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Recent papers classified by the tag chip_chip.

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	Global MYCN transcription factor binding analysis in neuroblastoma reveals association with distinct E-box motifs and regions of DNA hypermethylation. [My Copy] PloS one In PLoS ONE, Vol. 4, No. 12. (4 December 2009), e8154. by Derek M. Murphy, Patrick G. Buckley, Kenneth Bryan, et al.Sudipto Das, Leah Alcock, Niamh H. Foley, Suzanne Prenter, Isabella Bray, Karen M. Watters, Desmond Higgins, Raymond L. Stallings posted to mycn motif e-box chip_chip by fpattyn to the group Neuroblastoma on 2009-12-07 09:13:45 as along with 1 person Cancerresearch
	BayesPI - a new model to study protein-DNA interactions: a case study of condition-specific protein binding parameters for Yeast transcription factors [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 345. by Junbai Wang, Morigen posted to protein_dna_interaction chip_chip by ashishanand on 2009-10-23 10:12:32 as along with 1 person TRHvidsten
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to software chipsequencing chip_seq chip_chip chip by fpattyn to the group Neuroblastoma on 2009-09-03 17:21:35 as along with 25 people and 2 groups bsamal hzoltan stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson SIMR bioinformatics BenosLab
	Comprehensive identification of Drosophila dorsal-ventral patterning genes using a whole-genome tiling array [My Copy] Proceedings of the National Academy of Sciences, Vol. 103, No. 34. (22 August 2006), pp. 12763-12768. by Frederic Biemar, David A. Nix, Jessica Piel, et al.Brant Peterson, Matthew Ronshaugen, Victor Sementchenko, Ian Bell, Robert J. Manak, Michael S. Levine posted to development dorsal drosophila patterning ventral chip_chip by daveGerrard on 2009-04-22 10:43:46 as along with 2 people and 2 groups Stew emptyhb BergmanLab EisenLab
	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. [My Copy] PLoS biology, Vol. 6, No. 2. (12 February 2008), e27. by X. Y. Li, S. MacArthur, R. Bourgon, et al.D. Nix, D. A. Pollard, V. N. Iyer, A. Hechmer, L. Simirenko, M. Stapleton, C. L. Luengo Hendriks, H. C. Chu, N. Ogawa, W. Inwood, V. Sementchenko, A. Beaton, R. Weiszmann, S. E. Celniker, D. W. Knowles, T. Gingeras, T. P. Speed, M. B. Eisen, M. D. Biggin posted to cis-regulatory_element a_p caudal d_v drosophila giant snail twist chip_chip by daveGerrard on 2009-04-08 15:35:28 as along with 8 people and 1 group gdb kengg maximilianh caseybrown emptyhb brant isimpson Stew BergmanLab
	A core transcriptional network for early mesoderm development in Drosophila melanogaster [My Copy] Genes & Development, Vol. 21, No. 4. (15 February 2007), pp. 436-449. by Thomas Sandmann, Charles Girardot, Marc Brehme, Waraporn Tongprasit, Viktor Stolc, Eileen E. M. Furlong posted to cis-regulatory_element chip_chip curated dorsal_ventral twist by daveGerrard on 2009-03-30 10:09:14 as along with 6 people and 3 groups lp2 brant dpollard kengg gsrats roys BergmanLab EisenLab Plantandetc
	Allele-Specific Chromatin Immunoprecipitation Studies Show Genetic Influence on Chromatin State in Human Genome [My Copy] PLoS Genetics, Vol. 3, No. 5. (1 May 2007), e81. by Mitsutaka Kadota, Howard H. Yang, Nan Hu, et al.Chaoyu Wang, Ying Hu, Philip R. Taylor, Kenneth H. Buetow, Maxwell P. Lee posted to allele-specific chip_chip method by dpollard to the group RockmanLab on 2008-06-27 20:41:20 as
	Transcriptional regulatory code of a eukaryotic genome [My Copy] Nature, Vol. 431, No. 7004. (02 September 2004), pp. 99-104. by Christopher T. Harbison, D. Benjamin Gordon, Tong I. Lee, et al.Nicola J. Rinaldi, Kenzie D. Macisaac, Timothy W. Danford, Nancy M. Hannett, Jean-Bosco Tagne, David B. Reynolds, Jane Yoo, Ezra G. Jennings, Julia Zeitlinger, Dmitry K. Pokholok, Manolis Kellis, P. Alex Rolfe, Ken T. Takusagawa, Eric S. Lander, David K. Gifford, Ernest Fraenkel, Richard A. Young posted to chip_chip cis_regulatory_elements yeast by dpollard to the group EisenLab on 2007-12-04 00:29:15 as along with 29 people and 7 groups viren4388 daveGerrard Dulce talponer wowalz siebert alokm tuck lyongu kaspermunch balicea kt dchughes nirfriedman cmm nickluscombe kengg gespim koller lusk nklee cisevol njcitulike xili03 brant mariakmejia kristallreiner snow_dragon aalibes Bioinformatics FAB-lab G4ID EBI-regulation Plantandetc Genetics-of-Gambling BergmanLab
	Temporal ChIP-on-chip reveals Biniou as a universal regulator of the visceral muscle transcriptional network. [My Copy] Genes Dev, Vol. 21, No. 19. (1 October 2007), pp. 2448-2460. by J. S. Jakobsen, M. Braun, J. Astorga, et al.E. H. Gustafson, T. Sandmann, M. Karzynski, P. Carlsson, E. E. Furlong posted to chip_chip drosophila by dpollard to the group EisenLab on 2007-10-25 02:13:01 as along with 2 people lp2 Stew
	Comparing active and repressed expression states of genes controlled by the Polycomb/Trithorax group proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 104, No. 42. (16 October 2007), pp. 16615-16620. by C. Beisel, A. Buness, I. M. Roustan-Espinosa, et al.B. Koch, S. Schmitt, S. A. Haas, M. Hild, T. Katsuyama, R. Paro posted to chip_chip chromatin_modification drosophila transcription by dpollard to the group EisenLab on 2007-10-25 01:52:45 as
	Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data [My Copy] BMC Bioinformatics, Vol. 8 (03 August 2007), 283. by Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic posted to systems_biology regulatory_network gene_expression chip_chip bayesian by naegele to the group ic4 on 2007-09-04 08:24:10 as along with 3 people bais dquest nklee
	Allele-Specific Chromatin Immunoprecipitation Studies Show Genetic Influence on Chromatin State in Human Genome [My Copy] PLoS Genetics, Vol. 3, No. 5. (1 May 2007), e81. by Mitsutaka Kadota, Howard H. Yang, Nan Hu, et al.Chaoyu Wang, Ying Hu, Philip R. Taylor, Kenneth H. Buetow, Maxwell P. Lee posted to allele-specific chip_chip chromatin by dpollard on 2007-05-31 22:50:04 as along with 1 group EisenLab
	ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos. [My Copy] Nat Protoc, Vol. 1, No. 6. (2006), pp. 2839-2855. by T. Sandmann, J. S. Jakobsen, E. E. Furlong posted to transcription_factor method drosophila chip_chip binding by dpollard to the group EisenLab on 2007-04-09 17:24:28 as along with 1 person johncumbers
	Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo. [My Copy] Genes Dev, Vol. 21, No. 4. (15 February 2007), pp. 385-390. by J. Zeitlinger, R. P. Zinzen, A. Stark, et al.M. Kellis, H. Zhang, R. A. Young, M. Levine posted to ap_x_dv chip_chip drosophila by dpollard on 2007-03-23 01:04:22 as along with 8 people and 3 groups daveGerrard emptyhb kengg johncumbers gsrats ghattem jtomasch Stew BergmanLab EisenLab Plantandetc
	Discovering Motifs in Ranked Lists of DNA Sequences [My Copy] PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39. by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini posted to round_robin pwm prediction motif eisen_journal_club dan_presented chip_chip by dpollard to the group EisenLab on 2007-03-23 00:19:21 as along with 3 people heliopais dquest yevishere
	GAPWM: a genetic algorithm method for optimizing a position weight matrix [My Copy] Bioinformatics In Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1188-1194. by Leping Li, Yu Liang, Robert L. Bass posted to chip_chip prediction pwm by dpollard on 2007-03-22 23:37:15 as along with 6 people and 1 group bsamal yevishere grahamc cjeans ghattem isimpson EisenLab
	High-Resolution Mapping Reveals Links of HP1 with Active and Inactive Chromatin Components [My Copy] PLoS Genet, Vol. 3, No. 3. (2 March 2007), e38. by Elzo de Wit, Frauke Greil, Bas van Steensel posted to chip_chip chromatin drosophila by dpollard on 2007-03-22 23:26:05 as along with 1 person and 1 group elzodw EisenLab

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drosophila	13
allele-specific	4
chromatin	4
method	4
motif	4
prediction	4
pwm	4
bayesian	2
binding	2
chip	2
chip_seq	2
chipsequencing	2
chromatin_modification	2
cis-regulatory_element	2
cis_regulatory_elements	2
dan_presented	2
e-box	2
eisen_journal_club	2
gene_expression	2
mycn	2
regulatory_network	2
round_robin	2
software	2
systems_biology	2
transcription	2
transcription_factor	2
twist	2
yeast	2
a_p	1
ap_x_dv	1
caudal	1
curated	1
d_v	1
development	1
dorsal	1
dorsal_ventral	1
giant	1
patterning	1
protein_dna_interaction	1
snail	1
ventral	1

Tag chip_chip [17 articles] Export Sort

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