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Recent papers classified by the tag chip2.

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	Genome-wide Map of Nucleosome Acetylation and Methylation in Yeast [My Copy] Cell, Vol. 122, No. 4. (26 August 2005), pp. 517-527. by Dmitry K. Pokholok, Christopher T. Harbison, Stuart Levine, et al.Megan Cole, Nancy M. Hannett, Tong I. Lee, George W. Bell, Kimberly Walker, P. Alex Rolfe, Elizabeth Herbolsheimer posted to chip2 chromatin regulatory by koller on 2006-09-19 01:51:41 as along with 6 people and 1 group humburg hagechouchin443 nucleosome kengg olympos redfish99213 Plantandetc
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to chip2 cis-regulation network regulatory transcription by koller on 2006-09-19 01:50:34 as along with 29 people and 8 groups viren4388 daveGerrard Dulce talponer wowalz siebert alokm tuck lyongu kaspermunch dpollard balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics EisenLab FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
	Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae [My Copy] Genome Research, Vol. 16, No. 5. (May 2006), pp. 627-635. by Markus J. HerrgÃ¥rd, Baek-Seok Lee, Vasiliy Portnoy, Bernhard Palsson posted to chip2 metabolic network network_motif reconstruction regulatory transcription by koller on 2006-08-31 06:35:02 as along with 9 people and 3 groups schwartzjmc michaelbarton JeremyZucker nickluscombe aswin kengg raiyar cjeans edwardmorrissey EBI-regulation steinmetzlab Plantandetc
	Linking DNA-binding proteins to their recognition sequences by using protein microarrays. [My Copy] Proc Natl Acad Sci U S A (19 June 2006) by Su-Wen W. Ho, Ghil Jona, Christina T L T. Chen, Mark Johnston, Michael Snyder posted to chip2 cis-regulation sequence_motif transcription by koller on 2006-08-31 01:31:53 as along with 4 people and 3 groups emilyhare samal nickluscombe kengg EisenLab EBI-regulation Plantandetc
	Computational discovery of gene modules and regulatory networks [My Copy] Nat Biotech, Vol. 21, No. 11. (12 October 2003), pp. 1337-1342. by Ziv Bar-Joseph, Georg K. Gerber, Tong I. Lee, et al.Nicola J. Rinaldi, Jane Y. Yoo, Francois Robert, D. Benjamin Gordon, Ernest Fraenkel, Tommi S. Jaakkola, Richard A. Young, David K. Gifford posted to chip2 cis-regulation network reconstruction transcription by koller on 2006-08-26 02:17:54 as along with 17 people and 1 group meanerelk stharward myzhang wangbo Borelli ggrot dragonrez bayesian wnpx nickluscombe frohike karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Francois Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to chip2 cis-regulation network reconstruction transcription by koller on 2006-08-26 02:17:09 as along with 35 people and 2 groups antonkratz mmm8668tw frohike viren4388 mjoach kmdaily kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki dquest siebert dbk-lab TNT
	Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data [My Copy] BMC Bioinformatics, Vol. 5, No. 1. (18 March 2004), 31. by Feng Gao, Barrett Foat, Harmen Bussemaker posted to chip2 network reconstruction regulatory transcription by koller on 2006-08-26 02:12:23 as along with 9 people and 1 group antonkratz lusk tmmurali tuck gpalidwor nickluscombe Ao_Li2007 mariakmejia tvdbulck EBI-regulation
	Extensive low-affinity transcriptional interactions in the yeast genome. [My Copy] Genome Res (29 June 2006) by Amos Tanay posted to chip2 cis-regulation sequence_motif by koller on 2006-08-25 21:33:38 as along with 6 people and 2 groups devin indigoviolet dpollard balicea lusk emptyhb TranscriptionalRegulationWithThermodynamicModels EisenLab
	Core transcriptional regulatory circuitry in human embryonic stem cells. [My Copy] Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956. by Laurie A. Boyer, Tong Ihn I. Lee, Megan F. Cole, et al.Sarah E. Johnstone, Stuart S. Levine, Jacob P. Zucker, Matthew G. Guenther, Roshan M. Kumar, Heather L. Murray, Richard G. Jenner, David K. Gifford, Douglas A. Melton, Rudolf Jaenisch, Richard A. Young posted to chip2 cis-regulation network network_motif reconstruction by koller on 2006-08-25 21:02:21 as along with 14 people jodavila rklancer kentsis tardigrade balicea tabu cconboy Stew faisalm mikaelhuss tdmckee brant dquest kengg
	Discovering regulatory and signalling circuits in molecular interaction networks. [My Copy] Bioinformatics (Oxford, England), Vol. 18 Suppl 1, No. suppl_1. (1 July 2002), pp. S233-240. by Trey Ideker, Owen Ozier, Benno Schwikowski, Andrew F. Siegel posted to chip2 network p2p reconstruction regulatory signaling by koller on 2006-08-24 06:20:37 as along with 15 people and 2 groups myzhang tmmurali akshayk wilbur arne junehlee cswinburne isimpson yaredo dragonrez okarsligil lfriedl noano frohike carlk kdl Bioinformatics
	Validation and refinement of gene-regulatory pathways on a network of physical interactions. [My Copy] Genome Biol, Vol. 6, No. 7. (2005) by C. H. Yeang, H. C. Mak, S. McCuine, C. Workman, T. Jaakkola, T. Ideker posted to bayesian chip2 p2p reconstruction regulatory transcription by koller on 2006-08-24 06:06:06 as along with 15 people and 1 group frohike kaarsinogen isimpson hplatero snuppepuppan abhik tmmurali textoris wnpx noano ccr cdppublications AlexanderPico carlk jago CDP
	A systems approach to mapping DNA damage response pathways. [My Copy] Science (New York, N.Y.), Vol. 312, No. 5776. (19 May 2006), pp. 1054-1059. by Christopher T. Workman, H. Craig Mak, Scott McCuine, et al.Jean-Bosco B. Tagne, Maya Agarwal, Owen Ozier, Thomas J. Begley, Leona D. Samson, Trey Ideker posted to chip2 cis-regulation dna-repair reconstruction regulatory by koller on 2006-08-24 05:52:47 as along with 10 people frohike nzm arsyed roys isimpson biozhang2001 jfr nirfriedman cconboy tmmurali
	Integrated assessment and prediction of transcription factor binding. [My Copy] PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006) by A. Beyer, C. Workman, J. Hollunder, et al.D. Radke, U. Möller, T. Wilhelm, T. Ideker posted to bayesian chip2 reconstruction regulation transcription by koller on 2006-08-24 05:46:21 as along with 3 people and 1 group nickluscombe aswin mariakmejia EBI-regulation

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