Tag chip_seq [21 articles] Export

Recent papers classified by the tag chip_seq.

	Computation for ChIP-seq and RNA-seq studies [My Copy] Nature Methods In Nat Meth, Vol. 6, No. 11s. (15 October 2009), pp. S22-S32. by Shirley Pepke, Barbara Wold, Ali Mortazavi posted to chip_seq chip by Jporci on 2009-11-20 08:11:57 as along with 27 people and 2 groups humburg fenghezi n00c ongenetics urgi pst epigenetics timflutre molnet-mna Vincent_Rouilly guhjy cajunsushi mpizbioinfo stubrown hzoltan robertrentzsch xingxu oannes74 tonamswish inesdesantiago Baschl polivares jwfoley druvus GeeSharpMinor chvlyl heliopais molnet-macs Orengo Group Journal Picks
	ChIP-seq: advantages and challenges of a maturing technology. [My Copy] Nature reviews. Genetics, Vol. 10, No. 10. (08 October 2009), pp. 669-680. by Peter J. Park posted to next_generation_sequencing chip_seq by giovenko on 2009-10-10 13:47:39 as along with 24 people and 6 groups akakak hzoltan dchughes RyuOgawa heliopais inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski humburg reyez qayub fenghezi tonamswish robertrentzsch polivares idonaldson rschulz cvaldes danmaclean Journal picks Orengo Group Journal Picks JLab BergmanLab CTCF Chromatin
	Chromatin poises miRNA- and protein-coding genes for expression. [My Copy] Genome research, Vol. 19, No. 10. (27 October 2009), pp. 1742-1751. by Artem Barski, Raja Jothi, Suresh Cuddapah, et al.Kairong Cui, Tae-Young Y. Roh, Dustin E. Schones, Keji Zhao posted to protein poises mrna mirna expression chromatin chip_seq chip by fpattyn to the group Neuroblastoma on 2009-10-02 00:25:19 as along with 9 people and 1 group tonamswish heliopais samgj polivares megraw inesdesantiago djkt fenghezi idonaldson microRNA
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to peak-finders chip_seq chip-seq by mkiyer on 2009-09-25 15:37:29 as along with 11 people and 4 groups Vincent_Rouilly tonamswish dswan fenghezi inesdesantiago idonaldson polivares druvus stajich humburg rschulz Bioinformatics JLab BergmanLab Mycology
	Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing [My Copy] Nature Methods, Vol. 4, No. 8. (11 June 2007), pp. 651-657. by Gordon Robertson, Martin Hirst, Matthew Bainbridge, et al.Misha Bilenky, Yongjun Zhao, Thomas Zeng, Ghia Euskirchen, Bridget Bernier, Richard Varhol, Allen Delaney, Nina Thiessen, Obi L. Griffith, Ann He, Marco Marra, Michael Snyder, Steven Jones posted to chip_seq by samanthacooper on 2009-09-05 00:02:44 as along with 14 people and 1 group bedo absterga stubrown ewilban1 fpattyn polivares caseybrown guhjy vega kengg ghattem slevy03 dquest raiyar Plantandetc
	ChIP-seq accurately predicts tissue-specific activity of enhancers [My Copy] Nature, Vol. 457, No. 7231. (12 February 2009), pp. 854-858. by Axel Visel, Matthew J. Blow, Zirong Li, et al.Tao Zhang, Jennifer A. Akiyama, Amy Holt, Ingrid Plajzer-Frick, Malak Shoukry, Crystal Wright, Feng Chen, Veena Afzal, Bing Ren, Edward M. Rubin, Len A. Pennacchio posted to chip_seq by samanthacooper on 2009-09-04 23:57:58 as along with 23 people and 2 groups hzoltan tonamswish ewilban1 ashkelon13 isimpson gdb dnewburger jochenG bertelsen oelemento rpatward cajunsushi WanderingAengus absterga provero cassj anphony dpollard caseybrown biomcgary xingxu idonaldson djkt RockmanLab cis-regulatory-evolution
	ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. [My Copy] Methods (San Diego, Calif.), Vol. 48, No. 3. (7 July 2009), pp. 240-248. by Dominic Schmidt, Michael D. Wilson, Christiana Spyrou, Gordon D. Brown, James Hadfield, Duncan T. Odom posted to methods chip_seq by samanthacooper on 2009-09-04 23:55:34 as along with 8 people fpattyn roys guhjy gdb ewilban1 idonaldson rschulz clearbluespring
	Insights from genomic profiling of transcription factors. [My Copy] Nature reviews. Genetics, Vol. 10, No. 9. (11 September 2009), pp. 605-616. by Peggy J. Farnham posted to chip_seq by samanthacooper on 2009-09-04 17:43:16 as along with 19 people and 2 groups provero bsamal heliopais inesdesantiago fenghezi nklee fpattyn druvus frohike stubrown qayub megraw TRHvidsten mkiyer ericrpaquet ilyashl jbhiatt idonaldson danmaclean Journal picks Chinnaiyan Lab
	Integrated Expression Profiling and ChIP-seq Analyses of the Growth Inhibition Response Program of the Androgen Receptor [My Copy] PLoS ONE, Vol. 4, No. 8. (11 August 2009), e6589. by Biaoyang Lin, Jun Wang, Xu Hong, et al.Xiaowei Yan, Daehee Hwang, Ji-Hoon Cho, Danielle Yi, Angelita G. Utleg, Xuefeng Fang, Dustin E. Schones, Keji Zhao, Gilbert S. Omenn, Leroy Hood posted to chip_seq androgen_receptor by samanthacooper on 2009-09-04 17:38:13 as along with 1 person fenghezi
	PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls. [My Copy] Nature biotechnology, Vol. 27, No. 1. (04 January 2009), pp. 66-75. by Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, et al.Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein posted to software chip_seq by fpattyn on 2009-09-03 17:22:18 as along with 19 people and 1 group bedo hzoltan gdb huali ewilban1 fenghezi smiddha jfr bertelsen JeremyZucker cassj inesdesantiago dakelley ghattem abizar polivares idonaldson WanderingAengus guhjy SIMR bioinformatics
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to software chipsequencing chip_seq chip_chip chip by fpattyn to the group Neuroblastoma on 2009-09-03 17:21:35 as along with 25 people and 2 groups bsamal hzoltan stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily cassj bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson SIMR bioinformatics BenosLab
	An HMM approach to genome-wide identification of differential histone modification sites from ChIP-seq data [My Copy] Bioinformatics, Vol. 24, No. 20. (15 October 2008), pp. 2344-2349. by Han Xu, Chia-Lin Wei, Feng Lin, Wing-Kin Sung posted to bioinfo chip_seq histone histone_modification hmm tool by tonamswish on 2009-07-10 21:07:01 as along with 8 people darian mkiyer ewilban1 rschulz polivares caseybrown djkt epigenetics
	A Poisson mixture model to identify changes in RNA polymerase II binding quantity using high-throughput sequencing technology [My Copy] BMC Genomics, Vol. 9, No. Suppl 2. (2008), S23. by Weixing Feng, Yunlong Liu, Jiejun Wu, Kenneth Nephew, Tim Huang, Lang Li posted to bioinfo breast cancer chip_seq pol2 by tonamswish on 2009-07-07 18:53:37 as along with 2 people ewilban1 WanderingAengus
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted to sel chip_seq design ngs by floatingpoint on 2009-02-16 15:43:52 as along with 19 people and 2 groups hzoltan stubrown guhjy gdb tonamswish ewilban1 coela ekotelnikova jfr idonaldson inesdesantiago WanderingAengus vplagnol xwbcn fpattyn mutagenic kengg rschulz ghattem KCL & UCL Bioinformatics SIMR bioinformatics
	Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 523. by David Nix, Samir Courdy, Kenneth Boucher posted to sel chip_seq multiple_comparisons ngs testing by floatingpoint on 2009-02-16 15:43:20 as along with 9 people and 2 groups darian gdb slv23 inesdesantiago ewilban1 WanderingAengus magusina ghattem caseybrown Bioinformatics - CRUK SIMR bioinformatics
	Model-based Analysis of ChIP-Seq (MACS) [My Copy] Genome Biology, Vol. 9, No. 9. (2008), R137. by Yong Zhang, Tao Liu, Clifford Meyer, et al.Jerome Eeckhoute, David Johnson, Bradley Bernstein, Chad Nussbaum, Richard Myers, Myles Brown, Wei Li, X. Shirley Liu posted to chip_seq ngs probability_model by floatingpoint on 2009-02-16 15:42:27 as along with 24 people and 2 groups hzoltan Vincent_Rouilly darian stubrown mkiyer humburg cassj WanderingAengus bryankr jfr rschulz mcm polivares gdb ghattem yadadi djkt stajich mdperry fpattyn bcondon idonaldson caseybrown kengg SIMR bioinformatics Mycology
	ChIP-seq: welcome to the new frontier [My Copy] Nat Meth, Vol. 4, No. 8. (01 August 2007), pp. 613-614. by Elaine R. Mardis posted to chip_seq next_generation_sequencing by giovenko on 2008-12-19 16:32:47 as along with 5 people pradiptaray ewilban1 zhlei sleepingcell slevy03
	Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq data. [My Copy] Nucleic acids research, Vol. 36, No. 16. (6 September 2008), pp. 5221-5231. by R. Jothi, S. Cuddapah, A. Barski, K. Cui, K. Zhao posted to chip_seq by mdperry on 2008-09-24 15:28:24 as along with 10 people tonamswish talponer ewilban1 polivares guhjy mcm Eroslavochka inesdesantiago sebastien_vigneau idonaldson
	Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data [My Copy] Nature Methods, Vol. 5, No. 9. (17 August 2008), pp. 829-834. by Anton Valouev, David S. Johnson, Andreas Sundquist, et al.Catherine Medina, Elizabeth Anton, Serafim Batzoglou, Richard M. Myers, Arend Sidow posted to chip_seq by mdperry on 2008-09-24 15:26:29 as along with 20 people and 1 group bsamal jwfoley ewilban1 nklee bertelsen stajich smiddha clearbluespring WanderingAengus polivares ptrobajo idonaldson gdb megraw kengg alhufton guhjy kjglennie bryankr maximilianh Mycology
	High-resolution profiling of histone methylations in the human genome. [My Copy] Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837. by Artem Barski, Suresh Cuddapah, Kairong Cui, et al.Tae-Young Y. Roh, Dustin E. Schones, Zhibin Wang, Gang Wei, Iouri Chepelev, Keji Zhao posted to chip_seq by giovenko on 2008-09-08 11:11:18 as along with 22 people and 2 groups rsaito darian tonamswish stubrown fpattyn hagechouchin443 absterga ewilban1 suizifish jochenG caseybrown raylim jernst guhjy kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha inesdesantiago dquest JLab Plantandetc
	Whole-genome maps of USF1 and USF2 binding and histone H3 acetylation reveal new aspects of promoter structure and candidate genes for common human disorders [My Copy] Genome Res. (29 January 2008), gr.6880908. by Alvaro Rada-Iglesias, Adam Ameur, Philipp Kapranov, et al.Stefan Enroth, Jan Komorowski, Thomas R. Gingeras, Claes Wadelius posted to chip_seq disease transcription_factor by davfre on 2008-05-07 00:20:17 as along with 2 people Eroslavochka epigenetics

Note: You may cite this page as: http://www.citeulike.org/tag/chip_seq

chip	5
chromatin	4
development	4
tfbs	4
transcription_factor	4
bioinfo	3
histone_modification	3
method	3
ngs	3
software	3
chip_chip	2
chipsequencing	2
disease	2
enhancer	2
epigenetics	2
expression	2
mirna	2
mrna	2
next_generation_sequencing	2
poises	2
protein	2
sel	2
454	1
androgen_receptor	1
bioinformatics	1
bioinformatics_software	1
breast	1
cancer	1
chip-seq	1
design	1
functional_genomics	1
genome_assembly	1
genome_sequencing	1
histone	1
hmm	1
metagenomics	1
methods	1
multiple_comparisons	1
next_gen_sequencing	1
peak-finders	1
pol2	1
probability_model	1
resequencing	1
review	1
rna_seq	1
solexa	1
solid	1
testing	1
tool	1
transcriptomics	1

Tag chip_seq [21 articles] Export

Related Tags