posted to minsum fall09aging espresso boolean aging by verdicchio on 2009-10-23 20:52:00 as along with 4 people laurabertens guhjy bootsy alanrw
	On the distribution of the number of ones in a Boolean Pascal's triangle [My Copy] Discrete Mathematics and Applications, Vol. 16, No. 3. (2006), pp. 271-279. by Malyshev, F.M., Kutyreva, E.V. posted to nnet boolean by beete on 2009-10-23 11:11:43 as
	The Stability of Boolean Networks with Generalized Canalizing Rules [My Copy] (3 Oct 2009) by Andrew Pomerance, Michelle Girvan, Ed Ott posted to stability canalizing boolean by erzsoravasz on 2009-10-06 18:27:35 as
	Transforming Boolean models to continuous models: methodology and application to T-cell receptor signaling [My Copy] BMC Systems Biology, Vol. 3, No. 1. (28 September 2009), 98. by Dominik Wittmann, Jan Krumsiek, Julio S. Rodriguez, Douglas Lauffenburger, Steffen Klamt, Fabian Theis posted to network equation differential continuos boolean by rdiaz on 2009-10-02 16:04:40 as along with 5 people colinveal perkeo cmzmasek brianb peterhilbers
	The effect of network topology on the stability of discrete state models of genetic control [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 20. (19 May 2009), pp. 8209-8214. by Andrew Pomerance, Edward Ott, Michelle Girvan, Wolfgang Losert posted to stability network boolean by rdiaz on 2009-09-28 12:23:11 as along with 5 people megraw trfield schwartzjmc TRHvidsten deanmalmgren
	Boolean networks using the chi-square test for inferring large-scale gene regulatory networks. [My Copy] BMC bioinformatics, Vol. 8 (01 February 2007), 37. by Haseong Kim, Jae K. Lee, Taesung Park posted to gene_regulatory_networks chi_square_test boolean by sockington on 2009-09-17 18:45:49 as along with 2 people shigepong heliopais
	Fuzzy Logic Analysis of Kinase Pathway Crosstalk in TNF/EGF/Insulin-Induced Signaling [My Copy] PLoS Comput Biol, Vol. 5, No. 4. (3 April 2009), e1000340. by Bree B. Aldridge, Julio Saez-Rodriguez, Jeremy L. Muhlich, Peter K. Sorger, Douglas A. Lauffenburger posted to signaling logical knowledge fuzzy boolean base by ptrobajo on 2009-09-11 21:47:02 as along with 4 people abhishek_tiwari renatomilani brianb agonzale
	Emergent decision-making in biological signal transduction networks. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 105, No. 6. (12 February 2008), pp. 1913-1918. by Tomás Helikar, John Konvalina, Jack Heidel, Jim A. Rogers posted to signaling network model logical knowledge boolean base by ptrobajo on 2009-09-06 20:34:46 as along with 3 people krokicki guhjy Ema
	The logic of EGFR/ErbB signaling: theoretical properties and analysis of high-throughput data. [My Copy] PLoS computational biology, Vol. 5, No. 8. (7 August 2009), e1000438. by Regina Samaga, Julio Saez-Rodriguez, Leonidas G. Alexopoulos, Peter K. Sorger, Steffen Klamt posted to signaling network model logical knowledge egfr boolean base by ptrobajo on 2009-09-06 20:29:42 as along with 3 people guhjy mstumpf frohike
	Computing with Noise - Phase Transitions in Boolean Formulas [My Copy] (27 Aug 2009) by Alexander Mozeika, David Saad, Jack Raymond posted to phase_transition logical_gate information_theory boolean by marinari on 2009-08-30 17:14:25 as along with 1 person janpaniev
	Network model of survival signaling in large granular lymphocyte leukemia [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 42. (21 October 2008), pp. 16308-16313. by Ranran Zhang, Mithun V. Shah, Jun Yang, et al.Susan B. Nyland, Xin Liu, Jong K. Yun, Réka Albert, Thomas P. Loughran posted to network model metabolic boolean algebric by vvoorr on 2009-08-25 17:03:39 as along with 1 person akraemer
	Adaptive intervention in probabilistic boolean networks [My Copy] Bioinformatics, Vol. 25, No. 16. (15 August 2009), pp. 2042-2048. by Ritwik Layek, Aniruddha Datta, Ranadip Pal, Edward R. Dougherty posted to network intervention boolean by rdiaz on 2009-08-21 12:17:10 as
	Graph-Based Algorithms for Boolean Function Manipulation [My Copy] IEEE Transactions on Computers, Vol. 35 (1986), pp. 677-691. by Randal E. Bryant posted to binary-decision-diagram boolean directed-acyclic-graph graph by brothers on 2009-07-10 02:41:08 as along with 2 people jerometremblay Maderlock
	Uncovering operational interactions in genetic networks using asynchronous Boolean dynamics [My Copy] Journal of Theoretical Biology (12 June 2009) by L. Tournier, M. Chavesa posted to boolean modeling network by agonzale on 2009-06-18 03:03:53 as
	Boolean network simulations for life scientists. [My Copy] Source code for biology and medicine, Vol. 3, No. 1. (14 November 2008) by István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert posted to boolean modeling by cannin on 2009-06-10 21:31:22 as along with 3 people daforerog dolchan dswan
	Logical analysis of the budding yeast cell cycle [My Copy] Journal of Theoretical Biology, Vol. 257, No. 4. (21 April 2009), pp. 543-559. by D. J. Irons posted to boolean by cc logic by janani137 on 2009-05-29 20:40:17 as along with 1 person Koh
	A Boolean measure of similarity [My Copy] Discrete Appl. Math., Vol. 154, No. 16. (2006), pp. 2242-2246. by Martin Anthony, Peter L. Hammer posted to boolean by ono on 2009-05-29 03:34:24 as
	Boolean network-based analysis of the apoptosis network: irreversible apoptosis and stable surviving. [My Copy] Journal of theoretical biology, Vol. 259, No. 4. (21 August 2009), pp. 760-769. by Zhongxing Mai, Haiyan Liu posted to boolean network by agonzale on 2009-05-18 12:11:37 as along with 1 person schwartzjmc
	The regulatory network of E. coli metabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response. [My Copy] BMC systems biology, Vol. 2, No. 1. (2008), 21. by Areejit Samal, Sanjay Jain posted to boolean network by ocs on 2009-04-16 22:30:48 as along with 1 person ajitkumar22
	KIM – a semantic platform for information extraction and retrieval [My Copy] Nat. Lang. Eng., Vol. 10, No. 3-4. (2004), pp. 375-392. by Borislav Popov, Atanas Kiryakov, Damyan Ognyanoff, Dimitar Manov, Angel Kirilov posted to boolean search semantic by jgronski on 2009-04-13 00:14:03 as along with 2 people and 1 group bwalenz dvallet NETS-UAM
	Semantic search [My Copy] In WWW '03 (2003), pp. 700-709. by R. Guha, Rob Mccool, Eric Miller posted to boolean search semantic by jgronski on 2009-04-13 00:12:58 as along with 9 people and 1 group nliu82 dyaaalbakour Lasse dullhunk ianturton RiccardoAlbertoni searchy goettl nigno ImatiGESemantic
	Managing Semantic Content for the Web [My Copy] IEEE Internet Computing, Vol. 6, No. 4. (July 2002), pp. 80-87. by Amit Sheth, Clemens Bertram, David Avant, Brian Hammond, Krysztof Kochut, Yashodhan Warke posted to boolean search semantic by jgronski on 2009-04-13 00:08:00 as along with 1 person Scis0000002
	Searching the web with shoe [My Copy] In AAAI Workshop 2000 (2000), pp. 35-40. by Jeff Heflin, James Hendler posted to boolean search semantic web by jgronski on 2009-04-13 00:04:44 as
	Discrete-query quantum algorithm for NAND trees [My Copy] (16 Feb 2007) by Andrew M. Childs, Richard Cleve, Stephen P. Jordan, David Yeung posted to algorithm boolean quantum by citeUlike123 on 2009-04-07 21:50:27 as
	Inferring connectivity of genetic regulatory networks using information-theoretic criteria. [My Copy] IEEE/ACM transactions on computational biology and bioinformatics / IEEE, ACM, Vol. 5, No. 2. (n 2008), pp. 262-274. by W. Zhao, E. Serpedin, E. R. Dougherty posted to boolean inference information network by dolchan on 2009-03-25 18:50:45 as
	Identification of genetic networks from a small number of gene expression patterns under the Boolean network model. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1999), pp. 17-28. by T. Akutsu, S. Miyano, S. Kuhara posted to boolean inference network by dolchan on 2009-03-25 18:48:44 as along with 1 person and 1 group dlobo GEB
	Reveal, a general reverse engineering algorithm for inference of genetic network architectures. [My Copy] Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (1998), pp. 18-29. by S. Liang, S. Fuhrman, R. Somogyi posted to boolean inference network reveal by dolchan on 2009-03-25 18:47:56 as
	Comparison of probabilistic Boolean network and dynamic Bayesian network approaches for inferring gene regulatory networks [My Copy] BMC Bioinformatics, Vol. 8, No. Suppl 7. (2007) by Peng Li, Chaoyang Zhang, Edward Perkins, Ping Gong, Youping Deng posted to bayesian boolean dynamic network pbn probabilistic by dolchan on 2009-03-25 18:45:59 as along with 2 people ivokwee heliopais
	Reverse engineering of temporal Boolean networks from noisy data using evolutionary algorithms [My Copy] Neurocomputing, Vol. 62 (December 2004), pp. 111-129. by Carlos Cotta, Jose M. Troya posted to boolean inference network reveal temporal by dolchan on 2009-03-25 18:44:57 as along with 1 person heliopais
	Basin Entropy in Boolean Network Ensembles [My Copy] Physical Review Letters, Vol. 98, No. 15. (2007), 158701. by Peter Krawitz, Ilya Shmulevich posted to boolean network rbn-model by kinop on 2009-03-22 09:32:02 as along with 2 people joseph_x_zhou dpf
	A natural class of robust networks [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 15. (22 July 2003), pp. 8710-8714. by Maximino Aldana, Philippe Cluzel posted to boolean rbn-model by kinop on 2009-03-22 08:57:58 as along with 6 people and 5 groups dlobo tomhebbron jmenche eldan jwdietrich timflutre GEB MathBio Cybernetics Biomedical_Cybernetics AQUA-FONTIS-Study
	Robustness and evolvability in genetic regulatory networks [My Copy] Journal of Theoretical Biology, Vol. 245, No. 3. (07 April 2007), pp. 433-448. by M. Aldana, E. Balleza, S. Kauffman, O. Resendiz posted to boolean genetic rbn-model by kinop on 2009-03-22 08:36:54 as along with 1 person and 1 group dlobo GEB
	Effects of alternative connectivity on behavior of randomly constructed Boolean networks [My Copy] Physica D: Nonlinear Phenomena, Vol. 170, No. 2. (1 September 2002), pp. 143-161. by C. Oosawa posted to boolean rbn-model by kinop on 2009-03-22 08:29:53 as
	Boolean networks with variable number of inputs (K) [My Copy] Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 14, No. 2. (2004), pp. 205-216. by Metod Skarja, Barbara Remic, Igor Jerman posted to boolean rbn-model by kinop on 2009-03-22 06:51:36 as
	The number and probability of canalizing functions [My Copy] Physica D: Nonlinear Phenomena, Vol. 197, No. 3-4. (15 October 2004), pp. 211-221. by W. Just, I. Shmulevich, J. Konvalina posted to boolean rbn-model by kinop on 2009-03-22 04:36:32 as
	The ensemble approach to understand genetic regulatory networks [My Copy] Physica A Statistical Mechanics and its Applications, Vol. 340 (September 2004), pp. 733-740. by S. Kauffman posted to boolean rbn-model by kinop on 2009-03-22 03:34:05 as along with 2 people and 3 groups dlobo mattjb GEB ComplexAdaptiveSystems DSTO-CAS
	Boolean dynamics of networks with scale-free topology [My Copy] Physica D: Nonlinear Phenomena, Vol. 185, No. 1. (15 October 2003), pp. 45-66. by Maximino Aldana posted to boolean rbn-model scale-free by kinop on 2009-03-22 02:52:13 as along with 2 people and 1 group dlobo jotwin GEB
	Scaling in Ordered and Critical Random Boolean Networks [My Copy] Physical Review Letters, Vol. 90, No. 6. (2003) by J. E. S. Socolar, S. A. Kauffman posted to boolean rbn-model by kinop on 2009-03-22 02:08:05 as along with 1 person and 1 group girvan Boolean_Nets
	Relevant elements, magnetization and dynamical properties in Kauffman networks: A numerical study [My Copy] Physica D: Nonlinear Phenomena, Vol. 115, No. 3-4. (01 May 1998), pp. 203-218. by U. Bastolla posted to boolean rbn-model by kinop on 2009-03-22 02:05:40 as
	Number of attractors in random Boolean networks [My Copy] Physical Review E, Vol. 72, No. 1. (14 July 2005), 016110. by Barbara Drossel posted to boolean rbn-model by kinop on 2009-03-22 02:02:26 as

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network	36
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rbn-model	14
kauffman	12
grn	8
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logic	6
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