Tag ciona [35 articles] Export

Recent papers classified by the tag ciona.

	The Draft Genome of Ciona intestinalis: Insights into Chordate and Vertebrate Origins [My Copy] Science, Vol. 298, No. 5601. (13 December 2002), pp. 2157-2167. by Paramvir Dehal, Yutaka Satou, Robert K. Campbell, et al.Jarrod Chapman, Bernard Degnan, Anthony De Tomaso, Brad Davidson, Anna Di Gregorio, Maarten Gelpke, David M. Goodstein, Naoe Harafuji, Kenneth E. Hastings, Isaac Ho, Kohji Hotta, Wayne Huang, Takeshi Kawashima, Patrick Lemaire, Diego Martinez, Ian A. Meinertzhagen, Simona Necula, Masaru Nonaka, Nik Putnam, Sam Rash, Hidetoshi Saiga, Masanobu Satake, Astrid Terry, Lixy Yamada, Hong-Gang Wang, Satoko Awazu, Kaoru Azumi, Jeffrey Boore, Margherita Branno, Stephen Chin-Bow, Rosaria Desantis, Sharon Doyle, Pilar Francino, David N. Keys, Shinobu Haga, Hiroko Hayashi, Kyosuke Hino, Kaoru S. Imai, Kazuo Inaba, Shungo Kano, Kenji Kobayashi, Mari Kobayashi, Byung-In Lee, Kazuhiro W. Makabe, Chitra Manohar, Giorgio Matassi, Monica Medina, Yasuaki Mochizuki, Steve Mount, Tomomi Morishita, Sachiko Miura, Akie Nakayama, Satoko Nishizaka, Hisayo Nomoto, Fumiko Ohta, Kazuko Oishi, Isidore Rigoutsos, Masako Sano, Akane Sasaki, Yasunori Sasakura, Eiichi Shoguchi, Tadasu Shin-I, Antoinetta Spagnuolo, Didier Stainier, Miho M. Suzuki, Olivier Tassy, Naohito Takatori, Miki Tokuoka, Kasumi Yagi, Fumiko Yoshizaki, Shuichi Wada, Cindy Zhang, P. Douglas Hyatt, Frank Larimer, Chris Detter, Norman Doggett, Tijana Glavina, Trevor Hawkins, Paul Richardson, Susan Lucas, Yuji Kohara, Michael Levine, Nori Satoh, Daniel S. Rokhsar posted to chordate-evolution ciona ciona_intestinalis genome-sequence by cmzmasek on 2009-07-02 23:29:16 as along with 5 people and 4 groups taroleo dchughes nickluscombe maximilianh Auger G4ID EBI-regulation Genetics-of-Gambling Dead 60's
	The repertoire of G protein-coupled receptors in the sea-squirt Ciona intestinalis [My Copy] BMC Evolutionary Biology, Vol. 8 (01 May 2008), 129. by N. Kamesh, Gopala K. Aradhyam, Narayanan Manoj posted to ciona gpcr intestinalis by LaetitiaBigot on 2009-06-19 14:50:19 as
	Ciona intestinalis as an emerging model organism: its regeneration under controlled conditions and methodology for egg dechorionation. [My Copy] Journal of Zhejiang University. Science. B, Vol. 7, No. 6. (June 2006), pp. 467-474. by L. P. Liu, J. H. Xiang, B. Dong, P. Natarajan, K. J. Yu, N. E. Cai posted to ciona by maximilianh on 2009-05-10 13:26:50 as
	Gene regulatory networks underlying the compartmentalization of the Ciona central nervous system [My Copy] Development (16 December 2008), dev.026419. by Kaoru S. Imai, Alberto Stolfi, Michael Levine, Yutaka Satou posted to ciona development gene_regulatory_networks nervous_system by cmzmasek on 2008-12-17 18:18:52 as
	A haplome alignment and reference sequence of the highly polymorphic Ciona savignyi genome [My Copy] Genome Biology, Vol. 8 (20 March 2007), R41. by Kerrin S. Small, Michael Brudno, Matthew M. Hill, Arend Sidow posted to ciona shrimp by adijr on 2008-10-30 22:18:22 as along with 3 people dakelley APRegier nhp
	Improved genome assembly and evidence-based global gene model set for the chordate Ciona intestinalis: new insight into intron and operon populations [My Copy] Genome Biology, Vol. 9 (14 October 2008), R152. by Yutaka Satou, Katsuhiko Mineta, Michio Ogasawara, et al.Yasunori Sasakura, Eiichi Shoguchi, Keisuke Ueno, Lixy Yamada, Jun Matsumoto, Jessica Wasserscheid, Ken Dewar, Graham B. Wiley, Simone L. Macmil, Bruce A. Roe, Robert W. Zeller, Kenneth E. M. Hastings, Patrick Lemaire, Erika Lindquist, Toshinori Endo, Kohji Hotta, Kazuo Inaba posted to assembly ciona by caseybrown on 2008-10-23 04:34:40 as along with 4 people mhiromi Glires pengchy dandaman
	Control of intercalation is cell-autonomous in the notochord of Ciona intestinalis. [My Copy] Developmental biology, Vol. 246, No. 2. (15 June 2002), pp. 329-340. by D. N. Keys, M. Levine, R. M. Harland, J. B. Wallingford posted to ciona by Auger on 2008-10-19 15:44:38 as
	The transcription/migration interface in heart precursors of Ciona intestinalis. [My Copy] Science (New York, N.Y.), Vol. 320, No. 5881. (6 June 2008), pp. 1349-1352. by L. Christiaen, B. Davidson, T. Kawashima, et al.W. Powell, H. Nolla, K. Vranizan, M. Levine posted to ciona by Auger on 2008-10-19 15:40:48 as
	Dorsoventral patterning of the vertebrate neural tube is conserved in a protochordate. [My Copy] Development (Cambridge, England), Vol. 124, No. 12. (June 1997), pp. 2335-2344. by J. C. Corbo, A. Erives, A. Di Gregorio, A. Chang, M. Levine posted to ciona by Auger on 2008-10-19 15:29:37 as
	Pattern of substance P- and cholecystokinin-like immunoreactivity during regeneration of the neural complex in the ascidian Ciona intestinalis. [My Copy] The Journal of comparative neurology, Vol. 325, No. 4. (22 November 1992), pp. 572-580. by T. Bollner, P. W. Beesley, M. C. Thorndyke posted to ciona rgn by Auger on 2008-10-11 12:28:20 as
	Regeneration and post-metamorphic development of the central nervous system in the protochordate Ciona intestinalis: a study with monoclonal antibodies. [My Copy] Cell and tissue research, Vol. 279, No. 2. (February 1995), pp. 421-432. by T. Bollner, S. Howalt, M. C. Thorndyke, P. W. Beesley posted to ciona rgn by Auger on 2008-10-11 12:27:34 as
	Encapsulation response of Ciona intestinalis (Ascidiacea) to intratunical erythrocyte injection. I. The inner capsular architecture. [My Copy] Journal of invertebrate pathology, Vol. 67, No. 3. (May 1996), pp. 205-212. by G. de Leo, N. Parrinello, D. Parrinello, G. Cassara, M. A. di Bella posted to ciona rg tunic by Auger on 2008-09-21 11:32:05 as
	Pax gene expression in the developing central nervous system of Ciona intestinalis. [My Copy] Gene expression patterns : GEP, Vol. 3, No. 6. (December 2003), pp. 743-745. by F. Mazet, J. A. Hutt, J. Millard, S. M. Shimeld posted to ciona cns pax by Auger to the group Dead 60's on 2008-08-20 12:44:18 as along with 1 person klo
	Histospecific acetylcholinesterase development in the presumptive muscle cells isolated from 16-cell-stage ascidian embryos with respect to the number of DNA replications. [My Copy] Journal of embryology and experimental morphology, Vol. 87 (June 1985), pp. 1-12. by I. Mita-Miyazawa, S. Ikegami, N. Satoh posted to ciona embryology by Auger to the group Dead 60's on 2008-08-20 10:54:02 as
	Chasing tails in ascidians: developmental insights into the origin and evolution of chordates. [My Copy] Trends in genetics : TIG, Vol. 11, No. 9. (September 1995), pp. 354-359. by N. Satoh, W. R. Jeffery posted to ciona by Auger to the group Dead 60's on 2008-08-20 10:39:37 as
	Induced neural-type differentiation in the cleavage-arrested blastomere isolated from early ascidian embryos. [My Copy] The Journal of physiology, Vol. 427 (August 1990), pp. 603-623. by H. Okado, K. Takahashi posted to ciona by Auger to the group Dead 60's on 2008-05-05 13:16:23 as
	Tunicates and not cephalochordates are the closest living relatives of vertebrates [My Copy] Nature, Vol. 439, No. 7079., pp. 965-968. by Frã©dã©ric Delsuc, Henner Brinkmann, Daniel Chourrout, Hervã© Philippe posted to amphioxus animal-evolution cephalochordates ciona tunicates by cmzmasek on 2008-04-19 02:54:38 as along with 3 people and 1 group aprasad maximilianh Auger Dead 60's
	The timing of eukaryotic evolution: Does a relaxed molecular clock reconcile proteins and fossils? [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 43. (26 October 2004), pp. 15386-15391. by Emmanuel J. P. Douzery, Elizabeth A. Snell, Eric Bapteste, FrÃ©dÃ©ric Delsuc, HervÃ© Philippe posted to ciona phylogeny by maximilianh on 2008-03-14 09:11:53 as along with 3 people lizbiogen cmzmasek dandaman
	Functional Architecture and Evolution of Transcriptional Elements That Drive Gene Coexpression [My Copy] Science, Vol. 317, No. 5844. (14 September 2007), pp. 1557-1560. by Christopher D. Brown, David S. Johnson, Arend Sidow posted to ciona cis-trans cluster cns-differences combination enhanceosome pwm by maximilianh on 2008-02-29 17:27:57 as along with 10 people and 2 groups pradiptaray dpollard djkt joepickrell zwang Garamonfok Stew mimulus_99 cisevol emptyhb EisenLab cis-regulatory-evolution
	De novo discovery of a tissue-specific gene regulatory module in a chordate [My Copy] Genome Res., Vol. 15, No. 10. (1 October 2005), pp. 1315-1324. by David S. Johnson, Qing Zhou, Kasumi Yagi, Nori Satoh, Wing Wong, Arend Sidow posted to application ciona enhancerprediction rennes by maximilianh on 2008-02-29 12:37:06 as along with 1 person maximilianh_otx
	Unraveling genomic regulatory networks in the simple chordate, Ciona intestinalis. [My Copy] Genome Res, Vol. 15, No. 12. (December 2005), pp. 1668-1674. by W. Shi, M. Levine, B. Davidson posted to ciona model-species by maximilianh on 2008-02-29 10:28:17 as
	Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans. [My Copy] Dev Cell, Vol. 6, No. 6. (June 2004), pp. 757-770. by A. S. Wenick, O. Hobert posted to ciona enhancerprediction by maximilianh on 2008-02-29 09:21:58 as along with 4 people and 3 groups thegoose2 tharris ana blobbybirdman C. elegans / WormBase structural_bioinformatics Bioinformatics
	Diploid genome reconstruction of Ciona intestinalis and comparative analysis with Ciona savignyi [My Copy] Genome Res., Vol. 17, No. 7. (2007), pp. 1101-1110. by H. K. Jong, M. S. Waterman, L. M. Li posted to assembly ciona savignyi wgs by nhp on 2008-02-25 23:31:14 as along with 2 people dakelley bpb
	Extreme genomic variation in a natural population [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 13. (27 March 2007), pp. 5698-5703. by Kerrin S. Small, Michael Brudno, Matthew M. Hill, Arend Sidow posted to ciona polymorphism savignyi by nhp on 2008-02-25 23:30:11 as along with 5 people and 1 group qwermish azazello operon balicea adijr Bioinformatics
	Assembly of polymorphic genomes: algorithms and application to Ciona savignyi. [My Copy] Genome Res, Vol. 15, No. 8. (August 2005), pp. 1127-1135. by J. P. Vinson, D. B. Jaffe, K. O'Neill, et al.E. K. Karlsson, N. Stange-Thomann, S. Anderson, J. P. Mesirov, N. Satoh, Y. Satou, C. Nusbaum, B. Birren, J. E. Galagan, E. S. Lander posted to assembly ciona genome savignyi wgs by nhp on 2008-02-25 23:29:23 as along with 5 people and 1 group dakelley adijr jwortman Auger Neeperando Dead 60's
	Neural Tissue in Ascidian Embryos Is Induced by FGF9/16/20, Acting via a Combination of Maternal GATA and Ets Transcription Factors [My Copy] Cell, Vol. 115, No. 5. (26 November 2003), pp. 615-627. by Vincent Bertrand, Clare Hudson, Danielle Caillol, Cornel Popovici, Patrick Lemaire posted to ciona enhancer_function by cwbrown to the group EisenLab on 2007-11-08 00:45:10 as
	Transposon mediated transgenesis in a marine invertebrate chordate: Ciona intestinalis [My Copy] Genome Biology, Vol. 8, No. Suppl 1. (2007) by Yasunori Sasakura, Yuichi Oogai, Terumi Matsuoka, Nori Satoh, Satoko Awazu posted to ciona by maximilianh on 2007-11-07 13:33:50 as along with 1 person Auger
	Characterization of novel GPCR gene coding locus in amphioxus genome: Gene structure, expression, and phylogenetic analysis with implications for its involvement in chemoreception [My Copy] genesis, Vol. 41, No. 2. (2005), pp. 47-57. by Gouki Satoh posted to amphioxis chemosensory ciona genome gpcr receptors by adamsdi on 2007-10-31 17:47:55 as
	The ascidian homolog of the vertebrate homeobox gene Rx is essential for ocellus development and function [My Copy] Differentiation, Vol. 74, No. 5. (June 2006), pp. 222-234. by D'Aniello, Salvatore, D'Aniello, et al. Enrico, Locascio, Annamaria, Memoli, Alessandra, Corrado, Marcella, Russo, Monia Teresa, Aniello, Francesco, Fucci, Laura, Brown, R. Euan, Branno, Margherita posted to ascidian ciona homeobox rx vision by adamsdi on 2007-10-19 18:39:34 as
	High Species Variation within the Repertoire of Trace Amine Receptors [My Copy] Annals of the New York Academy of Sciences, Vol. 1040, No. 1. (2005), pp. 323-327. by D. E. Gloriam, T. K. Bjarnadottir, H. B. Schioth, R. Fredriksson posted to amine ciona danio elegans genome gpcr human insect olfactory receptors by adamsdi on 2007-09-24 19:59:06 as
	The Repertoire of G-Protein-Coupled Receptors in Fully Sequenced Genomes [My Copy] Mol Pharmacol, Vol. 67, No. 5. (1 May 2005), pp. 1414-1425. by Robert Fredriksson, Helgi B. Schioth posted to ciona danio drosophila elegans evolution genome gpcr human mus olfactory receptors by adamsdi on 2007-09-21 16:45:01 as along with 1 person thoakley
	Mitogenomics reveals two cryptic species in Ciona intestinalis [My Copy] Trends in Genetics, Vol. 23, No. 9. (September 2007), pp. 419-422. by Fabio Iannelli, Graziano Pesole, Paolo Sordino, Carmela Gissi posted to tunicate ciona by dchughes to the group G4ID on 2007-08-20 12:19:07 as along with 1 group Genetics-of-Gambling
	A genomewide survey of developmentally relevant genes in Ciona intestinalis [My Copy] Development Genes and Evolution, Vol. 213, No. 5. (1 June 2003), pp. 264-272. by Kyosuke Hino, Yutaka Satou, Kasumi Yagi, Nori Satoh posted to ciona signaling by srfairclough on 2007-04-10 08:29:25 as
	The non-native solitary ascidian Ciona intestinalis (L.) depresses species richness [My Copy] Journal of Experimental Marine Biology and Ecology In Proceedings of the 1st International Invasive Sea Squirt Conference, Vol. 342, No. 1. (26 March 2007), pp. 5-14. by Julia C. Blum, Andrew L. Chang, Marcela Liljesthrom, Michelle E. Schenk, Mia K. Steinberg, Gregory M. Ruiz posted to ascidian ciona community fouling invasive mypubs by ascidiacea on 2007-02-28 04:12:16 as
	Regulatory Blueprint for a Chordate Embryo [My Copy] Science, Vol. 312, No. 5777. (26 May 2006), pp. 1183-1187. by Kaoru S. Imai, Michael Levine, Nori Satoh, Yutaka Satou posted to ciona network transcription by emilyhare on 2006-07-13 01:13:08 as along with 5 people and 3 groups nirfriedman nickluscombe noano dquest Auger EisenLab EBI-regulation Dead 60's

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genome	7
gpcr	5
assembly	4
rgn	4
savignyi	4
evolution	3
genome-sequencing	3
human	3
receptors	3
tunicate	3
wgs	3
ascidian	2
cis-regulation	2
cis-regulatory	2
cns	2
danio	2
elegans	2
embryology	2
enhancer_function	2
enhancerprediction	2
network	2
olfactory	2
pax	2
phylogeny	2
polymorphism	2
regulatory-elements	2
rg	2
tfbs	2
transcription	2
tunic	2
amine	1
amphioxis	1
amphioxus	1
animal-evolution	1
application	1
cardiosporidium	1
cephalochordates	1
chemosensory	1
chordate-evolution	1
ciona_intestinalis	1
cis-trans	1
cluster	1
cns-differences	1
combination	1
community	1
complement	1
development	1
drosophila	1
enhanceosome	1
fouling	1
gene_regulatory_networks	1
genome-sequence	1
genomes	1
homeobox	1
insect	1
intestinalis	1
invasive	1
lectin	1
model-species	1
mus	1
mypubs	1
nervous_system	1
orthologous	1
protease	1
pwm	1
rennes	1
rx	1
shrimp	1
signaling	1
tunicates	1
vision	1

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