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Tag coevolution [242 articles]

Recent papers classified by the tag coevolution.
  • Allelic Variation within Helicobacter pylori babA and babB
    Infect. Immun., Vol. 69, No. 2. (1 February 2001), pp. 1160-1171.
    by David T Pride, Richard J Meinersmann, Martin J Blaser
    posted to baba coevolution pylori by xingxu on 2008-02-01 19:13:15 as **
  • An African origin for the intimate association between humans and Helicobacter pylori
    Nature, Vol. 445 (22 February 2007), pp. 915-918.
    by Bodo Linz, François Balloux, Yoshan Moodley, Andrea Manica, Hua Liu, Philippe Roumagnac, Daniel Falush, Christiana Stamer, Franck Prugnolle, Schalk W van der Merwe, Yoshio Yamaoka, David Y Graham, Emilio Perez-Trallero, Torkel Wadstrom, Sebastian Suerbaum, Mark Achtman
    posted to coevolution pylori by xingxu on 2008-02-01 19:03:32 as ** along with 4 people and 1 group jyuh oamg brembs Xavier Glimcher_Lab
  • Evolving Defence Strategies by Genetic Programming
    Genetic Programming (2005), pp. 281-290.
    by David Jackson
    posted to genetic_algorithm coevolution by VRadenovic on 2008-02-19 00:41:09 as read along with 1 group DSTO-CAS
  • Dynamics of Co-evolutionary Learning
    (September-JanuaryMarch 1996), pp. 526-534.
    by Hugues Juille, Jordan B Pollack
    edited by Pattie Maes, Maja J Mataric, Jean A Meyer, Jordan Pollack, Stewart W Wilson
    posted to coevolution evolution learning by VRadenovic on 2008-02-19 00:14:09 as read along with 1 group DSTO-CAS
  • Coevolution of host immune defence and parasite-induced mortality: relative spleen size and mortality in altricial birds
    Oikos, Vol. 99, No. 1. (October 2002), pp. 95-100.
    by Anders P Moller, Johannes Erritzoe
    posted to birds coevolution defence immunocompetence immunology mortality parasitology splenosomatic by timothee on 2007-03-30 13:10:33 as read along with 1 person dayjm
  • Specificity in protein interactions and its relationship with sequence diversity and coevolution.
    Proc Natl Acad Sci U S A (27 April 2007)
    by Luke Hakes, Simon CC Lovell, Stephen GG Oliver, David LL Robertson
    posted to coevolution specificity by tale on 2007-05-06 14:35:04 as **** along with 9 people and 2 groups stevanspringer bjorns cjeans zwang Garamonfok cursonivel1 winterschlaefer phoenixzxl chrys FAB-lab cursonivel1
  • A Model-Based Approach for Detecting Coevolving Positions in a Molecule
    Molecular Biology and Evolution, Vol. 22, No. 9. (September 2005), pp. 1919-1928.
    by Julien Dutheil, Tal Pupko, Alain Jean-Marie, Nicolas Galtier
    posted to coevolution evolution by tale on 2007-05-06 14:06:33 as ****
  • Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families.
    Proteins (28 February 2006)
    by Inbal Halperin, Haim Wolfson, Ruth Nussinov
    posted to coevolution by tale on 2007-10-31 10:31:03 as ** along with 6 people bicko gbart ramensky cjeans mingzhi friendpine
  • Assessing Site-Interdependent Phylogenetic Models of Sequence Evolution
    Mol Biol Evol, Vol. 23, No. 9. (1 September 2006), pp. 1762-1775.
    by Nicolas Rodrigue, Herve Philippe, Nicolas Lartillot
    posted to coevolution by tale on 2007-05-10 15:48:21 as ** along with 2 people penka redelings
  • A Dependent-Rates Model and an MCMC-Based Methodology for the Maximum-Likelihood Analysis of Sequences with Overlapping Reading Frames
    Mol Biol Evol, Vol. 18, No. 5. (1 May 2001), pp. 763-776.
    by Anne-Mette K Pedersen, Jens L Jensen
    posted to coevolution by tale on 2007-05-10 15:33:30 as ***
  • In silico two-hybrid system for the selection of physically interacting protein pairs
    Proteins: Structure, Function, and Genetics, Vol. 47, No. 2. (2002), pp. 219-227.
    by Florencio Pazos, Alfonso Valencia
    posted to coevolution by tale on 2007-05-10 11:31:33 as **
  • Sperm-female coevolution in Drosophila.
    Science, Vol. 298, No. 5596. (8 November 2002), pp. 1230-1233.
    by GT Miller, S Pitnick
    posted to coevolution sexual_selection by stevanspringer on 2006-02-10 05:43:32 as ** along with 1 group FAB-lab
  • From the Cover: Mutations in topoisomerase I as a self-resistance mechanism coevolved with the production of the anticancer alkaloid camptothecin in plants
    Proceedings of the National Academy of Sciences, Vol. 105, No. 18. (6 May 2008), pp. 6782-6786.
    by Supaart Sirikantaramas, Mami Yamazaki, Kazuki Saito
    posted to plant coevolution by stevanspringer on 2008-05-06 21:09:51 as **
  • Escalation, retreat, and female indifference as alternative outcomes of sexually antagonistic coevolution.
    Am Nat, Vol. 165 Suppl 5 (May 2005)
    by L Rowe, E Cameron, T Day
    posted to coevolution model sexual_conflict by stevanspringer on 2005-10-26 05:46:53 as ** along with 1 group FAB-lab
  • Shooting darts: co-evolution and counter-adaptation in hermaphroditic snails.
    BMC Evol Biol, Vol. 5, No. 1. (30 March 2005)
    by JM Koene, H Schulenburg
    posted to cheating coevolution by stevanspringer on 2005-10-26 05:44:25 as ** along with 1 group FAB-lab
  • Phylogenetic Methodology for Detecting Protein Interactions
    Mol Biol Evol, Vol. 24, No. 3. (1 March 2007), pp. 650-659.
    by Peter J Waddell, Hirohisa Kishino, Rissa Ota
    posted to coevolution mitochondria statistic by stevanspringer on 2007-04-03 20:53:26 as ** along with 2 people and 1 group zwang tale FAB-lab
  • Evolutionary diversification of TTX-resistant sodium channels in a predator-prey interaction
    Nature, Vol. 434, No. 7034. (07 April 2005), pp. 759-763.
    by Shana L Geffeney, Esther Fujimoto, Edmund Brodie, Edmund Brodie, Peter C Ruben
    posted to adaptation coevolution by stevanspringer on 2005-04-08 00:06:01 as ** along with 1 person and 1 group cjeans FAB-lab
  • A Novel Method for Detecting Intramolecular Coevolution: Adding a Further Dimension to Selective Constraints Analyses
    Genetics, Vol. 173, No. 1. (1 May 2006), pp. 9-23.
    by Mario A Fares, Simon A Travers
    posted to coevolution statistic by stevanspringer on 2006-05-24 19:08:24 as ** along with 5 people and 3 groups operon caporaso breden cjeans tale FAB-lab biomedical-nlp SFUAntibodyResearch
  • Genomic imprinting of two antagonistic loci.
    Proc Biol Sci, Vol. 268, No. 1479. (22 September 2001), pp. 1861-1867.
    by JF Wilkins, D Haig
    posted to coevolution conflict imprinting parent_offspring by stevanspringer on 2005-11-04 17:02:43 as ** along with 1 group FAB-lab
  • Robust signals of coevolution of interacting residues in mammalian proteomes identified by phylogeny-aided structural analysis
    Nature Genetics, Vol. 37, No. 12. (13 November 2005), pp. 1367-1371.
    by Sun S Choi, Weimin Li, Bruce T Lahn
    posted to coevolution protein_structure by stevanspringer on 2006-02-07 05:17:01 as ** along with 2 people and 1 group bicko mingzhi FAB-lab
  • A Mosaic of Chemical Coevolution in a Large Blue Butterfly
    Science, Vol. 319, No. 5859. (4 January 2008), pp. 88-90.
    by David R Nash, Thomas D Als, Roland Maile, Graeme R Jones, Jacobus J Boomsma
    posted to coevolution insect by stevanspringer on 2008-01-07 00:06:36 as **
  • A Model-Based Approach for Detecting Co-evolving Positions in a Molecule.
    Mol Biol Evol (8 June 2005)
    by Julien Dutheil, Tal Pupko, Alain Jean-Marie, Nicolas Galtier
    posted to coevolution ml model by stevanspringer on 2005-08-08 08:41:15 as ** along with 2 people and 1 group RMGraze cjeans FAB-lab
  • Rapid evolution of smell and taste receptor genes during host specialization in Drosophila sechellia.
    Proc Natl Acad Sci U S A (9 March 2007)
    by Carolyn S S McBride
    posted to coevolution drosophila speciation by stajich on 2007-04-06 21:03:41 as ** along with 3 people and 1 group dpollard zwang Stew EisenLab
  • Ancient Tripartite Coevolution in the Attine Ant-Microbe Symbiosis
    Science, Vol. 299, No. 5605. (17 January 2003), pp. 386-388.
    by Cameron R Currie, Bess Wong, Alison E Stuart, Ted R Schultz, Stephen A Rehner, Ulrich G Mueller, Gi-Ho Sung, Joseph W Spatafora, Neil A Straus
    posted to symbiosis mutalism fungi coevolution ant by stajich on 2007-01-26 18:02:46 as *** along with 2 people and 1 group operon cmm FAB-lab
  • Coevolved Crypts and Exocrine Glands Support Mutualistic Bacteria in Fungus-Growing Ants
    Science, Vol. 311, No. 5757. (6 January 2006), pp. 81-83.
    by Cameron R Currie, Michael Poulsen, John Mendenhall, Jacobus J Boomsma, Johan Billen
    posted to symbiosis mutalism fungi coevolution ant by stajich on 2007-01-26 18:02:18 as *** along with 3 people and 1 group jmeppley madhadron cmm FAB-lab
  • A Virus in a Fungus in a Plant: Three-Way Symbiosis Required for Thermal Tolerance
    Science, Vol. 315, No. 5811. (26 January 2007), pp. 513-515.
    by Luis M Marquez, Regina S Redman, Russell J Rodriguez, Marilyn J Roossinck
    posted to virus symbiosis fungi coevolution by stajich on 2007-01-26 18:01:33 as ** along with 1 person dayjm
  • In the Ant's Garden, Fungal Parasites Are Closely Matched to Their Fungal Hosts
    PLoS Biology, Vol. 4, No. 8. (1 August 2006), e259.
    by Richard Robinson
    posted to symbiosis mutalism fungi coevolution ant by stajich on 2007-01-26 18:01:27 as ***
  • Coevolution of Machines and Tapes
    (1995), pp. 234-245.
    by Takashi Ikegami, Takashi Hashimoto
    posted to coevolution by soramame_0518 on 2007-07-17 04:42:31 as ***
  • Co-evolution and co-adaptation in protein networks
    FEBS Letters, Vol. In Press, Uncorrected Proof
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to coevolution by smgomez on 2008-03-24 19:32:27 as read along with 2 people and 1 group zwang phoenixzxl GomezLab
  • An empirical test of the concomitantly variable codon hypothesis
    PNAS (19 June 2007), 0701900104.
    by Lauren M Merlo, Mark Lunzer, Antony M Dean
    posted to codon coevolution evolution by sebastien_vigneau on 2007-07-12 15:02:51 as ** along with 2 people Retchless cjeans
  • Nonequilibrium phase transition in the coevolution of networks and opinions
    (9 Mar 2006)
    by Petter Holme, MEJ Newman
    posted to coevolution nonequilibrium opinions social-systems socioeconophysics by Scis0000002 on 2007-06-30 13:11:25 as ** along with 2 people trunov adriandefroment
  • Coevolutionary games on networks
    Phys. Rev. E, Vol. 66, No. 5. (November 2002), 056118.
    by H Ebel, S Bornholdt
    posted to coevolution games networks by Scis0000002 on 2007-07-02 14:46:22 as **
  • Frontiers of finance: Evolution and efficient markets
    (1999)
    by J Farmer, A Lo
    posted to coevolution economics hyper-economy market metaevolution quantitative rationality by scis0000001 on 2007-02-18 14:05:39 as ** along with 1 person jheuer
  • Evolutionary Fabrication: The Co-Evolution of Form and Formation
    by John Rieffel
    posted to coevolution formation reactive self-assembly synthesis by scis0000001 on 2006-09-19 15:20:13 as ** along with 1 person jonana
  • Cooperative Coevolution: An Architecture for Evolving Coadapted Subcomponents
    Evolutionary Computation, Vol. 8, No. 1. (2000), pp. 1-29.
    by Mitchell A Potter, Kenneth A De Jong
    posted to coevolution by scis0000001 on 2006-09-19 14:55:49 as **
  • Maintaining Genetic Diversity in Genetic Algorithms through Co-evolution
    (1998), pp. 128-138.
    by Jason Morrison, Franz Oppacher
    posted to coevolution exploration_explotation gas by santi515 on 2008-03-04 11:38:25 as **
  • Coevolutionary patterns in cytochrome C oxidase subunit I depend on structural and functional context.
    J Mol Evol, Vol. 65, No. 5. (November 2007), pp. 485-495.
    by ZO Wang, DD Pollock
    posted to c coevolution cytochrome oxidase by rrhudson on 2007-12-04 23:42:45 as *** along with 1 person mingzhi
  • The Design and Analysis of a Computational Model of Cooperative Coevolution
    (1997)
    by Mitchell A Potter
    posted to coevolution modularity by RobMills on 2007-05-25 11:40:50 as **
  • Using information theory to search for co-evolving residues in proteins.
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4116-4124.
    by LC Martin, GB Gloor, SD Dunn, LM Wahl
    posted to interactions information_theory coevolution by rabio on 2007-01-30 14:48:40 as ** along with 4 people and 1 group bioinfo caporaso rsantana cjeans biomedical-nlp
  • A mathematical framework for the study of coevolution
    (2003)
    by A Bucci, J Pollack
    posted to coevolution theory by pchiusano on 2006-03-07 17:55:30 as read along with 2 people cjeans chrys
  • Why Co-Evolution Beats Temporal Difference Learning at Backgammon for a Linear Architecture, but not a Non-Linear Architecture
    (FebruaryJuly-March0 2001), pp. 1003-1010.
    by Paul J Darwen
    posted to backgammon coevolution hill_climbing td-learning by pchiusano on 2006-02-21 19:12:02 as **
  • Co-Evolution in the Successful Learning of Backgammon Strategy
    Machine Learning, Vol. 32, No. 1. (1998), pp. 225-240.
    by Jordan B Pollack, Alan D Blair
    posted to backgammon coevolution hill_climbing by pchiusano on 2006-02-21 19:09:49 as read
  • Using evolutionary Expectation Maximization to estimate indel rates.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2294-2300.
    by I Holmes
    posted to coevolution by nirfriedman on 2007-10-31 21:46:22 as ** along with 1 person aprasad
  • A gamma mixture model better accounts for among site rate heterogeneity.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by I Mayrose, N Friedman, T Pupko
    posted to coevolution by nirfriedman on 2007-10-31 21:43:59 as **
  • Evolutionary information for specifying a protein fold
    Nature, Vol. 437, No. 7058., pp. 512-518.
    by Michael Socolich, Steve W Lockless, William P Russ, Heather Lee, Kevin H Gardner, Rama Ranganathan
    posted to coevolution by nirfriedman on 2006-03-15 23:54:53 as ** along with 14 people and 5 groups ana barry lna bpb Einat balajis marcius gbart analogAI caporaso massivemayhem mingzhi bethbromley ca3295 structural_bioinformatics Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
  • Distribution and intensity of constraint in mammalian genomic sequence.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 901-913.
    by GM Cooper, EA Stone, G Asimenos, ED Green, S Batzoglou, A Sidow
    posted to coevolution by nirfriedman on 2007-10-31 20:32:30 as ** along with 5 people operon aprasad JeffR100 Garamonfok tale
  • Inference of functional regions in proteins by quantification of evolutionary constraints.
    Proc Natl Acad Sci U S A, Vol. 99, No. 5. (5 March 2002), pp. 2912-2917.
    by AL Simon, EA Stone, A Sidow
    posted to coevolution by nirfriedman on 2007-10-31 20:27:02 as ** along with 1 person tale
  • Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations?
    Protein Eng, Vol. 7, No. 3. (March 1994), pp. 349-358.
    by IN Shindyalov, NA Kolchanov, C Sander
    posted to coevolution by nirfriedman on 2007-10-31 10:06:48 as ** along with 1 person gbart
  • Phosphotransfer profiling: systematic mapping of two-component signal transduction pathways and phosphorelays.
    Methods Enzymol, Vol. 423 (2007), pp. 531-548.
    by MT Laub, EG Biondi, JM Skerker
    posted to coevolution by nirfriedman on 2007-11-01 07:13:44 as **
  • Coevolving protein residues: maximum likelihood identification and relationship to structure.
    J Mol Biol, Vol. 287, No. 1. (19 March 1999), pp. 187-198.
    by DD Pollock, WR Taylor, N Goldman
    posted to coevolution by nirfriedman on 2007-10-30 20:20:26 as **
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