Tag chromatin-structure [34 articles] Export Sort

Recent papers classified by the tag chromatin-structure.

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	Nucleosome positioning signals in genomic DNA [My Copy] Genome Research, Vol. 17, No. 8. (9 August 2007), pp. 1170-1177. by Heather E. Peckham, Robert E. Thurman, Yutao Fu, et al.John A. Stamatoyannopoulos, William S. Noble, Kevin Struhl, Zhiping Weng posted to yeast svm nucleosomes chromatin-structure by humburg on 2009-11-30 11:53:26 as along with 4 people and 1 group talponer aalibes epigenetics cabbagezs Bioinformatics
	Vernalization requires epigenetic silencing of FLC by histone methylation [My Copy] Nature, Vol. 427, No. 6970. (08 January 2004), pp. 164-167. by Ruth Bastow, Joshua S. Mylne, Clare Lister, Zachary Lippman, Robert A. Martienssen, Caroline Dean posted to epigenetics chromatin-structure arabidopsis by humburg on 2009-09-22 05:24:34 as along with 1 person Happybene
	Genome-wide analysis of Polycomb targets in Drosophila melanogaster [My Copy] Nature Genetics, Vol. 38, No. 6. (28 May 2006), pp. 700-705. by Yuri B. Schwartz, Tatyana G. Kahn, David A. Nix, et al.Xiao-Yong Li, Richard Bourgon, Mark Biggin, Vincenzo Pirrotta posted to chromatin-structure by humburg on 2009-09-22 05:12:05 as along with 5 people farhat caseybrown RMGraze eukfn elzodw
	Polycomb complexes repress developmental regulators in murine embryonic stem cells [My Copy] Nature, Vol. 441, No. 7091. (19 April 2006), pp. 349-353. by Laurie A. Boyer, Kathrin Plath, Julia Zeitlinger, et al.Tobias Brambrink, Lea A. Medeiros, Tong I. Lee, Stuart S. Levine, Marius Wernig, Adriana Tajonar, Mridula K. Ray, George W. Bell, Arie P. Otte, Miguel Vidal, David K. Gifford, Richard A. Young, Rudolf Jaenisch posted to chromatin-structure by humburg on 2009-09-22 05:09:42 as along with 5 people and 1 group tuck cconboy nickluscombe eukfn inesdesantiago EBI-regulation
	BayesPeak: Bayesian analysis of ChIP-seq data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 299. by Christiana Spyrou, Rory Stark, Andy Lynch, Simon Tavare posted to tf hmm high-throughput-sequencing chromatin-structure algorithm by humburg on 2009-09-22 03:36:52 as along with 11 people and 4 groups Vincent_Rouilly tonamswish dswan fenghezi inesdesantiago idonaldson polivares mkiyer druvus stajich rschulz Bioinformatics JLab BergmanLab Mycology
	ChIP-seq: advantages and challenges of a maturing technology [My Copy] Nature Reviews Genetics, Vol. 10, No. 10. (08 September 2009), pp. 669-680. by Peter J. Park posted to tf nucleosomes high-throughput-sequencing chromatin-structure chip-seq by humburg on 2009-09-20 02:56:16 as along with 25 people and 6 groups guhjy akakak hzoltan dchughes RyuOgawa heliopais giovenko inesdesantiago pradiptaray dakelley clearbluespring akundaje rdiaz kimorley leliavski reyez qayub fenghezi tonamswish robertrentzsch polivares idonaldson rschulz cvaldes danmaclean Journal picks Orengo Group Journal Picks JLab BergmanLab CTCF Chromatin
	A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome [My Copy] Genome Research, Vol. 18, No. 7. (12 July 2008), pp. 1073-1083. by Travis N. Mavrich, Ilya P. Ioshikhes, Bryan J. Venters, et al.Cizhong Jiang, Lynn P. Tomsho, Ji Qi, Stephan C. Schuster, Istvan Albert, B. Franklin Pugh posted to nucleosomes high-throughput-sequencing chromatin-structure chip-seq by humburg on 2009-09-10 23:31:09 as along with 7 people hagechouchin443 talponer siebert sonjadaniela vega aalibes gdb
	The logic of chromatin architecture and remodelling at promoters. [My Copy] Nature, Vol. 461, No. 7261. (10 September 2009), pp. 193-198. by Bradley R. Cairns posted to review nucleosomes chromatin-structure by humburg on 2009-09-10 07:34:04 as along with 8 people RyuOgawa hagechouchin443 fenghezi cmzmasek TRHvidsten inesdesantiago rschulz djkt
	Genome-wide Map of Nucleosome Acetylation and Methylation in Yeast [My Copy] Cell, Vol. 122, No. 4. (26 August 2005), pp. 517-527. by Dmitry K. Pokholok, Christopher T. Harbison, Stuart Levine, et al.Megan Cole, Nancy M. Hannett, Tong I. Lee, George W. Bell, Kimberly Walker, P. Alex Rolfe, Elizabeth Herbolsheimer posted to yeast tiling-array nucleosomes microarray chromatin-structure by humburg on 2009-09-01 05:07:21 as along with 6 people and 1 group hagechouchin443 nucleosome kengg koller olympos redfish99213 Plantandetc
	Nucleosome positioning in human HOX gene clusters [My Copy] Genome Research, Vol. 18, No. 10. (22 October 2008), pp. 1554-1561. by Peter V. Kharchenko, Caroline J. Woo, Michael Y. Tolstorukov, Robert E. Kingston, Peter J. Park posted to tiling-array nucleosomes microarray chromatin-structure chip-chip by humburg on 2009-08-28 05:06:31 as along with 2 people inesdesantiago aalibes
	Chromosomal Distribution of PcG Proteins during Drosophila Development [My Copy] PLoS Biol, Vol. 4, No. 6. (20 April 2006), e170. by Nicolas Nègre, Jérôme Hennetin, Ling V. Sun, et al.Sergey Lavrov, Michel Bellis, Kevin P. White, Giacomo Cavalli posted to drosophila chromatin-structure chip-chip by humburg on 2009-08-28 04:54:20 as along with 1 person johncumbers
	Epigenome Microarray Platform for Proteome-Wide Dissection of Chromatin-Signaling Networks [My Copy] PLoS ONE, Vol. 4, No. 8. (26 August 2009), e6789. by Dennis J. Bua, Alex J. Kuo, Peggie Cheung, et al.Chih L. Liu, Valentina Migliori, Alexsandra Espejo, Fabio Casadio, Christian Bassi, Bruno Amati, Mark T. Bedford, Ernesto Guccione, Or Gozani posted to high-throughput chromatin-structure by humburg on 2009-08-27 07:58:50 as
	Impact of Chromatin Structures on DNA Processing for Genomic Analyses [My Copy] PloS one In PLoS ONE, Vol. 4, No. 8. (20 August 2009), e6700. by Leonid Teytelman, Bilge Özaydın, Oliver Zill, et al.Philippe Lefrançois, Michael Snyder, Jasper Rine, Michael B. Eisen posted to high-throughput-sequencing chromatin-structure chip-seq by humburg on 2009-08-27 07:47:47 as along with 6 people and 4 groups farhat inesdesantiago fenghezi lthorrez polivares stajich JLab CTCF BergmanLab Mycology
	Genome-Scale Identification of Nucleosome Positions in S. cerevisiae [My Copy] Science, Vol. 309, No. 5734. (22 July 2005), pp. 626-630. by Guo-Cheng Yuan, Yuen-Jong Liu, Michael F. Dion, et al.Michael D. Slack, Lani F. Wu, Steven J. Altschuler, Oliver J. Rando posted to tiling-array nucleosomes microarray chromatin-structure chip-chip by humburg on 2009-08-26 01:48:47 as along with 8 people hagechouchin443 ilyashl aalibes koller olympos redfish99213 epigenetics elzodw
	A bivalent chromatin structure marks key developmental genes in embryonic stem cells. [My Copy] Cell, Vol. 125, No. 2. (21 April 2006), pp. 315-326. by Bradley E. Bernstein, Tarjei S. Mikkelsen, Xiaohui Xie, et al.Michael Kamal, Dana J. Huebert, James Cuff, Ben Fry, Alex Meissner, Marius Wernig, Kathrin Plath, Rudolf Jaenisch, Alexandre Wagschal, Robert Feil, Stuart L. Schreiber, Eric S. Lander posted to chromatin-structure chip-chip by humburg on 2009-08-24 07:51:50 as along with 6 people kelsic gderwin inesdesantiago tuck olympos jasonflannick
	Translating the Histone Code [My Copy] Science In Science, Vol. 293, No. 5532. (10 August 2001), pp. 1074-1080. by Thomas Jenuwein, C. David Allis posted to chromatin-structure by humburg on 2009-08-24 06:39:09 as along with 3 people Biomedyknight johncumbers olympos
	ACETYLATION AND METHYLATION OF HISTONES AND THEIR POSSIBLE ROLE IN THE REGULATION OF RNA SYNTHESIS. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 51 (May 1964), pp. 786-794. by V. G. Allfrey, R. Faulkner, A. E. Mirsky posted to nucleosomes chromatin-structure by humburg on 2009-08-23 03:53:37 as along with 2 people absterga olympos
	Chromatin structure: a repeating unit of histones and DNA. [My Copy] Science (New York, N.Y.), Vol. 184, No. 139. (24 May 1974), pp. 868-871. by R. D. Kornberg posted to nucleosomes chromatin-structure by humburg on 2009-08-23 02:57:44 as along with 1 person and 1 group skoch3 Koch_Lab
	Distinctive chromatin in human sperm packages genes for embryo development [My Copy] Nature, Vol. 460, No. 7254. (23 July 2009), pp. 473-478. by Saher S. Hammoud, David A. Nix, Haiying Zhang, Jahnvi Purwar, Douglas T. Carrell, Bradley R. Cairns posted to chip-chip chip-seq chromatin-structure high-throughput-sequencing human tiling-array by humburg on 2009-07-22 23:36:23 as along with 6 people absterga jd222 leliavski fenghezi djkt dchughes
	A clustering approach for identification of enriched domains from histone modification ChIP-Seq data [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1952-1958. by Chongzhi Zang, Dustin E. Schones, Chen Zeng, Kairong Cui, Keji Zhao, Weiqun Peng posted to chip-seq chromatin-structure clustering high-throughput-sequencing by humburg on 2009-07-19 23:32:51 as along with 12 people and 2 groups hzoltan hagechouchin443 ashraya stubrown cassj guhjy ewilban1 gdb inesdesantiago fenghezi ghattem polivares SIMR bioinformatics BergmanLab
	Remodeling of the chromatin structure of the facioscapulohumeral muscular dystrophy (FSHD) locus and upregulation of FSHD-related gene 1 (FRG1) expression during human myogenic differentiation [My Copy] BMC Biology, Vol. 7, No. 1. (2009), 41. by Beatrice Bodega, Di Capua Ramirez, Florian Grasser, et al.Stefania Cheli, Silvia Brunelli, Marina Mora, Raffaella Meneveri, Anna Marozzi, Stefan Mueller, Elena Battaglioli, Enrico Ginelli posted to chromatin-structure human polycomb by humburg on 2009-07-17 03:24:50 as
	Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana [My Copy] Genome Biology, Vol. 10, No. 6. (2009), R62. by Xiaoyu Zhang, Yana Bernatavichute, Shawn Cokus, Matteo Pellegrini, Steven Jacobsen posted to arabidopsis chip-chip chromatin-structure tiling-array by humburg on 2009-06-10 07:48:36 as along with 3 people megraw lptolik vinithepooh
	Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes [My Copy] Genome Research, Vol. 19, No. 6. (1 June 2009), pp. 967-977. by Michael Y. Tolstorukov, Peter V. Kharchenko, Joseph A. Goldman, Robert E. Kingston, Peter J. Park posted to chip-seq chromatin-structure high-throughput-sequencing nucleosomes by humburg on 2009-06-01 23:06:48 as along with 3 people ashkelon13 hagechouchin443 idonaldson
	Epigenetics meets next-generation sequencing. [My Copy] Epigenetics : official journal of the DNA Methylation Society, Vol. 3, No. 6. (November 2008), pp. 318-321. by P. J. Park posted to chip-seq chromatin-structure high-throughput-sequencing nucleosomes review by humburg on 2009-05-14 07:17:47 as along with 1 person abizar
	Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. [My Copy] Nature methods, Vol. 6, No. 4. (22 April 2009), pp. 283-289. by Jay R. Hesselberth, Xiaoyu Chen, Zhihong Zhang, et al.Peter J. Sabo, Richard Sandstrom, Alex P. Reynolds, Robert E. Thurman, Shane Neph, Michael S. Kuehn, William S. Noble, Stanley Fields, John A. Stamatoyannopoulos posted to chip-seq chromatin-structure high-throughput-sequencing tf yeast by humburg on 2009-05-04 05:20:46 as along with 8 people absterga inesdesantiago kmdaily emptyhb roys coela fpattyn jbhiatt
	Nucleosome positioning and gene regulation: advances through genomics [My Copy] Nature Reviews Genetics, Vol. 10, No. 3. (01 March 2009), pp. 161-172. by Cizhong Jiang, B. Franklin Pugh posted to chip-seq chromatin-structure nucleosomes high-throughput-sequencing by humburg on 2009-05-04 05:16:58 as along with 13 people and 1 group tonamswish hagechouchin443 talponer fenghezi inesdesantiago rpatward timflutre nilsbecker siebert aalibes idonaldson WanderingAengus provero cube_and_beyond
	Histone modifications at human enhancers reflect global cell-type-specific gene expression. [My Copy] Nature, Vol. 459, No. 7243. (7 May 2009), pp. 108-112. by Nathaniel D. Heintzman, Gary C. Hon, R. David Hawkins, et al.Pouya Kheradpour, Alexander Stark, Lindsey F. Harp, Zhen Ye, Leonard K. Lee, Rhona K. Stuart, Christina W. Ching, Keith A. Ching, Jessica E. Antosiewicz-Bourget, Hui Liu, Xinmin Zhang, Roland D. Green, Victor V. Lobanenkov, Ron Stewart, James A. Thomson, Gregory E. Crawford, Manolis Kellis, Bing Ren posted to chip-chip chromatin-structure tiling-array by humburg on 2009-05-04 02:40:15 as along with 18 people and 2 groups gderwin rpatward akakak suizifish RyuOgawa inesdesantiago gdb djkt tonamswish t08681mn akundaje leliavski scjparker fenghezi TRHvidsten frohike idonaldson sebastien_vigneau Epigenetics CTCF
	Putting chromatin immunoprecipitation into context. [My Copy] Journal of cellular biochemistry, Vol. 107, No. 1. (1 May 2009), pp. 19-29. by Vincent Zecchini, Ian G. Mills posted to chip-chip chromatin-structure regulation tfbs by WanderingAengus on 2009-02-13 20:03:42 as along with 2 people rdowell guhjy
	Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. [My Copy] Genome research, Vol. 16, No. 10. (October 2006), pp. 1299-1309. by Josée Dostie, Todd A. Richmond, Ramy A. Arnaout, et al.Rebecca R. Selzer, William L. Lee, Tracey A. Honan, Eric D. Rubio, Anton Krumm, Justin Lamb, Chad Nusbaum, Roland D. Green, Job Dekker posted to 5c chromatin-structure by WanderingAengus on 2009-01-11 18:02:38 as along with 5 people TorstenWaldminghaus idonaldson polivares elzodw mdimon
	Gene Regulation in the Third Dimension [My Copy] Science, Vol. 319, No. 5871. (28 March 2008), pp. 1793-1794. by Job Dekker posted to chromatin-structure regulation by WanderingAengus on 2009-01-11 18:01:57 as along with 11 people and 3 groups operon AbnerCYH ealloza biomcgary sunhwan dlobo lambda Haze emptyhb inesdesantiago ArtemPankin TranscriptionalRegulationWithThermodynamicModels GEB Khavkin's lab
	Long-range chromosomal interactions and gene regulation. [My Copy] Molecular bioSystems, Vol. 4, No. 11. (November 2008), pp. 1046-1057. by Adriana Miele, Job Dekker posted to chromatin-structure histone-marks regulation by WanderingAengus on 2009-01-11 17:59:22 as along with 1 person Annab
	High-throughput chromatin information enables accurate tissue-specific prediction of transcription factor binding sites. [My Copy] Nucleic acids research, Vol. 37, No. 1. (1 January 2009), pp. 14-25. by Tom Whitington, Andrew C. Perkins, Timothy L. Bailey posted to chromatin-structure comp-bio deep-seq histone-marks tfbs by WanderingAengus on 2009-01-11 17:54:26 as along with 7 people vingron akundaje inesdesantiago polivares lptolik xili03 maximilianh
	Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae [My Copy] Nature, Vol. 438, No. 7066., pp. 379-383. by Toyoko Tsukuda, Alastair B. Fleming, Jac A. Nickoloff, Mary A. Osley posted to chromatin-structure by DNAReplication on 2008-02-02 20:22:22 as along with 1 person and 1 group skoch3 Koch_Lab
	Changes in chromatin structure and mobility in living cells at sites of DNA double-strand breaks. [My Copy] J Cell Biol, Vol. 172, No. 6. (13 March 2006), pp. 823-834. by M. J. Kruhlak, A. Celeste, G. Dellaire, et al.O. Fernandez-Capetillo, W. G. Müller, J. G. McNally, D. P. Bazett-Jones, A. Nussenzweig posted to chromatin-structure by DNAReplication on 2008-02-02 20:06:12 as

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