Tag chipchip [29 articles] Export

Recent papers classified by the tag chipchip.

	Distinguishing direct versus indirect transcription factorâDNA interactions [My Copy] Genome Research, Vol. 19, No. 11. (3 November 2009), pp. 2090-2100. by Raluca GordÃ¢n, Alexander J. Hartemink, Martha L. Bulyk posted to chipchip by maximilianh on 2009-08-05 22:04:54 as along with 9 people djkt vingron venancio owhitney tmmurali emptyhb idonaldson jbhiatt frohike
	Yamanaka factors critically regulate the developmental signaling network in mouse embryonic stem cells [My Copy] Cell Res, Vol. 18, No. 12. (0000), pp. 1177-1189. by Xiaosong Liu, Jinyan Huang, Taotao Chen, et al.Ying Wang, Shunmei Xin, Jian Li, Gang Pei, Jiuhong Kang posted to chipchip e14 embryonic factor targets yamanaka by cassj on 2009-05-25 16:27:11 as
	Genome-scale reconstruction of the Lrp regulatory network in Escherichia coli. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (3 December 2008) by Byung-Kwan K. Cho, Christian L L. Barrett, Eric M M. Knight, Young Seoub S. Park, Bernhard Ø O. Palsson posted to chipchip chipseq ecoli gene-regulation transcription-factors by JeremyZucker on 2009-03-05 19:33:07 as along with 2 people cerca gmunson
	An integrated software system for analyzing ChIP-chip and ChIP-seq data. [My Copy] Nature biotechnology, Vol. 26, No. 11. (02 November 2008), pp. 1293-1300. by Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong posted to analysis chipchip chipseq cisgenome by cassj on 2009-02-17 22:35:33 as along with 23 people and 3 groups fpattyn stubrown isimpson huali tonamswish ewilban1 sebastien_vigneau jfr kmdaily bryankr malcook rschulz mcm behindtherabbit psique renatomilani polivares guhjy inesdesantiago pengchy kengg bais idonaldson Neuroblastoma SIMR bioinformatics BenosLab
	A Bayesian Hidden Markov Model for Motif Discovery Through Joint Modeling of Genomic Sequence and ChIP-Chip Data [My Copy] Biometrics, Vol. 9999, No. 9999. (2009) by Jonathan A. L. Gelfond, Mayetri Gupta, Joseph G. Ibrahim posted to chipchip discovery motif by maximilianh on 2009-02-16 11:11:16 as along with 2 people wowalz idonaldson
	Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif. [My Copy] Genome research (25 September 2008) by Yong Cheng, David C C. King, Louis C C. Dore, et al.Xinmin Zhang, Yuepin Zhou, Ying Zhang, Christine M M. Dorman, Demesew Abebe, Swathi A A. Kumar, Francesca Chiaromonte, Webb Miller, Roland D D. Green, Mitchell J J. Weiss, Ross C C. Hardison posted to chipchip chipseq conserved notconserved by maximilianh on 2008-10-07 09:31:26 as
	Transcriptional Regulatory Networks in Saccharomyces cerevisiae [My Copy] Science, Vol. 298, No. 5594. (25 October 2002), pp. 799-804. by Tong I. Lee, Nicola J. Rinaldi, Francois Robert, et al.Duncan T. Odom, Ziv Bar-Joseph, Georg K. Gerber, Nancy M. Hannett, Christopher T. Harbison, Craig M. Thompson, Itamar Simon, Julia Zeitlinger, Ezra G. Jennings, Heather L. Murray, D. Benjamin Gordon, Bing Ren, John J. Wyrick, Jean-Bosco Tagne, Thomas L. Volkert, Ernest Fraenkel, David K. Gifford, Richard A. Young posted to chipchip by dquest on 2008-07-28 23:36:19 as along with 31 people and 2 groups mjoach kmdaily kinop junehlee lillo80 camster snuppepuppan icases forluvoft ggrot alokm opheliav samal sameetmehta cconboy koller jguinney franklin timflutre jpoyatos lusk nklee karfunkel mimulus_99 roys njcitulike brant kristallreiner Borelli Takayuki siebert dbk-lab TNT
	Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. [My Copy] Nature, Vol. 409, No. 6819. (25 January 2001), pp. 533-538. by V. R. Iyer, C. E. Horak, C. S. Scafe, D. Botstein, M. Snyder, P. O. Brown posted to chipchip by dquest on 2008-07-28 23:35:06 as along with 1 person kaarsinogen
	Genome-Wide Location and Function of DNA Binding Proteins [My Copy] Science, Vol. 290, No. 5500. (22 December 2000), pp. 2306-2309. by Bing Ren, Francois Robert, John J. Wyrick, et al.Oscar Aparicio, Ezra G. Jennings, Itamar Simon, Julia Zeitlinger, Jorg Schreiber, Nancy Hannett, Elenita Kanin, Thomas L. Volkert, Christopher J. Wilson, Stephen P. Bell, Richard A. Young posted to chipchip by dquest on 2008-07-28 23:34:01 as along with 8 people aprasad miguel kaarsinogen johncumbers tvdbulck epigenetics yevishere kristallreiner
	Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. [My Copy] Nature genetics, Vol. 28, No. 4. (August 2001), pp. 327-334. by J. D. Lieb, X. Liu, D. Botstein, P. O. Brown posted to chipchip by dquest on 2008-07-28 23:32:59 as
	Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. [My Copy] PLoS biology, Vol. 6, No. 2. (12 February 2008), e27. by X. Y. Li, S. MacArthur, R. Bourgon, et al.D. Nix, D. A. Pollard, V. N. Iyer, A. Hechmer, L. Simirenko, M. Stapleton, C. L. Luengo Hendriks, H. C. Chu, N. Ogawa, W. Inwood, V. Sementchenko, A. Beaton, R. Weiszmann, S. E. Celniker, D. W. Knowles, T. Gingeras, T. P. Speed, M. B. Eisen, M. D. Biggin posted to chipchip coding notconserved by maximilianh on 2008-02-16 17:47:48 as along with 8 people and 1 group gdb daveGerrard kengg caseybrown emptyhb brant isimpson Stew BergmanLab
	High-throughput Biochemical Analysis of in-vivo Location Data Reveals Novel Classes of POU5F1(Oct4)/DNA complexes. [My Copy] Genome Res (22 January 2008) by Dean Tantin, Matt Gemberling, Catherine Callister, Will Fairbrother posted to chipchip discovery enhanceosome motif by maximilianh on 2008-01-25 10:39:53 as along with 2 people caseybrown xingxu
	Genome-Wide Identification of Estrogen Receptor alpha-Binding Sites in Mouse Liver [My Copy] Mol Endocrinol, Vol. 22, No. 1. (1 January 2008), pp. 10-22. by Hui Gao, Susann Falt, Albin Sandelin, Jan-Ake Gustafsson, Karin Dahlman-Wright posted to chipchip er nuclear receptor by yevishere on 2008-01-17 22:19:08 as along with 2 people tonamswish guhjy
	Normalization and experimental design for ChIP-chip data [My Copy] BMC Bioinformatics, Vol. 8 (25 June 2007), 219. by Shouyong Peng, Artyom A. Alekseyenko, Erica Larschan, Mitzi I. Kuroda, Peter J. Park posted to analysis chipchip by yevishere on 2008-01-03 23:58:25 as along with 7 people and 2 groups rschulz siebert guhjy kengg Stew caseybrown baldigroup EisenLab Plantandetc
	MotifCut: regulatory motifs finding with maximum density subgraphs [My Copy] Bioinformatics, Vol. 22, No. 14. (15 July 2006), pp. e150-157. by Eugene Fratkin, Brian T. Naughton, Douglas L. Brutlag, Serafim Batzoglou posted to chipchip hnf4 mining by yevishere on 2008-01-03 23:50:00 as along with 3 people and 1 group pradiptaray wowalz indigoviolet EisenLab
	Getting started in tiling microarray analysis. [My Copy] PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1842-1844. by X. S. Liu posted to chipchip review by yevishere on 2008-01-03 23:44:16 as along with 9 people ashishanand inesdesantiago emptyhb cassj jfr cabbagezs waszak Ayest GeeSharpMinor
	Tissue-specific transcriptional regulation has diverged significantly between human and mouse. [My Copy] Nature genetics, Vol. 39, No. 6. (21 June 2007), pp. 730-732. by Duncan T. Odom, Robin D. Dowell, Elizabeth S. Jacobsen, et al.William Gordon, Timothy W. Danford, Kenzie D. MacIsaac, P. Alexander Rolfe, Caitlin M. Conboy, David K. Gifford, Ernest Fraenkel posted to chipchip hnf4 odom young by yevishere on 2008-01-03 23:12:42 as along with 13 people and 4 groups vingron ajaymalik fenghezi dpollard gpalidwor dchughes cwbrown djkt cjeans maximilianh fpattyn caseybrown gdb EisenLab G4ID Genetics-of-Gambling cis-regulatory-evolution
	Integrating quantitative information from ChIP-chip experiments into motif finding. [My Copy] Biostatistics (28 May 2007) by Heejung Shim, Sündüz Keles posted to chipchip discovery motif by maximilianh on 2007-12-17 12:28:53 as along with 5 people and 1 group sebastien_vigneau bryankr kt kengg nklee Plantandetc
	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted to chipchip solexa by giovanni on 2007-11-26 19:06:51 as along with 23 people and 5 groups daforerog tonamswish ewilban1 aprasad jo_davies aalibes balicea andersbj JeremyZucker aswin kengg cjeans ghattem zwang epigenetics biomcgary george_g cabbagezs Jporci blobbybirdman caseybrown emptyhb dquest Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group
	Learning position weight matrices from sequence and expression data. [My Copy] Comput Syst Bioinformatics Conf, Vol. 6 (2007), pp. 249-260. by X. Chen, L. Guo, Z. Fan, T. Jiang posted to chipchip discovery motif by maximilianh on 2007-10-25 15:08:37 as
	Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila [My Copy] Genome Biology, Vol. 8 (16 August 2007), R167. by Boris Adryan, Gertrud Woerfel, Ian Birch-Machin, et al.Shan Gao, Marie Quick, Lisa Meadows, Steven Russell, Robert White posted to chipchip cns enhancer insulator by maximilianh on 2007-09-26 16:52:07 as
	Mapping of transcription factor binding regions in mammalian cells by ChIP: Comparison of array- and sequencing-based technologies [My Copy] Genome Res., Vol. 17, No. 6. (1 June 2007), pp. 898-909. by Ghia M. Euskirchen, Joel S. Rozowsky, Chia-Lin Wei, et al.Wah H. Lee, Zhengdong D. Zhang, Stephen Hartman, Olof Emanuelsson, Viktor Stolc, Sherman Weissman, Mark B. Gerstein, Yijun Ruan, Michael Snyder posted to chipchip microfluidics by jtaylor on 2007-06-16 00:17:56 as along with 6 people and 4 groups kengg ghattem epigenetics blobbybirdman idonaldson isimpson Bioinformatics Plantandetc UH - Computational Biology BergmanLab
	ChIP-on-chip protocol for genome-wide analysis of transcription factor binding in Drosophila melanogaster embryos. [My Copy] Nat Protoc, Vol. 1, No. 6. (2006), pp. 2839-2855. by T. Sandmann, J. S. Jakobsen, E. E. Furlong posted to chipchip protocol by johncumbers on 2007-05-09 01:35:12 as along with 1 person and 1 group dpollard EisenLab
	Protocol for the fast chromatin immunoprecipitation (ChIP) method. [My Copy] Nat Protoc, Vol. 1, No. 1. (2006), pp. 179-185. by J. D. Nelson, O. Denisenko, K. Bomsztyk posted to chipchip protocols by johncumbers on 2007-05-09 01:34:05 as along with 4 people sandersl sebastien_vigneau uz_labu_laimi kristallreiner
	Chromatin immunoprecipitation and microarray-based analysis of protein location. [My Copy] Nat Protoc, Vol. 1, No. 2. (2006), pp. 729-748. by T. I. Lee, S. E. Johnstone, R. A. Young posted to chipchip protocol by johncumbers on 2007-05-06 22:58:19 as along with 2 people epigenetics guhjy
	Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs [My Copy] Cell, Vol. 116, No. 4. (20 February 2004), pp. 499-509. by Simon Cawley, Stefan Bekiranov, Huck H. Ng, et al.Philipp Kapranov, Edward A. Sekinger, Dione Kampa, Antonio Piccolboni, Victor Sementchenko, Jill Cheng, Alan J. Williams posted to chipchip by johncumbers on 2007-04-28 23:59:57 as along with 2 people haarcuba suizifish
	Novel TRF1/BRF target genes revealed by genome-wide analysis of Drosophila Pol III transcription [My Copy] The EMBO Journal, Vol. aop, No. current. (14 December 2006) by Yoh Isogai, Shinako Takada, Robert Tjian, Sunduz Keles posted to chipchip drosophila by johncumbers on 2007-04-28 14:47:09 as along with 1 person samgj
	Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo. [My Copy] Genes Dev, Vol. 21, No. 4. (15 February 2007), pp. 385-390. by J. Zeitlinger, R. P. Zinzen, A. Stark, et al.M. Kellis, H. Zhang, R. A. Young, M. Levine posted to chipchip by johncumbers on 2007-04-05 22:56:45 as along with 8 people and 3 groups daveGerrard emptyhb dpollard kengg gsrats ghattem jtomasch Stew BergmanLab EisenLab Plantandetc
	Genomic mapping of RNA polymerase II reveals sites of co-transcriptional regulation in human cells. [My Copy] Genome biology, Vol. 6, No. 8. (2005), R64. by Alexander S. Brodsky, Clifford A. Meyer, Ian A. Swinburne, et al.Giles Hall, Benjamin J. Keenan, Xiaole S. Liu, Edward A. Fox, Pamela A. Silver posted to chipchip by johncumbers on 2006-06-21 13:54:23 as along with 2 people and 1 group antonkratz inesdesantiago Bioinformatics

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hnf4	2
notconserved	2
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protocol	2
receptor	2
cisgenome	1
cns	1
coding	1
conserved	1
drosophila	1
e14	1
ecoli	1
embryonic	1
enhanceosome	1
enhancer	1
factor	1
gene-regulation	1
insulator	1
microfluidics	1
mining	1
odom	1
protocols	1
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transcription-factors	1
yamanaka	1
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Tag chipchip [29 articles] Export

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