Tag chip-seq [124 articles] Export

Recent papers classified by the tag chip-seq.

	Sole-Search: an integrated analysis program for peak detection and functional annotation using ChIP-seq data. [My Copy] Nucleic acids research (11 November 2009), gkp1012. by Kimberly R. Blahnik, Lei Dou, Henriette O'Geen, et al.Timothy McPhillips, Xiaoqin Xu, Alina R. Cao, Sushma Iyengar, Charles M. Nicolet, Bertram Ludäscher, Ian Korf, Peggy J. Farnham posted to chip-seq by fenghezi on 2009-11-24 19:42:54 as along with 1 person idonaldson
	Differential binding and co-binding pattern of FOXA1 and FOXA3 and their relation to H3K4me3 in HepG2 cells revealed by ChIP-seq [My Copy] Genome Biology, Vol. 10, No. 11. (2009), R129. by Mehdi Motallebipour, Adam Ameur, Madhu Sudhan Reddy Bysani, et al.Kalicharan Patra, Ola Wallerman, Jonathan Mangion, Melissa Barker, Kevin McKernan, Jan Komorowski, Claes Wadelius posted to sequencing immunoprecipitation high-throughput h3k4me3 foxa1foxa2 forkhead chromatin chip-seq by Stew to the group Bioinformatics - CRUK on 2009-11-24 10:29:17 as
	Computation for ChIP-seq and RNA-seq studies. [My Copy] Nature methods, Vol. 6, No. 11 Suppl. (15 November 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to short-reads rna-seq chip-seq by urgi on 2009-11-23 17:50:23 as along with 23 people and 2 groups Jporci pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	Human-specific transcriptional regulation of CNS development genes by FOXP2. [My Copy] Nature, Vol. 462, No. 7270. (12 November 2009), pp. 213-217. by Genevieve Konopka, Jamee M. Bomar, Kellen Winden, et al.Giovanni Coppola, Zophonias O. Jonsson, Fuying Gao, Sophia Peng, Todd M. Preuss, James A. Wohlschlegel, Daniel H. Geschwind posted to forkhead chip-seq by idonaldson on 2009-11-23 13:50:46 as along with 5 people and 1 group jeremymiller Geknitics qayub yyfwuhan djkt Journal picks
	Hierarchical hidden Markov model with application to joint analysis of ChIP-chip and ChIP-seq data. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 14. (15 July 2009), pp. 1715-1721. by Hyungwon Choi, Alexey I. Nesvizhskii, Debashis Ghosh, Zhaohui S. Qin posted to integration chip-seq chip-chip by jfr on 2009-11-16 13:14:33 as along with 12 people and 1 group tonamswish rdiaz fpattyn jcbarret guhjy hendrik85 inesdesantiago nklee polivares ewilban1 idonaldson humburg Journal picks
	Visualization of genomic data with the Hilbert curve [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1231-1235. by Simon Anders posted to software r chip-seq by jfr on 2009-11-09 14:39:35 as along with 14 people and 1 group jandot ewilban1 polivares inesdesantiago djkt behindtherabbit guhjy humburg Thaverkamp svenrahmann jmeppley idonaldson rdiaz paszkows BergmanLab
	Insights from genomic profiling of transcription factors [My Copy] Nature Reviews Genetics, Vol. 10, No. 9. (11 August 2009), pp. 605-616. by Peggy J. Farnham posted to transcription_factors chip-seq by inesdesantiago on 2009-11-08 16:24:33 as along with 17 people and 2 groups heliopais fenghezi nklee samanthacooper fpattyn druvus frohike stubrown qayub megraw TRHvidsten mkiyer ericrpaquet ilyashl jbhiatt idonaldson danmaclean Journal picks Chinnaiyan Lab
	Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression [My Copy] Genome Research (3 November 2009) by Yong Cheng, Weisheng Wu, Swathi Ashok Kumar, et al.Duonan Yu, Wulan Deng, Tamara Tripic, David C. King, Kuan-Bei Chen, Ying Zhang, Daniela Drautz, Belinda Giardine, Stephan C. Schuster, Webb Miller, Francesca Chiaromonte, Yu Zhang, Gerd A. Blobel, Mitchell J. Weiss, Ross C. Hardison posted to chip-seq by idonaldson on 2009-11-05 11:01:42 as
	Combinatorial patterns of histone acetylations and methylations in the human genome [My Copy] Nature Genetics, Vol. 40, No. 7. (15 June 2008), pp. 897-903. by Zhibin Wang, Chongzhi Zang, Jeffrey A. Rosenfeld, et al.Dustin E. Schones, Artem Barski, Suresh Cuddapah, Kairong Cui, Tae-Young Roh, Weiqun Peng, Michael Q. Zhang, Keji Zhao posted to histones histone_modifications histone_modification epigenetics data_set chip-seq cd4_t_cells bioinformatics 2008 by suizifish on 2009-11-05 04:28:35 as along with 16 people and 1 group akakak hagechouchin443 RyuOgawa tonamswish sebastien_vigneau gderwin oelemento raylim coela jernst bpcusack kambiz caseybrown djkt kengg inesdesantiago Epigenetics
	Global analysis of the insulator binding protein CTCF in chromatin barrier regions reveals demarcation of active and repressive domains [My Copy] Genome Research, Vol. 19, No. 1. (January 2009), pp. 24-32. by Suresh Cuddapah, Raja Jothi, Dustin E. Schones, Tae-Young Roh, Kairong Cui, Keji Zhao posted to tfbs tf histone data_set ctcf chip-seq bioinformatics 2009 by suizifish on 2009-11-05 03:23:54 as along with 13 people and 1 group aprickett gdb fenghezi clearbluespring rschulz xingxu sebastien_vigneau cassj caseybrown polivares inesdesantiago oelemento maximilianh CTCF
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to tool enhancer chip-seq bioinfo by tonamswish on 2009-10-27 19:20:00 as along with 23 people and 2 groups hzoltan ewilban1 samanthacooper ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to tool hmm chip-seq bioinfo bayesian by tonamswish to the group Bioinformatics on 2009-10-27 13:08:34 as along with 11 people and 3 groups Vincent_Rouilly dswan fenghezi inesdesantiago idonaldson polivares mkiyer druvus stajich humburg rschulz JLab BergmanLab Mycology
	An Integrated Approach to Identifying Cis-Regulatory Modules in the Human Genome [My Copy] PLoS ONE, Vol. 4, No. 5. (12 May 2009), e5501. by Kyoung-Jae Won, Saurabh Agarwal, Li Shen, Robert Shoemaker, Bing Ren, Wei Wang posted to tool tf hmm chip-seq bioinfo by tonamswish on 2009-10-27 03:01:09 as along with 3 people and 1 group guhjy idonaldson cisevol BergmanLab
	ChIP-seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted to review high-throughput-sequencing chip-seq by heliopais on 2009-10-22 16:57:05 as along with 24 people and 6 groups akakak hzoltan dchughes RyuOgawa giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez qayub fenghezi tonamswish robertrentzsch polivares idonaldson rschulz cvaldes danmaclean Journal picks Orengo Group Journal Picks JLab BergmanLab CTCF Chromatin
	Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing. [My Copy] BMC genomics, Vol. 10 (21 January 2009), 37. by Philippe Lefrançois, Ghia M. Euskirchen, Raymond K. Auerbach, et al.Joel Rozowsky, Theodore Gibson, Christopher M. Yellman, Mark Gerstein, Michael Snyder posted to yeast transcription_factors transcription chip-seq by Vincent_Rouilly on 2009-10-20 15:52:37 as along with 5 people guhjy lusk emptyhb WanderingAengus abizar
	Human DNA methylomes at base resolution show widespread epigenomic differences [My Copy] Nature, Vol. 462, No. 7271. (14 October 2009), pp. 315-322. by Ryan Lister, Mattia Pelizzola, Robert H. Dowen, et al.R. David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R. Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo, Lee Edsall, Jessica Antosiewicz-Bourget, Ron Stewart, Victor Ruotti, A. Harvey Millar, James A. Thomson, Bing Ren, Joseph R. Ecker posted to smallrna mecg chip-seq by fenghezi on 2009-10-15 20:48:18 as along with 26 people and 4 groups hyojinkang gbloeb akakak guhjy jessopher malay gdb qayub greg neils megraw mamitamura tonamswish rsaito clearbluespring rschulz RyuOgawa hagechouchin443 devinmhellesen daveGerrard polivares dswan colinveal frohike liqbbi ethanmj JLab CTCF BergmanLab Journal picks
	The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets [My Copy] Bioinformatics, Vol. 25, No. 20. (15 October 2009), pp. 2730-2731. by John W. Nicol, Gregg A. Helt, Steven G. Blanchard, Archana Raja, Ann E. Loraine posted to software chip-seq by inesdesantiago on 2009-10-09 19:06:23 as along with 10 people and 2 groups jforment dokky daforerog torfinnnome idonaldson pkonings sebastien_vigneau guhjy natstreet druvus Bioinformatics Core Service ronbun_2009au
	Protein occupancy landscape of a bacterial genome. [My Copy] Molecular cell, Vol. 35, No. 2. (31 July 2009), pp. 247-253. by Tiffany Vora, Alison K. Hottes, Saeed Tavazoie posted to whole-genome transcription chip-seq bacteria by sconlan on 2009-10-05 16:42:42 as along with 2 people kintoki ashkelon13
	Impact of chromatin structures on DNA processing for genomic analyses. [My Copy] PloS one, Vol. 4, No. 8. (20 August 2009), e6700. by Leonid Teytelman, Bilge Ozaydin, Oliver Zill, et al.Philippe Lefrançois, Michael Snyder, Jasper Rine, Michael B. Eisen posted to review chip-seq by inesdesantiago on 2009-10-03 01:13:17 as along with 5 people and 4 groups fenghezi lthorrez polivares humburg stajich JLab CTCF BergmanLab Mycology
	ChIP-seq: welcome to the new frontier [My Copy] Nat Meth, Vol. 4, No. 8. (01 August 2007), pp. 613-614. by Elaine R. Mardis posted to chip-seq by pradiptaray on 2009-10-02 16:14:47 as along with 5 people ewilban1 giovenko zhlei sleepingcell slevy03
	CEAS: cis-regulatory element annotation system [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2605-2606. by Hyunjin Shin, Tao Liu, Arjun K. Manrai, X. Shirley Liu posted to chip-seq annotation by druvus on 2009-09-28 08:02:25 as along with 5 people maximilianh ewilban1 guhjy idonaldson nuin
	Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing [My Copy] Nature Methods, Vol. 4, No. 8. (11 June 2007), pp. 651-657. by Gordon Robertson, Martin Hirst, Matthew Bainbridge, et al.Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L. Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones posted to transcription_factors chip-seq by absterga on 2009-09-25 01:02:23 as along with 13 people and 1 group samanthacooper stubrown ewilban1 fpattyn polivares caseybrown guhjy vega kengg ghattem slevy03 dquest raiyar Plantandetc
	Comparative study on ChIP-seq data: normalization and binding pattern characterization [My Copy] Bioinformatics, Vol. 25, No. 18. (15 September 2009), pp. 2334-2340. by Cenny Taslim, Jiejun Wu, Pearlly Yan, et al.Greg Singer, Jeffrey Parvin, Tim Huang, Shili Lin, Kun Huang posted to normalization comparison chip-seq chip by Stew to the group Bioinformatics - CRUK on 2009-09-24 09:02:01 as along with 8 people and 1 group tonamswish stubrown inesdesantiago ewilban1 guhjy mkiyer humburg rschulz Chinnaiyan Lab
	A Hierarchy of H3K4me3 and H3K27me3 Acquisition in Spatial Gene Regulation in Xenopus Embryos [My Copy] Developmental Cell, Vol. 17, No. 3. (15 September 2009), pp. 425-434. by Robert C. Akkers, Simon J. van Heeringen, Ulrike G. Jacobi, et al.Eva M. Janssen-Megens, Kees-Jan Françoijs, Hendrik G. Stunnenberg, Gert J. Veenstra posted to rna-seq chip-seq by ghattem to the group SIMR bioinformatics on 2009-09-21 20:09:04 as along with 2 people fenghezi inesdesantiago
	ChIP-Seq of ER\|[alpha]\| and RNA polymerase II defines genes differentially responding to ligands [My Copy] EMBO J, Vol. 28, No. 10. (04 April 2009), pp. 1418-1428. by Willem-Jan Welboren, Marc A. van Driel, Eva M. Janssen-Megens, et al.Simon J. van Heeringen, Fred C. G. J. Sweep, Paul N. Span, Hendrik G. Stunnenberg posted to tamoxifen pol2 mcf7 era chip-seq bioinfo by tonamswish on 2009-09-20 03:48:16 as along with 1 person ewilban1
	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 523. by David Nix, Samir Courdy, Kenneth Boucher posted to chip-seq by darian on 2009-09-11 18:28:48 as along with 9 people and 2 groups gdb slv23 inesdesantiago ewilban1 floatingpoint WanderingAengus magusina ghattem caseybrown Bioinformatics - CRUK SIMR bioinformatics
	F-Seq: a feature density estimator for high-throughput sequence tags [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2537-2538. by Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey posted to chip-seq by darian on 2009-09-11 17:10:33 as along with 18 people and 2 groups hzoltan n00c idonaldson michaelbarton inesdesantiago gdb ewilban1 tonamswish guhjy kmdaily cassj fhalbrit jfr rschulz polivares cthachuk zhouyu aprasad JLab BergmanLab
	ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome [My Copy] PLoS Comput Biol, Vol. 4, No. 10. (17 October 2008), e1000201. by Gary Hon, Bing Ren, Wei Wang posted to chip-seq by darian on 2009-09-11 16:07:00 as along with 6 people sebastien_vigneau ewilban1 guhjy magusina inesdesantiago djkt
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted to chip-seq by darian on 2009-09-11 16:01:31 as along with 8 people mkiyer tonamswish ewilban1 rschulz polivares caseybrown djkt epigenetics
	A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome [My Copy] Genome Research, Vol. 18, No. 7. (12 July 2008), pp. 1073-1083. by Travis N. Mavrich, Ilya P. Ioshikhes, Bryan J. Venters, et al.Cizhong Jiang, Lynn P. Tomsho, Ji Qi, Stephan C. Schuster, Istvan Albert, B. Franklin Pugh posted to nucleosomes high-throughput-sequencing chromatin-structure chip-seq by humburg on 2009-09-10 23:31:09 as along with 7 people hagechouchin443 talponer siebert sonjadaniela vega aalibes gdb
	The transcriptional program controlled by the stem cell leukemia gene Scl/Tal1 during early embryonic hematopoietic development. [My Copy] Blood, Vol. 113, No. 22. (28 May 2009), pp. 5456-5465. by Nicola K. Wilson, Diego Miranda-Saavedra, Sarah Kinston, et al.Nicolas Bonadies, Samuel D. Foster, Fernando Calero-Nieto, Mark A. Dawson, Ian J. Donaldson, Stephanie Dumon, Jonathan Frampton, Rekin's Janky, Xiao-Hong H. Sun, Sarah A. Teichmann, Andrew J. Bannister, Berthold Göttgens posted to ngs me gottgens chip-seq by idonaldson on 2009-09-10 14:43:46 as
	ID1 promotes expansion and survival of primary erythroid cells and is a target of JAK2V617F-STAT5 signaling. [My Copy] Blood, Vol. 114, No. 9. (27 August 2009), pp. 1820-1830. by Andrew D. Wood, Edwin Chen, Ian J. Donaldson, et al.Shilpa Hattangadi, Karly A. Burke, Mark A. Dawson, Diego Miranda-Saavedra, Harvey F. Lodish, Anthony R. Green, Berthold Göttgens posted to ngs me gottgens chip-seq by idonaldson on 2009-09-10 14:42:52 as
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to chip-seq by darian on 2009-09-07 18:37:41 as along with 41 people and 7 groups sameersoi lp2 ilyashl ajbattle jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique bpb jfr balajis pradiptaray dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
	High-resolution profiling of histone methylations in the human genome. [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837. by Artem Barski, Suresh Cuddapah, Kairong Cui, et al.Tae-Young Y. Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao posted to chip-seq by darian on 2009-09-07 18:33:00 as along with 22 people and 2 groups rsaito tonamswish stubrown fpattyn hagechouchin443 absterga ewilban1 suizifish jochenG caseybrown raylim jernst giovenko guhjy kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha inesdesantiago dquest JLab Plantandetc
	Genome-Wide Analysis of Protein-DNA Interactions [My Copy] Annual Review of Genomics and Human Genetics, Vol. 7, No. 1. (2006), pp. 81-102. by Tae H. Kim, Bing Ren posted to chip-seq by darian on 2009-09-07 18:16:48 as along with 5 people cabbagezs ewilban1 sebastien_vigneau epigenetics waraz
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip-seq by darian on 2009-09-07 18:10:49 as along with 24 people and 2 groups hzoltan Vincent_Rouilly stubrown mkiyer humburg cassj floatingpoint WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology
	FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology [My Copy] Bioinformatics, Vol. 24, No. 15. (1 August 2008), pp. 1729-1730. by Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, Steven J. M. Jones posted to chip-seq by darian on 2009-09-07 18:04:56 as along with 19 people and 2 groups hzoltan n00c polivares idonaldson tonamswish ewilban1 humburg Thaverkamp natstreet druvus stajich cassj WanderingAengus rschulz jfr sconlan reyez guhjy vega Bioinformatics Mycology
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti T. Tammi posted to chip-seq by darian on 2009-09-07 17:46:55 as along with 18 people and 1 group hzoltan biovils stubrown cthachuk GustavoLacerda n00c bmenten natstreet sameersoi svenrahmann xiechao semrich pkonings rdiaz dswan sleepingcell neils magusina Bioinformatics
	Mapping and quantifying mammalian transcriptomes by RNA-Seq. [My Copy] Nature methods, Vol. 5, No. 7. (30 July 2008), pp. 621-628. by Ali Mortazavi, Brian A. Williams, Kenneth McCue, Lorian Schaeffer, Barbara Wold posted to chip-seq by darian on 2009-09-07 17:30:19 as along with 42 people and 2 groups manduca cthachuk hzoltan jwfoley heliopais juokcho aktas debasis bertelsen idonaldson stubrown dswan ewilban1 mtagaya woodson8 burak jonilaserson inesdesantiago ThomasDOtto n00c GustavoG ghattem vplagnol druvus cfvillalta vmsr poschm dandaman shikin jmcq rschulz lp2 tmcphillips jfr myourshaw megraw GeeSharpMinor caseybrown xingxu guhjy shurjo gdb Bioinformatics SIMR bioinformatics
	Differential Apaf-1 levels allow cytochrome c to induce apoptosis in brain tumors but not in normal neural tissues [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 52. (26 December 2007), pp. 20820-20825. by Carrie E. Johnson, Yolanda Y. Huang, Amanda B. Parrish, et al.Michelle I. Smith, Allyson E. Vaughn, Qian Zhang, Kevin M. Wright, Terry Van Dyke, Robert J. Wechsler-Reya, Sally Kornbluth, Mohanish Deshmukh posted to chip-seq by darian on 2009-09-07 17:24:37 as along with 1 person burak
	Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning [My Copy] Nature, Vol. 452, No. 7184. (17 February 2008), pp. 215-219. by Shawn J. Cokus, Suhua Feng, Xiaoyu Zhang, et al.Zugen Chen, Barry Merriman, Christian D. Haudenschild, Sriharsa Pradhan, Stanley F. Nelson, Matteo Pellegrini, Steven E. Jacobsen posted to chip-seq by darian on 2009-09-07 17:07:53 as along with 15 people and 1 group druvus iamlily1046 ychang0918 rschulz natstreet iris42 mmartin hkuhn kengg usagi-kirin djkt ghattem epigenetics mdimon slonik KCL & UCL Bioinformatics
	Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity [My Copy] Nucl. Acids Res., Vol. 37, No. 15. (1 August 2009), e104. by Nicolas Philippe, Anthony Boureux, Laurent Brehelin, Jorma Tarhio, Therese Commes, Eric Rivals posted to chip-seq analysis by inesdesantiago on 2009-08-19 00:41:04 as along with 5 people fstrozzi sotacam jmcq guhjy xwbcn
	Genome-wide identification of DNA-protein interactions using chromatin immunoprecipitation coupled with flow cell sequencing. [My Copy] The Journal of endocrinology, Vol. 201, No. 1. (1 April 2009), pp. 1-13. by Brad G. Hoffman, Steven J. Jones posted to chip-seq analysis by inesdesantiago on 2009-08-19 00:40:44 as along with 3 people stubrown guhjy abizar
	Genome-wide relationship between histone H3 lysine 4 mono- and tri-methylation and transcription factor binding [My Copy] Genome Research, Vol. 18, No. 12. (3 December 2008), pp. 1906-1917. by A. Gordon Robertson, Mikhail Bilenky, Angela Tam, et al.Yongjun Zhao, Thomas Zeng, Nina Thiessen, Timothee Cezard, Anthony P. Fejes, Elizabeth D. Wederell, Rebecca Cullum, Ghia Euskirchen, Martin Krzywinski, Inanc Birol, Michael Snyder, Pamela A. Hoodless, Martin Hirst, Marco A. Marra, Steven J. M. Jones posted to tf nucleosomes human high-throughput-sequencing chip-seq by humburg on 2009-08-14 06:42:46 as along with 8 people tonamswish gdb ewilban1 natstreet raylim maximilianh jernst cpreviti
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to software chip-seq by isimpson on 2009-08-13 22:02:25 as along with 24 people and 3 groups hzoltan fpattyn stubrown huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	Extracting transcription factor targets from ChIP-Seq data [My Copy] Nucl. Acids Res., Vol. 37, No. 17. (1 September 2009), e113. by Geetu Tuteja, Peter White, Jonathan Schug, Klaus H. Kaestner posted to tool tfbs chip-seq by idonaldson on 2009-08-11 13:47:54 as along with 14 people and 4 groups hzoltan Vincent_Rouilly mfgreen ewilban1 guhjy mkiyer rschulz fenghezi clearbluespring thegoose robeirne inesdesantiago malcook polivares Chinnaiyan Lab SIMR bioinformatics BergmanLab Journal picks
	Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing [My Copy] Nucl. Acids Res., Vol. 36, No. 14. (1 August 2008), pp. 4549-4564. by Elizabeth D. Wederell, Mikhail Bilenky, Rebecca Cullum, et al.Nina Thiessen, Melis Dagpinar, Allen Delaney, Richard Varhol, Yongjun Zhao, Thomas Zeng, Bridget Bernier, Matthew Ingham, Martin Hirst, Gordon Robertson, Marco A. Marra, Steven Jones, Pamela A. Hoodless posted to chip-seq forkhead by idonaldson on 2009-08-10 10:58:33 as
	Chromatin immunoprecipitation sequencing (ChIP-Seq) on the SOLiD[trade] system [My Copy] Nat Meth, Vol. 6, No. 4. (April 2009) by Anjali Shah posted to chip-seq forkhead by idonaldson on 2009-07-31 15:37:59 as
	Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells. [My Copy] Nature biotechnology, Vol. 27, No. 4. (April 2009), pp. 361-368. by Madeleine P. Ball, Jin Billy B. Li, Yuan Gao, et al.Je-Hyuk H. Lee, Emily M. LeProust, In-Hyun H. Park, Bin Xie, George Q. Daley, George M. Church posted to epigenetics chip-seq methylation by guhjy on 2009-07-28 02:55:01 as along with 5 people and 1 group saravana bpcusack neils absterga jbhiatt BenosLab
	Targeted recruitment of histone modifications in humans predicted by genomic sequences. [My Copy] Journal of computational biology : a journal of computational molecular cell biology, Vol. 16, No. 2. (February 2009), pp. 341-355. by G. C. Yuan posted to bioinf chip-seq by guhjy on 2009-07-28 02:51:01 as

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chip-chip	41
bioinformatics	30
chromatin	30
analysis	29
human	27
deep-seq	26
software	26
review	25
tool	25
mouse	24
histone	19
genome	17
high-throughput-sequencing	17
bioinfo	16
ctcf	16
hmm	16
sequencing	16
analysis-tool	14
transcription	14
nucleosome	12
promoter	12
algorithm	11
methylation	11
tf	11
tfbs	11
enhancer	10
epigenetics	10
h3k4me3	10
chip	9
chromatin-structure	9
factor	9
genome-wide	9
rna-seq	9
transcription-factor	9
gene	8
method	8
p300	8
enhancers	7
modification	7
nucleosomes	7
peak	7
peak-finder	7
454	6
acetylation	6
bayesian	6
conservation	6
hts	6
promoters	6
stats-model	6
t-cells	6
transcription_factors	6
yeast	6
background	5
comp-bio	5
expression	5
forkhead	5
genomics	5
hela	5
normalization	5
regulation	5
solexa	5
binding	4
comparison	4
dnasei-hs	4
histone_modification	4
insulator	4
java	4
macs	4
network	4
ngs	4
polii	4
ucsc-browser	4
calling	3
cis-regulation	3
cis-regulatory-elements	3
cmyc	3
data_set	3
essrb	3
experiment-planning	3
h3k36me3	3
h3k4me	3
high-throughput	3
immunoprecipitation	3
liver	3
massivly_parallel_sequencing	3
medip	3
modifications	3
msp	3
pipeline	3
rat	3
read	3
read-coverage	3
smad1	3
sox2	3
stat1	3
tcfcp2l1	3
visualisation	3
wtd	3
xset	3
zfx	3

Tag chip-seq [124 articles] Export

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