Tag cis [59 articles] Export

Recent papers classified by the tag cis.

	Global patterns of cis variation in human cells revealed by high-density allelic expression analysis [My Copy] Nature Genetics, Vol. 41, No. 11. (18 October 2009), pp. 1216-1222. by Bing Ge, Dmitry K. Pokholok, Tony Kwan, et al.Elin Grundberg, Lisanne Morcos, Dominique J. Verlaan, Jennie Le, Vonda Koka, Kevin C. L. Lam, Vincent Gagne, Joana Dias, Rose Hoberman, Alexandre Montpetit, Marie-Michele Joly, Edward J. Harvey, Daniel Sinnett, Patrick Beaulieu, Robert Hamon, Alexandru Graziani, Ken Dewar, Eef Harmsen, Jacek Majewski, Harald H. H. Goring, Anna K. Naumova, Mathieu Blanchette, Kevin L. Gunderson, Tomi Pastinen posted to variant snp expression cis allelic by songpku on 2009-10-30 20:11:58 as along with 10 people and 1 group bpcusack fenghezi gderwin djkt qayub dill2009 zufar psique daforerog vplagnol Journal picks
	Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules. [My Copy] Nature protocols, Vol. 3, No. 10. (18 September 2008), pp. 1578-1588. by Jean-Valery V. Turatsinze, Morgane Thomas-Chollier, Matthieu Defrance, Jacques van Helden posted to tf motif genome cis by druvus on 2009-10-12 17:01:52 as along with 7 people and 1 group kshameer isimpson heliopais fhsantanna polivares idonaldson natstreet BergmanLab
	Accuracy of Conflict-of-Interest Disclosures Reported by Physicians [My Copy] N Engl J Med, Vol. 361, No. 15. (8 October 2009), pp. 1466-1474. by Kanu Okike, Mininder S. Kocher, Erin X. Wei, Charles T. Mehlman, Mohit Bhandari posted to cis by plosmedicine on 2009-10-08 09:54:08 as
	International capital markets and exchange rate stabilization in the CIS [My Copy] Journal of Comparative Economics, Vol. 33, No. 3. (September 2005), pp. 425-440. by G. Schnabl posted to f3 eu erregime er cis b by adriennegret on 2009-09-22 12:35:50 as
	Web-based tools and approaches to study long-range gene regulation in Metazoa [My Copy] Brief Funct Genomic Proteomic (15 July 2009), elp023. by David Fredman, Par G. Engstrom, Boris Lenhard posted to web software regulon cis by druvus on 2009-08-24 08:35:02 as
	Computational methods for the detection of cis-regulatory modules [My Copy] Brief Bioinform, Vol. 10, No. 5. (1 September 2009), pp. 509-524. by Peter Van Loo, Peter Marynen posted to cis module regulatory survey by nklee on 2009-06-26 02:21:14 as along with 5 people and 1 group reyez idonaldson kshameer cisevol druvus BergmanLab
	Endogenous siRNAs Derived from a Pair of Natural cis-Antisense Transcripts Regulate Salt Tolerance in Arabidopsis [My Copy] Cell, Vol. 123, No. 7. (29 December 2005), pp. 1279-1291. by Omar Borsani, Jianhua Zhu, Paul E. Verslues, Ramanjulu Sunkar, Jian-Kang Zhu posted to cis natural sirna by ozyjul on 2009-06-15 10:22:10 as along with 2 people and 1 group cdawson echinotrix GIG
	Economic Relations between the EU and CIS (An Overview) [My Copy] Social Science Research Network Working Paper Series (23 November 2008) by Marek Dabrowski posted to cis eu f1 f2 geopol overview by adriennegret on 2009-06-15 10:10:58 as
	Assessing the Development Gap [My Copy] Social Science Research Network Working Paper Series, Vol. 74/2007 (21 April 2007) by Irina Sinitsina, Alexander Chubrick, Irina Denisova, et al.Vladimir Dubrovskiy, Magdalena Rokicka, Michael Tokmazishvili, Marina Kartseva, Irina Makenbaeva posted to cis convergence data emetr eu history nms o1 o5 p2 by adriennegret on 2009-06-15 10:07:54 as
	Institutional Convergence of CIS Towards European Benchmarks [My Copy] Social Science Research Network Working Paper Series (23 April 2009) by Rainer Schweickert, Inna Melnykovska, Thorsten Drautzburg, Andrea Gawrich posted to p3 cis emetr emu eu f1 f2 f5 instintegr o1 p2 by adriennegret on 2009-06-15 09:56:14 as
	Economic Impact of a Potential Free Trade Agreement (FTA) between the European Union and the Commonwealth of the Independent States [My Copy] Social Science Research Network Working Paper Series (23 April 2009) by Joseph F. Francois, Miriam Manchin posted to cis data emetr eu f1 fta indepstates theory trade by adriennegret on 2009-06-15 09:50:20 as
	Controlling Conflict of Interest -- Proposals from the Institute of Medicine [My Copy] N Engl J Med, Vol. 360, No. 21. (21 May 2009), pp. 2160-2163. by Robert Steinbrook posted to cis editorial nejm by plosmedicine on 2009-05-21 09:40:27 as
	Academia and the company coin [My Copy] Nature Biotechnology, Vol. 27, No. 5., pp. 411-414. by Jim Kling posted to cis by plosmedicine on 2009-05-11 21:00:41 as
	Comparative genomics modeling of the NRSF/REST repressor network: From single conserved sites to genome-wide repertoire [My Copy] Genome Research, Vol. 16, No. 10. (October 2006), pp. 1208-1221. by Ali Mortazavi, Evonne C. Thompson, Sarah T. Garcia, Richard M. Myers, Barbara Wold posted to cis genome by druvus on 2009-04-15 16:20:25 as
	Effects of cis and trans Genetic Ancestry on Gene Expression in African Americans [My Copy] PLoS Genet, Vol. 4, No. 12. (5 December 2008), e1000294. by Alkes L. Price, Nick Patterson, Dustin C. Hancks, et al.Simon Myers, David Reich, Vivian G. Cheung, Richard S. Spielman posted to cis humans trans by JustinCrocker on 2009-04-14 23:56:06 as along with 6 people and 1 group Zephyrus sg45653 xingxu shoshin djkt caseybrown Roswell Cancer Crosstalk
	A Primer on Regression Methods for Decoding cis-Regulatory Logic [My Copy] PLoS Comput Biol, Vol. 5, No. 1. (30 January 2009), e1000269. by Debopriya Das, Matteo Pellegrini, Joe W. Gray posted to cgh cis cnv expression integration regulation review by rdiaz on 2009-03-23 12:05:52 as along with 12 people Zephyrus orzenil daforerog TRHvidsten jfr natstreet druvus Borelli rdowell dolchan xinhe2 WanderingAengus
	Coevolutionary networks of splicing cis-regulatory elements [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18583-18588. by Xinshu Xiao, Zefeng Wang, Minyoung Jang, Christopher B. Burge posted to cis network splicing by druvus on 2009-03-23 08:40:44 as along with 4 people dfdong cjeans oelemento roys
	Network Discovery Pipeline Elucidates Conserved Time-of-Day-Specific cis-Regulatory Modules. [My Copy] PLoS Genet, Vol. 4, No. 2. (1 February 2008) by Todd P P. Michael, Todd C C. Mockler, Ghislain Breton, et al.Connor McEntee, Amanda Byer, Jonathan D D. Trout, Samuel P P. Hazen, Rongkun Shen, Henry D D. Priest, Christopher M M. Sullivan, Scott A A. Givan, Marcelo Yanovsky, Fangxin Hong, Steve A A. Kay, Joanne Chory posted to cis module network by druvus on 2009-03-17 09:14:16 as along with 2 people lptolik natstreet
	Alignment and Prediction of cis-Regulatory Modules Based on a Probabilistic Model of Evolution [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000299. by Xin He, Xu Ling, Saurabh Sinha posted to alignment cis evolution predictions tf by druvus on 2009-03-13 11:59:05 as along with 9 people roys megraw lusk TRHvidsten kieran101 nuin djkt mhamada maximilianh
	Advances in the Discovery of cis-Regulatory Elements [My Copy] Current Bioinformatics, Vol. 1, No. 3. (August 2006), pp. 321-336. by Pan, Youlian posted to cis motif review by druvus on 2009-02-20 16:11:55 as along with 4 people wowalz natstreet nklee csdhwang
	Statistical significance of cis-regulatory modules [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Dustin Schones, Andrew Smith, Michael Zhang posted to cis domain motif software by druvus on 2009-02-10 13:49:43 as along with 10 people and 1 group indigoviolet dpollard dquest sebastien_vigneau shigepong SeungjoonOh GustavoLacerda nklee xili03 sconlan EisenLab
	Evolution of Regulatory Sequences in 12 Drosophila Species [My Copy] PLoS Genet, Vol. 5, No. 1. (January 2009), e1000330. by Jaebum Kim, Xin He, Saurabh Sinha posted to cis cis-regulatory drosophila enhancer evolution by Stew on 2009-01-09 16:01:29 as along with 12 people and 3 groups daveGerrard kevinemamy dpollard caseybrown druvus WanderingAengus JustinCrocker cisevol cajunsushi djkt emptyhb cabbagesofdoom RockmanLab BergmanLab cis-regulatory-evolution
	Mimicking the human ear [My Copy] Signal Processing Magazine, IEEE In Signal Processing Magazine, IEEE, Vol. 15, No. 5. (1998), pp. 101-130. by P. C. Loizou posted to cis cochlear-implant history overview by crazycrissi on 2008-12-15 15:03:55 as along with 1 person bdahl
	MED-EL Cochlear Implants: State of the Art and a Glimpse Into the Future [My Copy] Trends Amplif, Vol. 10, No. 4. (1 December 2006), pp. 201-219. by Ingeborg Hochmair, Peter Nopp, Claude Jolly, et al.Marcus Schmidt, Hansjorg Schosser, Carolyn Garnham, Ilona Anderson posted to cis cochlear-implant overview by crazycrissi on 2008-12-15 14:54:31 as along with 1 person bdahl
	Cochlear implants: a remarkable past and a brilliant future. [My Copy] Hearing research, Vol. 242, No. 1-2. (August 2008), pp. 3-21. by B. S. Wilson, M. F. Dorman posted to cis cochlear-implant history by crazycrissi on 2008-12-15 14:51:02 as
	Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines [My Copy] Nat Genet, Vol. 40, No. 12. (2 December 2008), pp. 1416-1425. by John C. Castle, Chaolin Zhang, Jyoti K. Shah, et al.Amit V. Kulkarni, Auinash Kalsotra, Thomas A. Cooper, Jason M. Johnson posted to 24426 48 alternative and cell cis events expression human in lines of predicted regulation splicing tissues by asg on 2008-12-08 20:17:56 as along with 8 people ericrpaquet fenghezi tanglingfung xingxu pengchy djkt dchughes rschulz
	EVOLUTIONARY BIOLOGY: Deciphering the Genetics of Evolution [My Copy] Science, Vol. 321, No. 5890. (8 August 2008), pp. 760-763. by Elizabeth Pennisi posted to adaptation cis summary by stevanspringer on 2008-09-29 18:49:22 as along with 3 people operon skumagai gulkur
	Regulatory Blueprint for a Chordate Embryo [My Copy] Science, Vol. 312, No. 5777. (26 May 2006), pp. 1183-1187. by Kaoru S. Imai, Michael Levine, Nori Satoh, Yutaka Satou posted to ci cis regulatory by Auger to the group Dead 60's on 2008-08-19 16:22:05 as along with 5 people and 2 groups emilyhare nirfriedman nickluscombe noano dquest EisenLab EBI-regulation
	A modular cis-regulatory system controls isoform-specific pitx expression in ascidian stomodaeum. [My Copy] Dev Biol, Vol. 277, No. 2. (15 January 2005), pp. 557-566. by L. Christiaen, F. Bourrat, J. S. Joly posted to cis pitx regulatory by Auger to the group Dead 60's on 2008-08-19 16:18:34 as along with 2 people maximilianh_otx maximilianh
	A new method, using cis-regulatory control, for blocking embryonic gene expression [My Copy] Developmental Biology, Vol. 318, No. 2. (15 June 2008), pp. 360-365. by Joel Smith, Eric H. Davidson posted to alx cis ets expression pmc promoter sm30 tbr urchin by adamsdi on 2008-06-20 18:24:00 as
	Logic functions of the genomic cis-regulatory code. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 14. (5 April 2005), pp. 4954-4959. by S. Istrail, E. H. Davidson posted to cis regulation by eskay on 2008-05-26 15:47:58 as along with 1 person and 2 groups kengg Bioinformatics Plantandetc
	Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. [My Copy] J Mol Biol, Vol. 296, No. 5. (10 March 2000), pp. 1205-1214. by J. D. Hughes, P. W. Estep, S. Tavazoie, G. M. Church posted to bioinformatics cis elements regulatory search by Auger to the group Dead 60's on 2008-05-05 14:28:43 as along with 5 people and 1 group hge kaspermunch dquest maximilianh dandaman Bioinformatics
	Text-mining assisted regulatory annotation [My Copy] Genome Biology, Vol. 9, No. 2. (2008) by Stein Aerts, Maximilian Haeussler, Steven van Vooren, et al.Obi Griffith, Paco Hulpiau, Steven Jones, Stephen Montgomery, Casey Bergman, The posted to cis haeussler by jsjoly on 2008-04-14 15:02:36 as along with 13 people and 2 groups artaban421 henk-cul daforerog daveGerrard cisevol yas dullhunk maximilianh idonaldson mircea isimpson bpcusack guhjy dbmi-nlp BergmanLab
	Epigenetic regulation and the variability of gene expression [My Copy] Nature Genetics, Vol. 40, No. 2. (29 January 2008), pp. 141-147. by Jung K. Choi, Young-Joon Kim posted to cis epigenetics expression factor gene histone modification trans transcription variability by rschulz on 2008-02-04 09:13:19 as along with 7 people hagechouchin443 Scis0000002 balabu inesdesantiago bootsy epigenetics maralena
	Constructing Common Information Spaces [My Copy] In ECSCW (1997), 81. by Liam J. Bannon, Susanne Bodker posted to articulation boundary cis community objects of practice work by fmarquesfilho on 2008-02-01 14:55:57 as
	Better speech recognition with cochlear implants [My Copy] Nature, Vol. 352, No. 6332. (18 July 1991), pp. 236-238. by Blake S. Wilson, Charles C. Finley, Dewey T. Lawson, Robert D. Wolford, Donald K. Eddington, William M. Rabinowitz posted to and cis cuse envelope by lgp101 on 2007-12-03 14:36:55 as along with 1 person and 1 group carsonr meta-perception
	Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors. [My Copy] Genome Res (5 July 2007) by Daryi Wang, Huang-Mo M. Sung, Tzi-Yuan Y. Wang, et al.Chih-Jen J. Huang, Peggy Yang, Tiffany Chang, Yang-Chao C. Wang, Da-Lun L. Tseng, Jen-Pey P. Wu, Tso-Ching C. Lee, Ming-Che C. Shih, Wen-Hsiung H. Li posted to cis evolution expression trans by emarker on 2007-09-24 08:44:00 as along with 5 people and 3 groups azazello dpollard jwestbrook cisevol emptyhb EisenLab King_Lab cis-regulatory-evolution
	Evolutionary changes in cis and trans gene regulation. [My Copy] Nature, Vol. 430, No. 6995. (1 July 2004), pp. 85-88. by Patricia J. Wittkopp, Belinda K. Haerum, Andrew G. Clark posted to cis evolution expression hybrid trans by emarker on 2007-09-24 08:06:35 as along with 12 people and 2 groups mox ajbattle athma balabu lyongu dpollard balicea tabu adepace emmahe mimulus_99 cisevol EisenLab cis-regulatory-evolution
	Stubb: a program for discovery and analysis of cis-regulatory modules. [My Copy] Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006) by S. Sinha, Y. Liang, E. Siggia posted to regulatory prediction cis by Stew to the group EisenLab on 2007-07-27 22:17:11 as along with 2 people indigoviolet csdhwang
	Analysis in human immunodeficiency virus type 1 vectors of cis-acting sequences that affect gene transfer into human lymphocytes. [My Copy] J Virol, Vol. 68, No. 6. (June 1994), pp. 3888-3895. by C. Parolin, T. Dorfman, G. Palú, H. Göttlinger, J. Sodroski posted to cis gene lentivirus transfer vector by isera on 2007-07-17 22:35:23 as
	Functional conservation of a root hair cell-specific cis-element in angiosperms with different root hair distribution patterns. [My Copy] Plant Cell, Vol. 18, No. 11. (November 2006), pp. 2958-2970. by D. W. Kim, S. H. Lee, S. B. Choi, et al.S. K. Won, Y. K. Heo, M. Cho, Y. I. Park, H. T. Cho posted to cis root-specific by byy on 2007-06-19 06:22:41 as
	Ancient and Recent Positive Selection Transformed Opioid cis-Regulation in Humans. [My Copy] PLoS Biol, Vol. 3, No. 12. (15 November 2005) by Matthew V V. Rockman, Matthew W W. Hahn, Nicole Soranzo, Fritz Zimprich, David B B. Goldstein, Gregory A A. Wray posted to cis evolution genes human neural opioid positive prodynorphin regulation selection by mgaldzic to the group CHIP on 2007-02-14 05:18:01 as along with 10 people and 3 groups provero mbj imouthesmp indigoviolet dpollard Archaeogenetics happy_manatee djkt cisevol jphekman cube_and_beyond EisenLab cis-regulatory-evolution
	Uncoupling Dorsal-mediated activation from Dorsal-mediated repression in the Drosophila embryo. [My Copy] Development (11 October 2006) by Girish S S. Ratnaparkhi, Songtao Jia, Albert J J. Courey posted to cis coactivator cofactor corepression development drosophila embryo grammar linkage by dpollard on 2006-10-18 19:40:09 as along with 1 person and 1 group gsrats EisenLab
	Cis-regulatory variations: A study of SNPs around genes showing cis-linkage in segregating mouse populations [My Copy] BMC Genomics, Vol. 7 (15 September 2006), 235. by Debraj Guhathakurta, Tao Xie, Manish Anand, et al.Stephen W. Edwards, Guoya Li, Susana Wang, Eric E. Schadt posted to cis gene linkage mouse noncoding polymorphism regulation variation by dpollard on 2006-09-30 00:25:03 as along with 4 people and 1 group caseybrown maximilianh adepace natstreet EisenLab
	Evolution of cis elements in the differential expression of two Hoxa2 coparalogous genes in pufferfish (Takifugu rubripes) [My Copy] PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5419-5424. by Stefan Tumpel, Francisco Cambronero, Leanne M. Wiedemann, Robb Krumlauf posted to cis gene hox hoxa2 pufferfish regulation by BioMaxi on 2006-09-25 16:14:53 as along with 2 people and 2 groups emilyhare nickluscombe EisenLab EBI-regulation
	Expression-Guided In Silico Evaluation of Candidate Cis Regulatory Codes for Drosophila Muscle Founder Cells [My Copy] PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e53. by Anthony A. Philippakis, Brian W. Busser, Stephen S. Gisselbrecht, et al.Fangxue S. He, Beatriz Estrada, Alan M. Michelson, Martha L. Bulyk posted to cis eqtl tfbs by ccots on 2006-05-26 18:50:53 as
	Flexible promoter architecture requirements for coactivator recruitment [My Copy] BMC Molecular Biology, Vol. 7, No. 1. (28 April 2006), 16. by Derek Y. Chiang, David A. Nix, Ryan K. Shultzaberger, Audrey P. Gasch, Michael B. Eisen posted to cis crm by postrational on 2006-05-03 14:30:29 as along with 2 people and 1 group JustinCrocker dpollard EisenLab
	Supervised detection of regulatory motifs in DNA sequences. [My Copy] Stat Appl Genet Mol Biol, Vol. 2, No. 1. (2003) by S. Keles, M. J. van der Laan, S. Dudoit, B. Xing, M. B. Eisen posted to cis crm motif_discovery by postrational on 2006-05-03 14:29:15 as along with 1 person dquest
	Control of developmental regulators by polycomb in human embryonic stem cells. [My Copy] Cell, Vol. 125, No. 2. (21 April 2006), pp. 301-313. by T. I. Lee, R. G. Jenner, L. A. Boyer, et al.M. G. Guenther, S. S. Levine, R. M. Kumar, B. Chevalier, S. E. Johnstone, M. F. Cole, K. Isono, H. Koseki, T. Fuchikami, K. Abe, H. L. Murray, J. P. Zucker, B. Yuan, G. W. Bell, E. Herbolsheimer, N. M. Hannett, K. Sun, D. T. Odom, A. P. Otte, T. L. Volkert, D. P. Bartel, D. A. Melton, D. K. Gifford, R. Jaenisch, R. A. Young posted to cis development stem-cells by postrational on 2006-04-26 10:09:46 as along with 5 people and 1 group tuck cconboy nickluscombe Ao_Li2007 inesdesantiago EBI-regulation
	Whole-genome analysis of temporal gene expression during foregut development. [My Copy] PLoS Biol, Vol. 2, No. 11. (November 2004) by J. Gaudet, S. Muttumu, M. Horner, S. E. Mango posted to cis development drosophila by postrational on 2006-04-21 13:34:03 as along with 2 people and 1 group thegoose2 tharris C. elegans / WormBase

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regulatory	11
regulation	8
expression	7
evolution	6
development	5
eu	5
gene	5
review	5
trans	5
cochlear-implant	4
crm	4
drosophila	4
history	4
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motif	4
emetr	3
f1	3
human	3
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overview	3
prediction	3
software	3
bioinformatics	2
ci	2
coactivator	2
cofactor	2
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tf	2
transition	2
variation	2
24426	1
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