Tag coalescent [90 articles] Export

Recent papers classified by the tag coalescent.

	STEM: species tree estimation using maximum likelihood for gene trees under coalescence [My Copy] Bioinformatics, Vol. 25, No. 7. (1 April 2009), pp. 971-973. by Laura S. Kubatko, Bryan C. Carstens, Lacey L. Knowles posted to stem species_trees gene_trees gene_tree coalescent coalescence by lizbiogen on 2009-11-25 15:42:18 as along with 4 people aprasad nuin druvus djkt
	Effective size of the hierarchically structured populations of the agent of malaria: a coalescent-based model [My Copy] Heredity (07 October 2009) by F. Prugnolle, P. Durand, F. Renaud, F. Rousset posted to population malaria coalescent by druvus on 2009-10-07 16:48:03 as
	Is a new and general theory of molecular systematics emerging? [My Copy] Evolution; international journal of organic evolution, Vol. 63, No. 1. (January 2009), pp. 1-19. by Scott V. Edwards posted to phylogeny coalescent by druvus on 2009-09-28 14:57:20 as along with 2 people aprasad nuin
	Gene tree discordance, phylogenetic inference and the multispecies coalescent. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 24, No. 6. (21 June 2009), pp. 332-340. by James H. Degnan, Noah A. Rosenberg posted to phylogeny coalescent by druvus on 2009-09-28 14:56:48 as along with 4 people parnell sameersoi aprasad skembel
	Coalescent methods for estimating phylogenetic trees. [My Copy] Molecular phylogenetics and evolution, Vol. 53, No. 1. (09 October 2009), pp. 320-328. by Liang Liu, Lili Yu, Laura Kubatko, Dennis K. Pearl, Scott V. Edwards posted to phylogeny coalescent by druvus on 2009-09-28 14:56:03 as along with 1 person dposada
	Species Tree Inference by Minimizing Deep Coalescences [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (11 September 2009), e1000501. by Cuong Than, Luay Nakhleh posted to phylogeny coalescent by druvus on 2009-09-11 09:19:01 as along with 6 people and 2 groups parnell qcjones gdb djkt gjuggler ppgardne iSEEM Journal picks
	Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors. [My Copy] Molecular biology and evolution, Vol. 25, No. 9. (September 2008), pp. 1979-1994. by Ralph Burgess, Ziheng Yang posted to population_genetics homo-pan-gorilla coalescent bayesian by aprasad on 2009-08-27 19:31:18 as along with 1 person renewang
	Ancestral Population Genomics: The Coalescent Hidden Markov Model Approach [My Copy] Genetics, Vol. 183, No. 1. (1 September 2009), pp. 259-274. by Julien Y. Dutheil, Ganesh Ganapathy, Asger Hobolth, Thomas Mailund, Marcy K. Uyenoyama, Mikkel H. Schierup posted to lineage_sorting homo-pan-gorilla hmm coalhmm coalescent by aprasad on 2009-08-27 19:23:18 as along with 2 people operon djkt
	Doubts about complex speciation between humans and chimpanzees. [My Copy] Trends in ecology & evolution (Personal edition), Vol. 24, No. 10. (05 October 2009), pp. 533-540. by Daven C. Presgraves, Soojin V. Yi posted to speciation human homo-pan-gorilla evolution coalescent chimp by aprasad on 2009-08-17 15:34:43 as along with 1 person MickElliot
	The coalescent [My Copy] Stochastic Processes and their Applications, Vol. 13, No. 3. (September 1982), pp. 235-248. by J. Kingman posted to coalescent methods population_genetics by aprasad on 2009-06-30 18:44:19 as along with 1 person ilyashl
	Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. [My Copy] Nature reviews. Genetics, Vol. 3, No. 5. (May 2002), pp. 380-390. by Noah A. Rosenberg, Magnus Nordborg posted to coalescent by lizbiogen on 2009-06-30 13:07:52 as along with 3 people tronella ilyashl ArtemPankin
	Statistical inferences in phylogeography. [My Copy] Molecular ecology, Vol. 18, No. 6. (March 2009), pp. 1034-1047. by Rasmus Nielsen, Mark A. Beaumont posted to abc coalescent ncpa nested_clade_phylogeographic_analysis phylogeography by lizbiogen on 2009-06-03 19:54:49 as along with 1 person sameersoi
	CoaSim: A flexible environment for simulating genetic data under coalescent models [My Copy] BMC Bioinformatics, Vol. 6, No. 1. (2005) by Thomas Mailund, Mikkel Schierup, Christian Pedersen, Peter Mechlenborg, Jesper Madsen, Leif Schauser posted to coalescent simulation by druvus on 2009-02-24 11:21:04 as along with 3 people djkt mailund sanchezbuelna
	Extensions of the Coalescent Effective Population Size [My Copy] Genetics, Vol. 181, No. 1. (1 January 2009), pp. 341-345. by John Wakeley, Ori Sargsyan posted to coalescent population by druvus on 2009-02-20 11:54:02 as
	Accurate Computation of Likelihoods in the Coalescent with Recombination via Parsimony. [My Copy] Lecture notes in computer science, Vol. 4955, No. LNBI. (2008), pp. 463-477. by Rune B B. Lyngsø, Yun S S. Song, Jotun Hein posted to coalescent likelihood by druvus on 2009-02-13 09:12:21 as
	MolKin v2.0: A Computer Program for Genetic Analysis of Populations Using Molecular Coancestry Information [My Copy] Journal of Heredity, Vol. 96, No. 6. (November 2005), pp. 718-721. by J. P. Gutierrez, L. J. Royo, I. Alvarez, F. Goyache posted to coalescent genetic software by druvus on 2009-02-03 12:33:14 as
	ESTIMATION OF THE COANCESTRY COEFFICIENT: BASIS FOR A SHORT-TERM GENETIC DISTANCE [My Copy] Genetics, Vol. 105, No. 3. (1 November 1983), pp. 767-779. by John Reynolds, B. S. Weir, Clark C. Cockerham posted to coalescent distance genetic by druvus on 2009-02-03 12:19:54 as
	REJECTOR: Software for Population History Inference from Genetic Data via a Rejection Algorithm [My Copy] Bioinformatics (20 October 2008), btn540. by Matthew J. Jobin, Joanna L. Mountain posted to coalescent software statistics by druvus on 2009-02-03 10:56:14 as along with 2 people aprasad djkt
	Statistics for microsatellite variation based on coalescence. [My Copy] Theoretical population biology, Vol. 50, No. 3. (December 1996), pp. 325-344. by J. K. Pritchard, M. W. Feldman posted to coalescent marker repeat statistics tandem by druvus on 2009-02-02 17:19:24 as along with 1 person sameersoi
	Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach [My Copy] PNAS, Vol. 98, No. 8. (10 April 2001), pp. 4563-4568. by Peter Beerli, Joseph Felsenstein posted to coalescent likelihood population by druvus on 2009-02-02 14:34:10 as along with 4 people and 1 group senseable-urb balicea spavey AaronDarling FAB-lab
	Recombination and Migration of Cryphonectria hypovirus 1 as Inferred From Gene Genealogies and the Coalescent [My Copy] Genetics, Vol. 166, No. 4. (1 April 2004), pp. 1611-1629. by Ignazio Carbone, Yir-Chung Liu, Bradley I. Hillman, Michael G. Milgroom posted to coalescent genetics by druvus on 2009-02-02 11:48:56 as
	Recodon: Coalescent simulation of coding DNA sequences with recombination, migration and demography [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007) by Miguel Arenas, David Posada posted to coalescent sequence software statistics by druvus on 2009-01-30 10:57:40 as along with 3 people ilyashl stajich ryanraaum
	A multi-dimensional coalescent process applied to multi-allelic selection models and migration models. [My Copy] Theoretical population biology, Vol. 39, No. 1. (February 1991), pp. 30-48. by J. Hey posted to coalescent by skembel on 2009-01-27 23:59:39 as
	The Coalescent Process in Models With Selection [My Copy] Genetics, Vol. 120, No. 3. (1 November 1988), pp. 819-829. by N. L. Kaplan, T. Darden, R. R. Hudson posted to coalescent selection by renewang on 2009-01-18 19:02:56 as along with 1 person e3bo
	Postprocessing of Genealogical Trees [My Copy] Genetics, Vol. 177, No. 1. (1 September 2007), pp. 347-358. by Loukia Meligkotsidou, Paul Fearnhead posted to coalescent genealogy by renewang on 2009-01-18 15:00:01 as along with 1 person druvus
	Coalescent-based association mapping and fine mapping of complex trait loci. [My Copy] Genetics, Vol. 169, No. 2. (February 2005), pp. 1071-1092. by Sebastian Zöllner, Jonathan K. Pritchard posted to association coalescent ldmapping by renewang on 2009-01-18 14:46:00 as along with 2 people sameersoi mailund
	The coalescent process and background selection. [My Copy] Philosophical transactions of the Royal Society of London. Series B, Biological sciences, Vol. 349, No. 1327. (29 July 1995), pp. 19-23. by R. R. Hudson, N. L. Kaplan posted to backgroundselection coalescent genealogy selectiondnds by renewang on 2009-01-18 12:29:01 as
	Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities [My Copy] Journal of the Royal Statistical Society: Series A (Statistics in Society), Vol. 166, No. 2. (2003), pp. 155-188. by Ian J. Wilson, Michael E. Weale, David J. Balding posted to coalescent population software by druvus on 2008-12-16 09:33:49 as
	Smooth Skyride through a Rough Skyline: Bayesian Coalescent-Based Inference of Population Dynamics [My Copy] Mol Biol Evol, Vol. 25, No. 7. (1 July 2008), pp. 1459-1471. by Vladimir N. Minin, Erik W. Bloomquist, Marc A. Suchard posted to bayesian coalescent population statistics by druvus on 2008-12-16 09:07:37 as
	Population genetic history of hepatitis C virus 1b infection in China [My Copy] J Gen Virol, Vol. 87, No. 1. (1 January 2006), pp. 73-82. by Tatsunori Nakano, Ling Lu, Yunshao He, Yongshui Fu, Betty H. Robertson, Oliver G. Pybus posted to coalescent populus virus by druvus on 2008-12-16 09:06:34 as
	Investigating the Origin and Spread of Hepatitis C Virus Genotype 5a [My Copy] J. Virol., Vol. 80, No. 9. (1 May 2006), pp. 4220-4226. by Jannick Verbeeck, Piet Maes, Philippe Lemey, et al.Oliver G. Pybus, Elke Wollants, Ernie Song, Frederik Nevens, Johan Fevery, Wayne Delport, Schalk Van der Merwe, Marc Van Ranst posted to coalescent virus by druvus on 2008-12-16 09:04:48 as
	Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences [My Copy] Mol Biol Evol, Vol. 22, No. 5. (1 May 2005), pp. 1185-1192. by A. J. Drummond, A. Rambaut, B. Shapiro, O. G. Pybus posted to coalescent mutation population software by druvus on 2008-12-16 09:00:59 as along with 4 people tronella carpi ryanraaum cstrasser
	Maximum-Likelihood Estimation of Coalescence Times in Genealogical Trees [My Copy] Genetics, Vol. 171, No. 4. (1 December 2005), pp. 2073-2084. by Loukia Meligkotsidou, Paul Fearnhead posted to coalescent likelihood by druvus on 2008-12-10 15:59:19 as along with 1 person echinotrix
	A microbial population-species interface: nested cladistic and coalescent inference with multilocus data. [My Copy] Molecular ecology, Vol. 10, No. 4. (April 2001), pp. 947-964. by I. Carbone, L. M. Kohn posted to bacteria coalescent mvla by druvus on 2008-12-10 15:58:36 as
	Comparing Likelihood and Bayesian Coalescent Estimation of Population Parameters [My Copy] Genetics, Vol. 175, No. 1. (1 January 2007), pp. 155-165. by Mary K. Kuhner, Lucian P. Smith posted to bayesian coalescent likelihood population by druvus on 2008-12-10 14:33:03 as along with 1 person maren
	GENOME: a rapid coalescent-based whole genome simulator. [My Copy] Bioinformatics (25 April 2007) by Liming Liang, Sebastian Zöllner, Gonçalo R R. Abecasis posted to coalescent genome simulation by druvus on 2008-12-10 14:25:58 as along with 4 people and 1 group ilyashl chriswallace ryanraaum renewang Bioinformatics
	Association Mapping and Significance Estimation via the Coalescent [My Copy] The American Journal of Human Genetics (20 November 2008) by G. Kimmel, R. Karp, M. Jordan, E. Halperin posted to association-analysis coalescent by pkonings on 2008-12-09 10:51:15 as along with 1 person ilyashl
	Characterization of reticulate networks based on the coalescent with recombination. [My Copy] Molecular biology and evolution, Vol. 25, No. 12. (December 2008), pp. 2517-2520. by M. Arenas, G. Valiente, D. Posada posted to coalescent evolution networks phylogenetics phylogeny recombination by treangen on 2008-11-21 10:29:39 as
	High-resolution species trees without concatenation [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 14. (3 April 2007), pp. 5936-5941. by Scott V. Edwards, Liang Liu, Dennis K. Pearl posted to algorithm coalescent phylogeny by treangen on 2008-11-20 14:06:33 as along with 8 people and 1 group lizbiogen robfsouza druvus alexeid stevanspringer operon aprasad zwang FAB-lab
	DnaSP, DNA polymorphism analyses by the coalescent and other methods [My Copy] Bioinformatics, Vol. 19, No. 18. (12 December 2003), pp. 2496-2497. by Julio Rozas, Juan C. Sanchez-Delbarrio, Xavier Messeguer, Ricardo Rozas posted to coalescent polymorphism software by druvus on 2008-11-19 16:07:49 as along with 2 people usagi-kirin treangen
	Accuracy of Coalescent Likelihood Estimates: Do We Need More Sites, More Sequences, or More Loci? [My Copy] Molecular Biology and Evolution, Vol. 23, No. 3. (March 2006), pp. 691-700. by Joseph Felsenstein posted to coalescent evolution statistics by druvus on 2008-10-27 12:44:46 as along with 2 people Ayest cvernesi
	Species Trees from Gene Trees: Reconstructing Bayesian Posterior Distributions of a Species Phylogeny Using Estimated Gene Tree Distributions [My Copy] Syst Biol, Vol. 56, No. 3. (1 June 2007), pp. 504-514. by Liang Liu, Dennis K. Pearl posted to algorithm bayesian coalescent phylogeny by druvus on 2008-10-27 09:07:48 as along with 3 people lizbiogen aprasad akifumi
	Bayesian Estimation of the Timing and Severity of a Population Bottleneck from Ancient DNA [My Copy] PLoS Genetics, Vol. 2, No. 4. (1 April 2006), e59. by Yvonne L. Chan, Christian N. Anderson, Elizabeth A. Hadly posted to abc ancient-dna bayesian coalescent by alexeid on 2008-10-20 20:19:51 as along with 3 people djkt ryanraaum Xavier
	A Two-Stage Pruning Algorithm for Likelihood Computation for a Population Tree [My Copy] Genetics (9 September 2008), genetics.107.085753. by Arindam Roychoudhury, Joseph Felsenstein, Elizabeth A. Thompson posted to coalescent gene-tree snp species-tree by alexeid on 2008-10-20 19:47:58 as along with 2 people renewang djkt
	Ancestral Inference in Population Genetics [My Copy] Statistical Science, Vol. 9, No. 3. (1994), pp. 307-319. by R. C. Griffiths, Simon Tavare posted to coalescent by alexeid on 2008-10-20 19:40:45 as along with 2 people pcarbo jmeppley
	BEST: Bayesian estimation of species trees under the coalescent model [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2542-2543. by Liang Liu posted to bayesian coalescent gene-tree phylogenetics species-tree by alexeid on 2008-10-20 19:39:13 as along with 6 people lizbiogen robfsouza AaronDarling gjuggler druvus nuin
	The probability of topological concordance of gene trees and species trees. [My Copy] Theor Popul Biol, Vol. 61, No. 2. (March 2002), pp. 225-247. by N. A. Rosenberg posted to coalescent gene-tree species-tree by alexeid on 2008-10-20 19:23:17 as along with 1 person AaronDarling
	Bayes estimation of species divergence times and ancestral population sizes using DNA sequences from multiple loci. [My Copy] Genetics, Vol. 164, No. 4. (August 2003), pp. 1645-1656. by B. Rannala, Z. Yang posted to bayesian coalescent gene-tree species-tree by alexeid on 2008-10-20 19:17:40 as along with 1 person AaronDarling
	Population growth of human Y chromosomes: a study of Y chromosome microsatellites [My Copy] Mol Biol Evol, Vol. 16, No. 12. (1 December 1999), pp. 1791-1798. by Jk Pritchard, Mt Seielstad, A. Perez-Lezaun, Mw Feldman posted to abc coalescent by alexeid on 2008-10-20 17:10:33 as along with 2 people ryanraaum Xavier
	Estimating mutation parameters, population history and genealogy simultaneously from temporally spaced sequence data. [My Copy] Genetics, Vol. 161, No. 3. (July 2002), pp. 1307-1320. by A. J. Drummond, G. K. Nicholls, A. G. Rodrigo, W. Solomon posted to bayesian coalescent mcmc molecular-clock by alexeid on 2008-10-20 16:55:32 as along with 3 people and 1 group druvus kaspermunch AaronDarling Bioinformatics

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Tag coalescent [90 articles] Export

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