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Tag cgh [117 articles]

Recent papers classified by the tag cgh.
  • Characterization of breast cancer by array comparative genomic hybridization.
    Biochem Cell Biol, Vol. 85, No. 4. (August 2007), pp. 497-508.
    by J Climent, JL Garcia, JH Mao, J Arsuaga, J Perez-Losada
    posted to breast mtdna web characterization cgh cancer by Zephyrus on 2008-07-16 22:17:49 as **** along with 1 person and 1 group jfr Breast cancer
  • Intraspecies variation in bacterial genomes: the need for a species genome concept
    Trends in Microbiology, Vol. 8, No. 9. (1 September 2000), pp. 396-401.
    by Ruiting Lan, Peter R Reeves
    posted to cgh gene islands lateral pathogenicity transfer by wwlsung on 2006-10-08 01:34:43 as **
  • A new approach for the analysis of bacterial microarray-based Comparative Genomic Hybridization: insights from an empirical study.
    BMC Genomics, Vol. 6, No. 1. (2005)
    by EN Taboada, RR Acedillo, CC Luebbert, WA Findlay, JH Nash
    posted to cgh microarray by wwlsung on 2006-10-08 01:29:20 as **
  • Improved analytical methods for microarray-based genome-composition analysis.
    Genome Biol, Vol. 3, No. 11. (29 October 2002)
    by CC Kim, EA Joyce, K Chan, S Falkow
    posted to cgh microarray software by wwlsung on 2006-10-08 01:14:05 as **
  • SIGMA: A System for Integrative Genomic Microarray Analysis of Cancer Genomes
    BMC Genomics, Vol. 7 (27 December 2006), 324.
    by Raj Chari, William W Lockwood, Bradley P Coe, Anna Chu, Devon Macey, Andrew Thomson, Jonathan J Davies, Calum Macaulay, Wan L Lam
    posted to cgh microarray software by waszak on 2007-11-13 21:23:48 as ** along with 2 people jfr blackm0k
  • Visualization of genomic aberrations using Affymetrix SNP arrays.
    Bioinformatics (30 November 2006)
    by André Müller, Karlheinz Holzmann, Hans A A Kestler
    posted to cgh loh by vpschulz on 2006-12-12 17:54:26 as ** along with 2 people jfr shigepong
  • Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays
    Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1575-1584.
    by Daisuke Komura, Fan Shen, Shumpei Ishikawa, Karen R Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E Hurles, Charles Lee, Stephen W Scherer, Keith W Jones, Michael H Shapero, Jing Huang, Hiroyuki Aburatani
    posted to cgh loh by vpschulz on 2006-12-12 17:51:24 as ** along with 7 people and 4 groups debasis jfr dchughes giovanni jeremymiller frohike shigepong Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
  • notes Comparative genomic hybridization.
    Annu Rev Genomics Hum Genet, Vol. 6 (2005), pp. 331-354.
    by D Pinkel, DG Albertson
    posted to array cgh review by uz_labu_laimi on 2007-03-04 05:34:03 as ** along with 1 group Bioinformatics
  • Array comparative genomic hybridization and its applications in cancer.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by D Pinkel, DG Albertson
    posted to cancer cgh comparative genomic hybridization microarray by tvdbulck on 2008-03-21 14:21:33 as ** along with 6 people and 3 groups textoris rfrousse pcahan1 archroad rdiaz frohike Institut_Hemato_Oncologie_Pediatrique Neuroblastome_SFCE Bioinformatics
  • Array-CGH and breast cancer
    Breast Cancer Research, Vol. 8 (30 June 2006), 210.
    by Erik H van Beers, Petra M Nederlof
    posted to breast cancer cgh by tuck on 2006-12-14 03:08:51 as ** along with 1 person rdiaz
  • Genetic regulators of large-scale transcriptional signatures in cancer
    Nature Genetics, Vol. 38, No. 4. (05 March 2006), pp. 421-430.
    by Adam S Adler, Meihong Lin, Hugo Horlings, Dimitry SA Nuyten, Marc J van de Vijver, Howard Y Chang
    posted to cgh copy_number microarray transcription_factor by tuck on 2006-04-28 06:13:46 as ** along with 5 people ihpark oelemento jfr ccots Ao_Li2007
  • Genome-wide screening of genomic alterations and their clinicopathologic implications in non-small cell lung cancers.
    Clin Cancer Res, Vol. 11, No. 23. (1 December 2005), pp. 8235-8242.
    by TM Kim, SH Yim, JS Lee, MS Kwon, JW Ryu, HM Kang, H Fiegler, NP Carter, YJ Chung
    posted to cgh by tabu on 2006-01-25 23:52:13 as **
  • High resolution analysis of genomic aberrations by metaphase and array comparative genomic hybridization identifies candidate tumour genes in lung cancer cell lines
    Cancer Letters, Vol. In Press, Corrected Proof
    by Hong Zhu, David C Lam, Kam C Han, Vicky P Tin, Wai S Suen, Elaine Wang, Wah K Lam, Wei W Cai, Lap P Chung, Maria P Wong
    posted to cancer cgh by tabu on 2006-03-08 00:22:24 as **
  • Structural variation in the human genome
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 85-97.
    by Lars Feuk, Andrew R Carson, Stephen W Scherer
    posted to cgh human by tabu on 2006-03-31 14:08:32 as ** along with 14 people and 10 groups cgreal balajis bala balicea dchughes darcyduke adepace AaronDarling rdiaz massivemayhem cat_worth jmrivort ccr Lip CGREL structural_bioinformatics Bioinformatics EisenLab SFX-Verde-team-MITLibraries G4ID G-quadruplex Supramolecular DictyosteliumGroup Genetics-of-Gambling
  • Integrative genomic analyses identify MITF as a lineage survival oncogene amplified in malignant melanoma
    Nature, Vol. 436, No. 7047., pp. 117-122.
    by Levi A Garraway, Hans R Widlund, Mark A Rubin, Gad Getz, Aaron J Berger, Sridhar Ramaswamy, Rameen Beroukhim, Danny A Milner, Scott R Granter, Jinyan Du, Charles Lee, Stephan N Wagner, Cheng Li, Todd R Golub, David L Rimm, Matthew L Meyerson, David E Fisher, William R Sellers
    posted to cancer cgh pathway by tabu on 2006-06-21 01:58:24 as ** along with 4 people kentsis acorner jfr rdiaz
  • De novo monosomy 9p24.3-pter and trisomy 17q24.3-qter characterised by microarray comparative genomic hybridisation in a fetus with an increased nuchal translucency.
    Prenat Diagn (31 January 2006)
    by Sophie Brisset, Serdar Kasakyan, Aurore Coulomb C L'herminé, Valérie Mairovitz, Evelyne Gautier, Marie-Cécile C Aubry, Moncef Benkhalifa, Gérard Tachdjian
    posted to cgh by tabu on 2006-02-03 03:00:32 as **
  • Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans
    Genome Biology, Vol. 9 (22 February 2008), R41.
    by Guanggan Hu, Iris Liu, Anita Sham, Jason E Stajich, Fred S Dietrich, James W Kronstad
    posted to fungi cryptococcus comparative_genomics cgh by stajich on 2008-05-19 06:48:44 as read along with 1 group Berkeley Mycology
  • Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3763-3770.
    by Weil R Lai, Mark D Johnson, Raju Kucherlapati, Peter J Park
    posted to cgh by shigepong on 2007-06-21 03:53:12 as *** along with 2 people srp33 debasis
  • A comparison study: applying segmentation to array CGH data for downstream analyses
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4084-4091.
    by Hanni Willenbrock, Jane Fridlyand
    posted to cgh by shigepong on 2007-06-21 03:52:53 as ***
  • Flexible and Accurate Detection of Genomic Copy-Number Changes from aCGH.
    PLoS Comput Biol, Vol. 3, No. 6. (22 June 2007)
    by Oscar M M Rueda, Ramón Díaz-Uriarte
    posted to cgh by shigepong on 2007-06-27 07:39:25 as ***** along with 1 person and 1 group jfr Bioinformatics
  • A hierarchical clustering method for estimating copy number variation.
    Biostatistics (23 October 2006)
    by Baifang Xing, Celia M T M Greenwood, Shelley B B Bull
    posted to cgh by shigepong on 2007-01-03 15:41:54 as *** along with 1 person and 1 group jfr Bioinformatics
  • Using expression arrays for copy number detection: an example from E. Coli
    BMC Bioinformatics, Vol. 8 (14 June 2007), 203.
    by Dmitriy Skvortsov, Diana Abdueva, Michael E Stitzer, Steven E Finkel, Simon Tavare
    posted to cgh by shigepong on 2007-06-17 07:54:44 as ***** along with 2 people and 2 groups ealloza bioguru2000 Bioinformatics BioinfoCIPF
  • Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome
    Nature Genetics, Vol. 39, No. 1. (10 December 2006), pp. 126-130.
    by Jianbing Mu, Philip Awadalla, Junhui Duan, Kate M Mcgee, Jon Keebler, Karl Seydel, Gilean AT Mcvean, Xin-Zhuan Su
    posted to cgh by shigepong on 2007-01-03 15:37:03 as ** along with 5 people smbe2008 fernan becarmson GeeSharpMinor xingxu
  • A viable allele of Mcm4 causes chromosome instability and mammary adenocarcinomas in mice
    Nature Genetics, Vol. 39, No. 1. (03 December 2006), pp. 93-98.
    by Naoko Shima, Ana Alcaraz, Ivan Liachko, Tavanna R Buske, Catherine A Andrews, Robert J Munroe, Suzanne A Hartford, Bik K Tye, John C Schimenti
    posted to cgh by shigepong on 2007-01-03 15:36:48 as ** along with 1 person cerami
  • Chaotic license for genetic instability and cancer
    Nature Genetics, Vol. 39, No. 1., pp. 10-11.
    by Anindya Dutta
    posted to cgh by shigepong on 2007-01-03 15:36:27 as ** along with 1 person cerami
  • Analysis of Array CGH Data for Cancer Studies Using Fused Quantile Regression.
    Bioinformatics (20 July 2007)
    by Youjuan Li, Ji Zhu
    posted to cancer cgh by shigepong on 2007-07-25 06:59:21 as **** along with 1 person and 1 group rdiaz Bioinformatics
  • Circular binary segmentation for the analysis of array-based DNA copy number data.
    Biostatistics, Vol. 5, No. 4. (October 2004), pp. 557-572.
    by AB Olshen, ES Venkatraman, R Lucito, M Wigler
    posted to cgh by shigepong on 2007-06-20 16:22:29 as ***** along with 4 people pcahan1 OscarRueda jackjackjjj bioguru2000
  • Chromosome instability, chromosome transcriptome, and clonal evolution of tumor cell populations.
    Proc Natl Acad Sci U S A, Vol. 104, No. 21. (22 May 2007), pp. 8995-9000.
    by C Gao, K Furge, J Koeman, K Dykema, Y Su, ML Cutler, A Werts, P Haak, GF Vande Woude
    posted to cgh by shigepong on 2007-05-25 05:59:29 as **** along with 1 person jjohnson17
  • Robust smooth segmentation approach for array CGH data analysis.
    Bioinformatics (27 July 2007)
    by Jian Huang, Arief Gusnanto, Kathleen O'sullivan, Johan Staaf, Ake Borg, Yudi Pawitan
    posted to cgh by shigepong on 2007-08-01 07:23:48 as ***** along with 1 person and 1 group rdiaz Bioinformatics
  • Continuous-index hidden Markov modelling of array CGH copy number data.
    Bioinformatics (19 February 2007)
    by Susann Stjernqvist, Tobias Rydén, Martin Sköld, Johan Staaf
    posted to cgh by shigepong on 2007-02-22 17:02:54 as ***** along with 1 group Bioinformatics
  • Chromosomally unstable mouse tumours have genomic alterations similar to diverse human cancers
    Nature (21 May 2007)
    by Richard S Maser, Bhudipa Choudhury, Peter J Campbell, Bin Feng, Kwok-Kin Wong, Alexei Protopopov, Jennifer O’neil, Alejandro Gutierrez, Elena Ivanova, Ilana Perna, Eric Lin, Vidya Mani, Shan Jiang, Kate Mcnamara, Sara Zaghlul, Sarah Edkins, Claire Stevens, Cameron Brennan, Eric S Martin, Ruprecht Wiedemeyer, Omar Kabbarah, Cristina Nogueira, Gavin Histen, Jon Aster, Marc Mansour, Veronique Duke, Letizia Foroni, Adele K Fielding, Anthony H Goldstone, Jacob M Rowe, Yaoqi A Wang, Thomas A Look, Michael R Stratton, Lynda Chin, Andrew P Futreal, Ronald A Depinho
    posted to cgh by shigepong on 2007-05-24 11:30:29 as ***** along with 3 people and 1 group ealloza jackjackjjj cjeans BioinfoCIPF
  • High-resolution copy number analysis of paraffin-embedded archival tissue using SNP BeadArrays.
    Genome Res (31 January 2007)
    by Jan Oosting, Esther H H Lips, Ronald van Eijk, Paul H C H Eilers, Károly Szuhai, Cisca Wijmenga, Hans Morreau, Tom van Wezel
    posted to cgh by shigepong on 2007-02-04 19:02:52 as *** along with 1 person jfr
  • Accurate and reliable high-throughput detection of copy number variation in the human genome
    Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1566-1574.
    by Heike Fiegler, Richard Redon, Dan Andrews, Carol Scott, Robert Andrews, Carol Carder, Richard Clark, Oliver Dovey, Peter Ellis, Lars Feuk, Lisa French, Paul Hunt, Dimitrios Kalaitzopoulos, James Larkin, Lyndal Montgomery, George H Perry, Bob W Plumb, Keith Porter, Rachel E Rigby, Diane Rigler, Armand Valsesia, Cordelia Langford, Sean J Humphray, Stephen W Scherer, Charles Lee, Matthew E Hurles, Nigel P Carter
    posted to cgh by shigepong on 2007-01-03 16:17:32 as ** along with 7 people and 4 groups debasis jfr balicea dchughes mgaldzic ccr colinveal Bioinformatics G4ID CHIP Genetics-of-Gambling
  • Novel risk stratification of patients with neuroblastoma by genomic signature, which is independent of molecular signature
    Oncogene, Vol. aop, No. current.
    by N Tomioka, S Oba, M Ohira, A Misra, J Fridlyand, S Ishii, Y Nakamura, E Isogai, T Hirata, Y Yoshida, S Todo, Y Kaneko, DG Albertson, D Pinkel, BG Feuerstein, A Nakagawara
    posted to cancer cgh nbl by shigepong on 2007-08-20 08:05:54 as read
  • Sparse representation and Bayesian detection of genome copy number alterations from microarray data.
    Bioinformatics (18 January 2008)
    by Roger Pique-Regi, Jordi Monso-Varona, Antonio Ortega, Robert Seeger, Timothy Triche, Shahab Asgharzadeh
    posted to cgh by shigepong on 2008-01-23 07:26:18 as **
  • Markers improve clustering of CGH data.
    Bioinformatics (6 December 2006)
    by Jun Liu, Sanjay Ranka, Tamer Kahveci
    posted to cgh clustering by shigepong on 2007-01-03 16:03:52 as **
  • A statistical approach for array CGH data analysis.
    BMC Bioinformatics, Vol. 6 (2005)
    by F Picard, S Robin, M Lavielle, C Vaisse, JJ Daudin
    posted to cgh by shigepong on 2007-06-21 04:04:08 as *** along with 6 people giovenko jfr archroad rdiaz OscarRueda jackjackjjj
  • A faster circular binary segmentation algorithm for the analysis of array CGH data.
    Bioinformatics (18 January 2007)
    by E S S Venkatraman, A B B Olshen
    posted to cgh by shigepong on 2007-01-21 23:32:17 as ***** along with 1 person and 1 group rdiaz Bioinformatics
  • notes CGHcall: calling aberrations for array CGH tumor profiles.
    Bioinformatics (31 January 2007)
    by Mark A A van de Wiel, Kyung In I Kim, Sjoerd J J Vosse, Wessel N N van Wieringen, Saskia M M Wilting, Bauke Ylstra
    posted to cgh by shigepong on 2007-02-04 07:45:57 as *****
  • Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes
    Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853.
    by Barbara E Stranger, Matthew S Forrest, Mark Dunning, Catherine E Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E Hurles, Emmanouil T Dermitzakis
    posted to cgh by shigepong on 2007-02-23 21:58:35 as ***** along with 12 people and 3 groups jyuh jfr dpollard balicea rdiaz qfwills djkt vplagnol jlangdon xingxu cisevol caseybrown Bioinformatics EisenLab cis-regulatory-evolution
  • notes Array CGH using whole genome amplification of fresh-frozen and formalin-fixed, paraffin-embedded tumor DNA.
    Genomics (31 October 2005)
    by Suzanne E E Little, Raisa Vuononvirta, Jorge S S Reis-Filho, Rachael Natrajan, Marjan Iravani, Kerry Fenwick, Alan Mackay, Alan Ashworth, Kathy Pritchard-Jones, Chris Jones
    posted to amplification cgh embedded ffpe fixed formalin microarray paraffin by rlmcinnes on 2006-01-20 02:28:13 as ***
  • notes Candidate Genes in Breast Cancer Revealed by Microarray-Based Comparative Genomic Hybridization of Archived Tissue
    Cancer Res, Vol. 65, No. 2. (15 January 2005), pp. 439-447.
    by Michelle Nessling, Karsten Richter, Carsten Schwaenen, Peter Roerig, Gunnar Wrobel, Swen Wessendorf, Bjorn Fritz, Martin Bentz, Hans-Peter Sinn, Bernhard Radlwimmer, Peter Lichter
    posted to cgh embedded ffpe fixed formalin microarray paraffin by rlmcinnes on 2006-01-20 02:24:19 as ** along with 1 person jfr
  • Unequivocal delineation of clinicogenetic subgroups and development of a new model for improved outcome prediction in neuroblastoma.
    J Clin Oncol, Vol. 23, No. 10. (1 April 2005), pp. 2280-2299.
    by J Vandesompele, M Baudis, K De Preter, N Van Roy, P Ambros, N Bown, C Brinkschmidt, H Christiansen, V Combaret, M Lastowska, J Nicholson, A O'Meara, D Plantaz, R Stallings, B Brichard, C Van den Broecke, S De Bie, A De Paepe, G Laureys, F Speleman
    posted to 17 cgh chromosome neuroblastoma stratification by rfrousse on 2005-06-28 06:05:07 as read along with 2 groups Institut_Hemato_Oncologie_Pediatrique Neuroblastome_SFCE
  • MLGA a rapid and cost-efficient assay for gene copy-number analysis
    Nucl. Acids Res., Vol. 35, No. 17. (27 September 2007), e115.
    by Magnus Isaksson, Johan Stenberg, Fredrik Dahl, Ann-Charlotte Thuresson, Marie-Louise Bondeson, Mats Nilsson
    posted to cgh by rdiaz on 2007-09-27 14:41:27 as ** along with 1 person jyuh
  • A stepwise framework for the normalization of array CGH data.
    BMC Bioinformatics, Vol. 6 (2005)
    by M Khojasteh, WL Lam, RK Ward, C MacAulay
    posted to cgh normalization by rdiaz on 2006-10-30 14:08:55 as **
  • Analysis of genomic DNA alterations and mRNA expression patterns in a panel of human pancreatic cancer cell lines.
    Genes Chromosomes Cancer, Vol. 44, No. 1. (September 2005), pp. 37-51.
    by S Gysin, P Rickert, K Kastury, M McMahon
    posted to cgh expression by rdiaz on 2006-10-30 13:57:56 as ** along with 1 person bioguru2000
  • A genome-wide map of aberrantly expressed chromosomal islands in colorectal cancer
    Molecular Cancer, Vol. 5 (18 September 2006), 37.
    by Eike Staub, Joern Groene, Detlev Mennerich, Stefan Roepcke, Irina Klaman, Bernd Hinzmann, Esmeralda Castanos-Velez, Benno Mann, Christian Pilarsky, Thomas Brummendorf, Birgit Weber, Heinz-Johannes Buhr, Andre Rosenthal
    posted to cgh by rdiaz on 2006-10-30 13:50:23 as *** along with 2 people jfr cpnP
  • Computer-generated complex filter for an all-optical and a digital-optical hybrid correlator
    Optical Engineering, Vol. 41, No. 1. (2002), pp. 105-111.
    by Philip Birch, Rupert Young, Frédéric C Tournier, David Budgett, Christopher Chatwin
    posted to iims correlator cgh by philbirch on 2008-06-30 14:56:39 as read
  • Fully complex optical modulation with an analogue ferroelectric liquid crystal spatial light modulator
    Optics Communications, Vol. 175, No. 4-6. (1 March 2000), pp. 347-352.
    by Philip Birch, Rupert Young, Chris Chatwin, Maria Farsari, David Budgett, John Richardson
    posted to iims cgh by philbirch on 2008-06-30 15:12:14 as read
  • A comparison of the iterative Fourier transform method and evolutionary algorithms for the design of diffractive optical elements
    Optics and Lasers in Engineering, Vol. 33, No. 6. (1 June 2000), pp. 439-448.
    by Philip Birch, Rupert Young, Maria Farsari, Chris Chatwin, David Budgett
    posted to iims cgh by philbirch on 2008-06-30 15:10:42 as read
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