Tag coevolution [at least 200 articles] Export

Recent papers classified by the tag coevolution.

	Integration of evolutionary features for the identification of functionally important residues in major facilitator superfamily transporters. [My Copy] PLoS computational biology, Vol. 5, No. 10. (2 October 2009), e1000522. by Jouhyun Jeon, Jae-Seong S. Yang, Sanguk Kim posted to coevolution by dfdong on 2009-11-23 08:49:15 as along with 2 people and 2 groups barriot barry structural_bioinformatics Bioinformatics
	Enhancing the prediction of protein pairings between interacting families using orthology information [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008), 35. by Jose Izarzugaza, David Juan, Carles Pons, Florencio Pazos, Alfonso Valencia posted to ppi coevolution by dfdong on 2009-11-23 08:47:32 as along with 3 people biomcgary chad_davis neils
	Graphical models of protein-protein interaction specificity from correlated mutations and interaction data [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2 February 2009), pp. 911-929. by John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg posted to ppi coevolution by dfdong on 2009-11-23 08:46:25 as along with 5 people and 2 groups sobolevnrm AliC qluo RebeccaHamer barry Orengo Group Journal Picks baker-group
	Predicting protein interaction interfaces from protein sequences: Case studies of subtilisin and phycocyanin [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 3. (2008), pp. 1461-1474. by Bin-Bin Xie, Xiu-Lan Chen, Xi-Ying Zhang, Hai-Lun He, Yu-Zhong Zhang, Bai-Cheng Zhou posted to window coevolution by dfdong on 2009-11-23 08:42:32 as along with 1 person bicko
	Structure, function, and evolution of transient and obligate proteinâprotein interactions [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 31. (2 August 2005), pp. 10930-10935. by Julian Mintseris, Zhiping Weng posted to docking complex coevolution coevoluion_interface by dfdong on 2009-11-23 08:11:28 as along with 12 people and 3 groups timg mgomes barry bjorns wiehe julianm bicko chad_davis cjeans Evangelia marti higueruelo structural_bioinformatics ZLAB Bioinformatics
	Mutual Information in Protein Multiple Sequence Alignments Reveals Two Classes of Coevolving Positions† [My Copy] Biochemistry, Vol. 44, No. 19. (1 May 2005), pp. 7156-7165. by Gregory B. Gloor, Louise C. Martin, Lindi M. Wahl, Stanley D. Dunn posted to coevolution by dfdong on 2009-11-23 07:45:26 as along with 3 people jengeldk LeightonP nirfriedman
	Constraints on the Coevolution of Bacteria and Virulent Phage: A Model, Some Experiments, and Predictions for Natural Communities [My Copy] The American Naturalist, Vol. 125, No. 4. (1985), pp. 585-602. by Richard E. Lenski, Bruce R. Levin posted to theory model coevolution bacterium bacteriophages by timothee-poisot on 2009-11-18 23:18:56 as
	Rewiring the specificity of two-component signal transduction systems. [My Copy] Cell, Vol. 133, No. 6. (13 June 2008), pp. 1043-1054. by Jeffrey M. Skerker, Barrett S. Perchuk, Albert Siryaporn, et al.Emma A. Lubin, Orr Ashenberg, Mark Goulian, Michael T. Laub posted to coevolution by dfdong on 2009-11-18 09:22:47 as along with 5 people mgomes robfsouza RebeccaHamer jjray friendpine
	Coevolutionary networks of splicing cis-regulatory elements [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18583-18588. by Xinshu Xiao, Zefeng Wang, Minyoung Jang, Christopher B. Burge posted to window coevolution by dfdong on 2009-11-18 02:40:12 as along with 4 people druvus cjeans oelemento roys
	Grid Coevolution for Adaptive Simulations: Application to the Building of Opening Books in the Game of Go [My Copy] Applications of Evolutionary Computing (2009), pp. 323-332. by Pierre Audouard, Guillaume Chaslot, Jean-Baptiste Hoock, Julien Perez, Arpad Rimmel, Olivier Teytaud posted to opening_books monte-carlo mcts go coevolution by PeterDrake to the group computer-go on 2009-11-17 05:06:08 as
	Regional covariation and its application for predicting protein contact patches [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2009), NA. by YongBai Xu, Elisabeth R. M. Tillier posted to window patch coevolution by dfdong on 2009-11-16 07:10:32 as
	Molecular Coevolution and the Three-Dimensionality of Natural Selection [My Copy] Evolutionary Biology (2009), pp. 237-251. by Mario A. Fares, Christina Toft posted to review coevolution by dfdong on 2009-11-16 07:09:53 as
	A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence. [My Copy] PLoS computational biology, Vol. 5, No. 9. (4 September 2009), e1000488. by Julie Baussand, Alessandra Carbone posted to tree_path coevolution by dfdong on 2009-11-06 08:39:35 as along with 6 people and 1 group anuragsethi sobolevnrm phoenixzxl maren barry zwang Bioinformatics
	The human protein coevolution network. [My Copy] Genome research, Vol. 19, No. 10. (20 October 2009), pp. 1861-1871. by Elisabeth R. Tillier, Robert L. Charlebois posted to sequence_weighting ppi coevolution by dfdong on 2009-11-06 08:33:01 as along with 7 people Garamonfok venancio jperkins TRHvidsten djkt phoenixzxl tmmurali
	Sexual Conflict and Sexually Antagonistic Coevolution in an Annual Plant [My Copy] PLoS ONE, Vol. 4, No. 5. (7 May 2009), e5477. by Josefin A. Madjidian, Åsa Lankinen posted to sex plant coevolution antagonist by tomhebbron on 2009-11-04 21:11:46 as
	An evolutionarily conserved network of amino acids mediates gating in voltage-dependent potassium channels. [My Copy] Journal of molecular biology, Vol. 340, No. 2. (2 July 2004), pp. 307-318. by Sarel J. Fleishman, Ofer Yifrach, Nir Ben-Tal posted to tree_path predict coevolution by dfdong on 2009-11-04 08:10:19 as along with 3 people qluo cjeans mingzhi
	A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction. [My Copy] Proteins, Vol. 67, No. 1. (1 April 2007), pp. 142-153. by E. Eyal, M. Frenkel-Morgenstern, V. Sobolev, S. Pietrokovski posted to sequence_weighting coevolution aagrouping aacontact by dfdong on 2009-11-04 03:29:38 as along with 5 people qluo RebeccaHamer bicko cjeans Lombardo_7
	Detecting coevolution without phylogenetic trees? Tree-ignorant metrics of coevolution perform as well as tree-aware metrics [My Copy] BMC Evolutionary Biology, Vol. 8, No. 1. (03 December 2008), 327. by J. Gregory Caporaso, Sandra Smit, Brett Easton, Lawrence Hunter, Gavin Huttley, Rob Knight posted to sequence_weighting predict coevolution by dfdong on 2009-11-04 03:26:15 as along with 4 people and 1 group mgomes qluo sjcockell djkt iSEEM
	Detecting compensatory covariation signals in protein evolution using reconstructed ancestral sequences. [My Copy] Journal of molecular biology, Vol. 319, No. 3. (7 June 2002), pp. 729-743. by K. Fukami-Kobayashi, D. R. Schreiber, S. A. Benner posted to tree_path predict coevolution by dfdong on 2009-11-04 03:25:40 as along with 3 people chica qluo ramensky
	In silico two-hybrid system for the selection of physically interacting protein pairs [My Copy] Proteins: Structure, Function, and Genetics, Vol. 47, No. 2. (2002), pp. 219-227. by Florencio Pazos, Alfonso Valencia posted to predict ppi coevolution by dfdong on 2009-11-04 03:24:54 as along with 3 people qluo Robinder tale
	Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221. by Anthony A. Fodor, Richard W. Aldrich posted to coevolution analysis by dfdong on 2009-11-04 03:23:55 as along with 10 people and 2 groups mgomes qluo RebeccaHamer ana gbart cjeans jlh64 mingzhi dgront Lombardo_7 structural_bioinformatics Bioinformatics
	ISIS: interaction sites identified from sequence. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 2. (15 January 2007), pp. e13-16. by Yanay Ofran, Burkhard Rost posted to predict docking coevolution by dfdong on 2009-11-04 03:23:25 as along with 2 people bicko qluo
	Prediction of interface residues in protein-protein complexes by a consensus neural network method: test against NMR data. [My Copy] Proteins. , Vol. 61, No. 1. (1 October 2005), pp. 21-35. by H. Chen, H. X. Zhou posted to predict ml docking complex coevolution by dfdong on 2009-11-04 03:23:02 as along with 2 people qluo karbak
	Prediction of Protein-Protein Interface Residues Using Sequence Neighborhood and Surface Properties [My Copy] Advances in Neural Networks - ISNN 2006 (2006), pp. 660-666. by Yasir Arafat, Joarder Kamruzzaman, Gour Karmakar posted to window predict complex coevolution by dfdong on 2009-11-04 03:22:03 as along with 1 person qluo
	Robust signals of coevolution of interacting residues in mammalian proteomes identified by phylogeny-aided structural analysis. [My Copy] Nature genetics, Vol. 37, No. 12. (13 December 2005), pp. 1367-1371. by Sun Shim S. Choi, Weimin Li, Bruce T. Lahn posted to contact coevolution analysis by dfdong on 2009-11-04 02:12:24 as along with 3 people and 1 group stevanspringer bicko mingzhi FAB-lab
	Coevolution of economic and ecological systems [My Copy] Journal of Evolutionary Economics, Vol. 18, No. 1. (1 February 2008), pp. 1-29. by Joëlle Noailly posted to economic ecology coevolution business by tomhebbron on 2009-11-03 20:05:25 as
	When is it coevolution? [My Copy] Ecological Economics, Vol. 62, No. 1. (01 April 2007), pp. 1-6. by Giorgos Kallis posted to review lock-in evolutionary-dynamics coevolution business by tomhebbron on 2009-11-03 20:04:50 as
	Inverse‐Gene‐for‐Gene Infection Genetics and Coevolutionary Dynamics. [My Copy] The American Naturalist, Vol. 174, No. 6. (1 December 2009), pp. E230-E242. by Andrew Fenton, Janis Antonovics, Michael A. Brockhurst posted to read model host-parasite gene-for-gene coevolution by maren on 2009-11-03 20:04:05 as
	Capabilities for coevolutionary contingency [My Copy] Management of Convergence in Innovation (2008), pp. 107-163. posted to lock-in contingency coevolution business by tomhebbron on 2009-11-03 20:02:34 as
	The Coevolutionary Process [My Copy] (15 November 1994) by John N. Thompson posted to coevolution by tomhebbron on 2009-11-03 13:53:47 as
	A no-free-lunch framework for coevolution [My Copy] In GECCO '08: Proceedings of the 10th annual conference on Genetic and evolutionary computation (2008), pp. 371-378. by Travis C. Service, Daniel R. Tauritz posted to optimisation no-free-lunch coevolution by tomhebbron on 2009-11-03 10:06:36 as
	Host-Parasite Relations and Random Zero-Sum Games: The Stabilizing Effect of Strategy Diversification [My Copy] The American Naturalist, Vol. 133, No. 4. (1989), pp. 533-552. by Joel E. Cohen, Charles M. Newman posted to model immune host-parasite game-theory coevolution by tomhebbron on 2009-11-02 17:09:08 as
	Coevolution at protein complex interfaces can be detected by the complementarity trace with important impact for predictive docking [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 22. (3 June 2008), pp. 7708-7713. by Hocine Madaoui, RaphaÃ«l Guerois posted to docking complex coevolution by dfdong on 2009-11-02 06:46:19 as along with 8 people qluo robfsouza RebeccaHamer orr cabbagesofdoom phoenixzxl bicko zwang
	Culture-gene coevolution of individualism-collectivism and the serotonin transporter gene [My Copy] Proceedings of the Royal Society B: Biological Sciences (28 October 2009) by Joan Y. Chiao, Katherine D. Blizinsky posted to individualism gene culture collectivism coevolution by AlanSchultz to the group Med Anthro @ UF on 2009-11-01 20:16:58 as along with 1 person JoelJacobsen
	Coevolution with viruses drives the evolution of bacterial mutation rates [My Copy] Nature, Vol. 450, No. 7172. (02 December 2007), pp. 1079-1081. by Csaba Pal, Maria D. Macia, Antonio Oliver, Ira Schachar, Angus Buckling posted to mutation_rates evolution coevolution by niallhaslam on 2009-10-29 10:45:59 as along with 4 people yuhc dayjm cjeans cactus
	Quantifying adaptive evolution in the Drosophila immune system. [My Copy] PLoS genetics, Vol. 5, No. 10. (23 October 2009), e1000698. by Darren J. Obbard, John J. Welch, Kang-Wook W. Kim, Francis M. Jiggins posted to parasitism immune evolution drosophilia coevolution arms-race by tomhebbron on 2009-10-28 17:31:26 as along with 2 people dfdong maren
	Concurrent niche and neutral processes in the competitionâcolonization model of species coexistence [My Copy] Proceedings of the Royal Society B: Biological Sciences, Vol. 274, No. 1626. (7 November 2007), pp. 2739-2744. by Marc W. Cadotte posted to niche neutrality micro-organisms colonial coevolution by tomhebbron on 2009-10-23 09:47:02 as along with 2 people haloin skumagai
	The innate signaling of dangers and the dangers of innate signaling [My Copy] Nat Immunol, Vol. 7, No. 12. (16 November 2006), pp. 1237-1242. by Philippe J. Sansonetti posted to tlr signalling immune evolution danger-theory coevolution by tomhebbron on 2009-10-22 16:19:49 as along with 1 person isera
	Antigenic Diversity, Transmission Mechanisms, and the Evolution of Pathogens [My Copy] PLoS Comput Biol, Vol. 5, No. 10. (16 October 2009), e1000536. by Alexander Lange, Neil M. Ferguson posted to read host-parasite diversity coevolution by maren on 2009-10-19 16:30:09 as along with 3 people zwang vdquynh namcdf
	The Coevolution of New Organizational Forms [My Copy] Organization Science, Vol. 10, No. 5. (1999), pp. 535-550. by Arie Y. Lewin, Chris P. Long, Timothy N. Carroll posted to path-dependence organisations coevolution by tomhebbron on 2009-10-14 13:56:04 as along with 1 person matthijs
	Local migration promotes competitive restraint in a hostâpathogen 'tragedy of the commons' [My Copy] Nature, Vol. 442, No. 7098. (06 July 2006), pp. 75-78. by Benjamin Kerr, Claudia Neuhauser, Brendan J. M. Bohannan, Antony M. Dean posted to tragedy_of_the_commons phage migration metapop coevolution by maren on 2009-10-14 02:34:55 as along with 1 person dbikard
	Tangled Trees: Phylogeny, Cospeciation, and Coevolution [My Copy] (01 November 2002) edited by Roderic D. M. Page posted to phylogeny cospeciation coevolution by nuttpo on 2009-10-08 07:19:25 as
	The Coevolution of Network Alliances: A Longitudinal Analysis of an International Professional Service Network [My Copy] Organization Science, Vol. 10, No. 5. (1999), pp. 638-653. by Mitchell P. Koza, Arie Y. Lewin posted to service professional network longitudinal international coevolution analysis alliances by derchao on 2009-10-07 10:18:13 as along with 1 person ivankulis
	Quantitative fitness effects of infection in a gene-for-gene system [My Copy] New Phytologist, Vol. 184, No. 2. (2009), pp. 485-494. by Liping Gao, Fabrice Roux, Joy Bergelson posted to gene-for-gene coevolution by maren on 2009-10-05 17:13:12 as
	The Coevolution of Trust, Control, and Learning in Joint Ventures [My Copy] ORGANIZATION SCIENCE, Vol. 15, No. 5. (1 September 2004), pp. 586-599. by Andrew C. Inkpen, Steven C. Currall posted to ventures trust learning joint control coevolution by derchao on 2009-10-01 07:49:47 as
	The Coevolution of Community Networks and Technology: Lessons from the Flight Simulation Industry [My Copy] Ind Corp Change, Vol. 7, No. 2. (1 June 1998), pp. 311-346. by Lori Rosenkopf, Michael L. Tushman posted to technology simulation networks lessons industry flight community coevolution by derchao on 2009-10-01 07:22:07 as
	Coevolution as a Research Framework for Organizations and the Natural Environment [My Copy] Organization Environment, Vol. 19, No. 4. (1 December 2006), pp. 479-504. by Terry B. Porter posted to research organizations natural framework environment coevolution by derchao on 2009-10-01 07:04:40 as
	The Coevolution of New Organizational Forms in the Fashion Industry: A Historical and Comparative Study of France, Italy, and the United States [My Copy] ORGANIZATION SCIENCE, Vol. 10, No. 5. (1 September 1999), pp. 622-637. by Marie-Laure Djelic, Antti Ainamo posted to united study states organizational new italy industry historical france forms fashion comparative coevolution by derchao on 2009-10-01 06:28:25 as
	Coevolutionary chase on exploiter-victim systems with polygenic characters. [My Copy] Journal of theoretical biology, Vol. 186, No. 4. (21 June 1997), pp. 527-534. by S. Gavrilets posted to model host-parasite coevolution by maren on 2009-09-28 22:46:00 as
	Protein sectors: evolutionary units of three-dimensional structure. [My Copy] Cell, Vol. 138, No. 4. (21 Aug 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted to structure protein interaction fold evolution correlation contact compensatory coevolution by robfsouza on 2009-09-23 19:49:40 as along with 10 people and 1 group yyfwuhan cmzmasek dgront pansapiens pablocarb vvoorr biomcgary dayjm jwm jbhiatt Marcotte_Lab

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evolution	82
model	30
network	26
protein	15
correlated-mutation	14
interaction	13
ppi	10
expression	9
host-parasite	9
cultural-evolution	8
networks	8
paper2	8
protein-interaction	8
residues	8
symbiosis	8
coexpression	7
competition	7
industry	7
mutualism	7
predict	7
adaptation	6
cellular-automata	6
compensatory	6
complexity	6
cooperation	6
culture	6
diversification	6
diversity	6
domain	6
evolution-plant	6
interaction_prediction	6
major-proposal	6
modelling	6
pdfi	6
phylogeny	6
behavior	5
ecology	5
evolution-of-intelligence	5
forms	5
game-theory	5
gp	5
immune	5
interaction_evolution	5
opinion	5
organizational	5
phylogenetic	5
pollination	5
sequence	5
simulation	5
structure	5
ant-fungus-symbiosis	4
arms-race	4
bacteria	4
business	4
community	4
complex	4
docking	4
drosophila	4
evo_502	4
evolutionary-computation	4
fungi	4
ga	4
institution	4
learning	4
mutation	4
norms	4
orchid	4
pathogen	4
profile	4
review	4
speciation	4
statistic	4
technology	4
window	4
alife	3
bioinformatics	3
conflict	3
contact	3
covariation	3
games	3
gene	3
go	3
human	3
learning-and-memory	3
military	3
ml	3
modeling-and-simulation	3
modularity	3
neuroethology	3
proteins	3
robotics	3
selection	3
sequence_weighting	3
sexual_conflict	3
species	3
specificity	3
spread	3
steering	3
theory	3
whole-genomic	3

Tag coevolution [at least 200 articles] Export

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