Tag coexpression [109 articles] Export

Recent papers classified by the tag coexpression.

	A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules [My Copy] Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255. by Joshua M. Stuart, Eran Segal, Daphne Koller, Stuart K. Kim posted to module coexpression by icecrown on 2009-12-07 22:09:13 as along with 25 people and 7 groups sficklin roys thegoose2 cswinburne carlk saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
	Arabidopsis gene co-expression network and its functional modules [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 346. by Linyong Mao, John Van Hemert, Sudhansu Dash, Julie Dickerson posted to module coexpression by icecrown on 2009-12-07 22:01:17 as along with 5 people zchen dolchan venancio Borelli druvus
	Mining for coexpression across hundreds of datasets using novel rank aggregation and visualisation methods [My Copy] Genome Biology, Vol. 10, No. 12. (2009), R139. by Priit Adler, Raivo Kolde, Meelis Kull, et al.Aleksandr Tkachenko, Hedi Peterson, Juri Reimand, Jaak Vilo posted to visualisation coexpression by druvus on 2009-12-07 10:31:05 as along with 3 people daforerog dandaman shikin
	Connexin43 and the brain transcriptome of newborn mice. [My Copy] Genomics, Vol. 89, No. 1. (January 2007), pp. 113-123. by Dumitru A. Iacobas, Sanda Iacobas, David C. Spray posted to gene_expression connexin coexpression by shikin on 2009-12-01 12:49:56 as
	Organizational principles of the connexin-related brain transcriptome. [My Copy] The Journal of membrane biology, Vol. 218, No. 1-3. (August 2007), pp. 39-47. by David C. Spray, Dumitru A. Iacobas posted to gene_expression connexin coexpression by shikin on 2009-12-01 12:46:38 as
	Evidence for large domains of similarly expressed genes in the Drosophila genome [My Copy] Journal of Biology, Vol. 1, No. 1. (2002), 5. by Paul Spellman, Gerald Rubin posted to geneorder coexpression by maximilianh on 2009-11-28 12:43:11 as along with 2 people daveGerrard briann
	Integrated weighted gene co-expression network analysis with an application to chronic fatigue syndrome. [My Copy] BMC systems biology, Vol. 2 (06 November 2008), 95. by Angela P. Presson, Eric M. Sobel, Jeanette C. Papp, et al.Charlyn J. Suarez, Toni Whistler, Mangalathu S. Rajeevan, Suzanne D. Vernon, Steve Horvath posted to pathway-analysis gene_expression coexpression by shikin on 2009-11-24 20:46:17 as along with 4 people sficklin natstreet druvus timrwatkins
	Co-expression Networks: Graph Properties and Topological Comparisons [My Copy] Bioinformatics (12 November 2009), btp632. by Ramon Xulvi-Brunet, Hongzhe Li posted to topology networks graph comparative coexpression analysis by neils on 2009-11-14 00:50:07 as along with 2 people kshameer phoenixzxl
	Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2473-2477. by Antonio Marco, Charlotte Konikoff, Timothy L. Karr, Sudhir Kumar posted to promotors printed drosophila coexpression by Garamonfok on 2009-10-19 15:26:24 as along with 9 people and 1 group bsamal TRHvidsten djkt rdiaz natstreet nuin sebastien_vigneau maximilianh isimpson Jarman Lab
	Cepred: Predicting the Co-Expression Patterns of the Human Intronic microRNAs with Their Host Genes [My Copy] PLoS ONE, Vol. 4, No. 2. (10 February 2009), e4421. by Dong Wang, Ming Lu, Jing Miao, Tingting Li, Edwin Wang, Qinghua Cui posted to printed primates mirna human function coexpression by Garamonfok on 2009-10-19 14:55:41 as along with 9 people and 1 group guhjy suizifish jfr heliopais ealloza samgj pengchy daforerog mhamada microRNA
	The Functional Genomic Distribution of Protein Divergence in Two Animal Phyla: Coevolution, Genomic Conflict, and Constraint [My Copy] Genome Research, Vol. 14, No. 5. (1 May 2004), pp. 802-811. by Cristian I. Castillo-Davis, Fyodor A. Kondrashov, Daniel L. Hartl, Rob J. Kulathinal posted to worms project_funcanalysis printed mammals function expression evolution coexpression by Garamonfok on 2009-10-19 10:34:09 as
	STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 332. by Daniel Jupiter, Hailin Chen, Vincent VanBuren posted to visualization software network integration coexpression by rdiaz on 2009-10-15 18:34:42 as along with 5 people and 1 group sillitoe rcr1991 trogdor druvus torfinnnome Orengo Group Journal Picks
	Positive correlation between gene coexpression and positional clustering in the zebrafish genome [My Copy] BMC Genomics, Vol. 10, No. 1. (22 January 2009), 42. by Yen K. Ng, Wei Wu, Louxin Zhang posted to neighbourhoods journalclub coexpression by cdamasco on 2009-10-09 14:40:43 as along with 1 person druvus
	Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 20. (15 October 2009), pp. 2677-2684. by Kengo Kinoshita, Takeshi Obayashi posted to correlation coexpression by rdiaz on 2009-10-09 10:33:50 as along with 3 people and 1 group daveGerrard kintoki natstreet BergmanLab
	Coexpression network based on natural variation in human gene expression reveals gene interactions and functions [My Copy] Genome Research, Vol. 19, No. 11. (1 November 2009), pp. 1953-1962. by Renuka R. Nayak, Michael Kearns, Richard S. Spielman, Vivian G. Cheung posted to variation reconstruction network expression coexpression by rdiaz on 2009-10-07 11:01:51 as along with 9 people and 1 group antonkratz nsc129psu iskathy lp2 TRHvidsten megraw owhitney tmmurali natstreet Journal picks
	Identifying set-wise differential co-expression in gene expression microarray data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (16 April 2009), 109. by Sung Cho, Jihun Kim, Ju Kim posted to gsea coexpression by rdiaz on 2009-09-29 17:02:53 as along with 4 people and 1 group dipenps tonamswish lwaldron shikin Bioinformatics
	A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (1 May 2009), e1000382. by Nicholas J. Hudson, Antonio Reverter, Brian P. Dalrymple posted to network mutation expression differential coexpression causality by rdiaz on 2009-09-29 10:38:41 as along with 10 people guhjy tmmurali Borelli giovanni cabbagesofdoom roys chrisamiller dswan ptrobajo dolchan
	A methodology for the analysis of differential coexpression across the human lifespan [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (22 September 2009), 306. by Jesse Gillis, Paul Pavlidis posted to human differential compendium coexpression by ptrobajo on 2009-09-27 20:25:52 as
	Conserved Expression Patterns Predict microRNA Targets [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (25 September 2009), e1000513. by William Ritchie, Megha Rajasekhar, Stephane Flamant, John E. J. Rasko posted to mouse microrna human cross-species coexpression by ptrobajo on 2009-09-26 21:22:06 as along with 11 people and 1 group jperkins heliopais gdb samgj ealloza toni_marco neils al2na TRHvidsten djkt cisevol microRNA
	CoXpress: differential co-expression in gene expression data. [My Copy] BMC bioinformatics, Vol. 7 (20 November 2006), 509. by Michael Watson posted to test microarray differential coexpression by ptrobajo on 2009-09-17 21:32:19 as along with 5 people jfr dquest shigepong waszak dps
	Systematic discovery of functional modules and context-specific functional annotation of human genome. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i222-229. by Yu Huang, Haifeng Li, Haiyan Hu, et al.Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine J. Zhou posted to subgraph network module itemset frequent dragan coexpression by ptrobajo on 2009-09-17 15:42:09 as along with 7 people meanerelk Borelli carlk saket jeremymiller cswinburne cabbagezs
	Finding disease specific alterations in the co-expression of genes. [My Copy] Bioinformatics (Oxford, England), Vol. 20 Suppl 1, No. suppl_1. (4 August 2004), pp. i194-199. by Dennis Kostka, Rainer Spang posted to microarray differential coexpression by ptrobajo on 2009-09-17 15:09:47 as along with 2 people and 1 group myzhang diging_data BTS-PT-AS-CS
	Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles. [My Copy] PloS one, Vol. 3, No. 12. (2008) by Carlos Prieto, Alberto Risueño, Celia Fontanillo, Javier De las Rivas posted to coexpression by mingzhi on 2009-09-16 14:04:56 as along with 1 person jfr
	Extensions of sparse canonical correlation analysis with applications to genomic data. [My Copy] Statistical applications in genetics and molecular biology, Vol. 8, No. 1. (2009) by Daniela M. Witten, Robert J. Tibshirani posted to snp integration expression coexpression cnv by rdiaz on 2009-09-15 16:55:10 as
	Automated multidimensional phenotypic profiling using large public microarray repositories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 30. (28 July 2009), pp. 12323-12328. by Min Xu, Wenyuan Li, Gareth M. James, Michael R. Mehan, Xianghong J. Zhou posted to signature profile phenotypic expression coexpression by rdiaz on 2009-09-08 13:01:45 as along with 8 people zufar tmmurali giovanni Borelli guhjy TRHvidsten yaredo ptrobajo
	A stochastic model for identifying differential gene pair co-expression patterns in prostate cancer progression [My Copy] BMC Genomics, Vol. 10, No. 1. (29 July 2009), 340. by Wen Mo, Xu Fu, Xiao Han, et al.Guang Yang, Ji Zhang, Feng Guo, Yan Huang, Yu Mao, Yao Li, Yi Xie posted to progression oncogenetic correlation coexpression by rdiaz on 2009-09-08 12:36:27 as along with 2 people nuin fpattyn
	Statistical methods for gene set co-expression analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2780-2786. by YounJeong Choi, Christina Kendziorski posted to statistics software r-project coexpression by neils on 2009-08-20 00:38:32 as along with 8 people and 1 group zchen jperkins ptrobajo natstreet heliopais dolchan zufar rdiaz Orengo Group Journal Picks
	Identification of rare cancer driver mutations by network reconstruction [My Copy] Genome Research, Vol. 19, No. 9. (2 September 2009), pp. 1570-1578. by Ali Torkamani, Nicholas J. Schork posted to reconstruction network coexpression by rdiaz on 2009-08-18 19:14:03 as along with 4 people xingxu scmelton jessopher chrisamiller
	Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 327. by Mike Mason, Guoping Fan, Kathrin Plath, Qing Zhou, Steve Horvath posted to coexpression network transcription by druvus on 2009-07-21 08:47:14 as
	Construction and use of gene expression covariation matrix [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 214. by Jerome Hennetin, Petri Pehkonen, Michel Bellis posted to affymetrix bioinformatics coexpression covariation microarray single-channel by rschulz on 2009-07-15 14:17:44 as along with 2 people dipenps jmeppley
	Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease [My Copy] Genome Biology, Vol. 10, No. 5. (22 May 2009), R55. by Radu Dobrin, Jun Zhu, Cliona Molony, et al.Carmen Argman, Mark Parrish, Sonia Carlson, Mark Allan, Daniel Pomp, Eric Schadt posted to coexpression integration milka network tissue by ptrobajo on 2009-06-02 21:35:53 as along with 6 people greg winterstream grahamc lp2 roys brianb
	Analyzing miRNA co-expression networks to explore TF-miRNA regulation. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 163. by Sanghamitra Bandyopadhyay, Malay Bhattacharyya posted to coexpression microrna network regulation transcription_factor by ealloza on 2009-05-28 16:05:05 as along with 9 people and 1 group guhjy imina daforerog TRHvidsten SaraNasser natstreet lwaldron erel10 druvus Bioinformatics
	Tissue and Process Specific microRNA–mRNA Co-Expression in Mammalian Development and Malignancy [My Copy] PLoS ONE, Vol. 4, No. 5. (5 May 2009), e5436. by Hongye Liu, Issac S. Kohane posted to coexpression microrna mrna tissue by ealloza on 2009-05-12 18:30:23 as along with 4 people and 1 group tonamswish gdb giovenko roys microRNA
	Coexpression Analysis of Human Genes Across Many Microarray Data Sets [My Copy] Genome Research In Genome Research, Vol. 14, No. 6. (June 2004), pp. 1085-1094. by Homin K. Lee, Amy K. Hsu, Jon Sajdak, Jie Qin, Paul Pavlidis posted to coexpression microarray network reconstruction by cabbagezs on 2009-05-12 16:00:47 as along with 18 people and 2 groups Zephyrus sficklin cswinburne pengchy jiny maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur jo_davies nedwards dragonrez GeschwindLab Indigene
	A graph-based approach to systematically reconstruct human transcriptional regulatory modules [My Copy] Bioinformatics In Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i577-586. by Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong J. Zhou posted to bioinformatics coexpression microarray network by kengg on 2009-04-26 03:41:04 as along with 8 people bsamal vingron cswinburne jiny jfr shigepong dragonrez tmmurali
	Human microRNAs co-silence in well-separated groups and have different predicted essentialities. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1063-1069. by Gábor Boross, Katalin Orosz, Illés J. Farkas posted to coexpression coregulation essentality microrna mrna network by ealloza on 2009-04-08 08:52:30 as along with 6 people and 2 groups heliopais jfr samgj shikin daforerog valeriehilgers microRNA BenosLab
	Diversity and evolution of MicroRNA gene clusters. [My Copy] Science in China. Series C, Life sciences / Chinese Academy of Sciences, Vol. 52, No. 3. (March 2009), pp. 261-266. by Y. Zhang, R. Zhang, B. Su posted to cluster coexpression microrna by ealloza on 2009-03-24 17:37:31 as along with 2 people pengchy samgj
	A general framework for weighted gene co-expression network analysis. [My Copy] Statistical applications in genetics and molecular biology, Vol. 4, No. 1. (2005) by Bin Zhang, Steve Horvath posted to thresholding threshold network correlation coexpression by rdiaz on 2009-03-18 13:47:29 as along with 9 people and 1 group nicholso bertelsen cswinburne druvus pengchy kengg jeremymiller natstreet jo_davies GeschwindLab
	Allegro: Analyzing expression and sequence in concert to discover regulatory programs [My Copy] Nucl. Acids Res. In Nucl. Acids Res., Vol. 37, No. 5. (1 April 2009), pp. 1566-1579. by Yonit Halperin, Chaim Linhart, Igor Ulitsky, Ron Shamir posted to coexpression coregulation integration mirna network rnai by rdiaz on 2009-03-17 14:17:55 as along with 4 people heliopais roys akshayk nuin
	Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous [My Copy] Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1555-1565. by Ben-Yang Liao, Jianzhi Zhang posted to coexpression disadvantage linkage by clearbluespring on 2009-03-08 14:23:37 as along with 6 people daveGerrard Garamonfok djkt aprasad zwang bpcusack
	A Systems Approach Reveals Regulatory Circuitry for <italic>Arabidopsis</italic> Trichome Initiation by the GL3 and GL1 Selectors [My Copy] PLoS Genet, Vol. 5, No. 2. (27 February 2009), e1000396. by Kengo Morohashi, Erich Grotewold posted to chip-chip coexpression tfs by kengg on 2009-03-02 17:00:42 as
	Decoding genes with coexpression networks and metabolomics - 'majority report by precogs'. [My Copy] Trends in plant science, Vol. 13, No. 1. (January 2008), pp. 36-43. by K. Saito, M. Y. Hirai, K. Yonekura-Sakakibara posted to arabidopsis coexpression poplar by Keywan to the group Ondex SABR - Bioenergy project on 2009-02-26 18:57:24 as along with 2 people guhjy klo
	Query large scale microarray compendium datasets using a model-based bayesian approach with variable selection. [My Copy] PloS one, Vol. 4, No. 2. (13 February 2009), e4495. by Ming Hu, Zhaohui S. Qin posted to coexpression correlation integration by rdiaz on 2009-02-19 12:18:45 as along with 2 people guhjy vmedina09
	Integrated network analysis platform for protein-protein interactions [My Copy] Nature Methods, Vol. 6, No. 1. (14 December 2008), pp. 75-77. by Jianmin Wu, Tea Vallenius, Kristian Ovaska, Jukka Westermarck, Tomi P. Makela, Sampsa Hautaniemi posted to coexpression expression snow tools by Garamonfok on 2009-01-26 16:45:50 as along with 6 people karthikraman renatomilani zwang shikin guhjy Terkko
	Align human interactome with phenome to identify causative genes and networks underlying disease families. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 1. (1 January 2009), pp. 98-104. by Xuebing Wu, Qifang Liu, Rui Jiang posted to coexpression gene network by druvus on 2009-01-09 11:47:11 as along with 5 people daforerog jfr saket guhjy grahamc
	Integrating and Annotating the Interactome using the MiMI plugin for Cytoscape. [My Copy] Bioinformatics (Oxford, England) (23 September 2008) by Jing Gao, Alex S S. Ade, V Glenn G. Tarcea, et al.Terry E E. Weymouth, Barbara R R. Mirel, H V V. Jagadish, David J J. States posted to annotation coexpression cytoscape by druvus on 2009-01-09 11:42:11 as along with 4 people and 1 group jfr lptolik dswan guhjy Bioinformatics
	WGCNA: an R package for weighted correlation network analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by Peter Langfelder, Steve Horvath posted to coexpression network r software by druvus on 2009-01-09 11:40:31 as along with 16 people and 2 groups enelkinsan jeremymiller daforerog sficklin lwaldron jfr ekotelnikova slv23 rdiaz guhjy natstreet cswinburne lptolik jmeppley irinamohorianu pengchy Bioinformatics Bioinformatics - CRUK
	SVD-based anatomy of gene expressions for correlation analysis in Arabidopsis thaliana. [My Copy] DNA research : an international journal for rapid publication of reports on genes and genomes, Vol. 15, No. 6. (December 2008), pp. 367-374. by A. Fukushima, M. Wada, S. Kanaya, M. Arita posted to bioinformatics coexpression microarray systems by kengg on 2009-01-08 23:43:01 as
	Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences [My Copy] Genome Biology, Vol. 9 (16 December 2008), R172. by Laurence, Joachim Wittbrodt posted to cisreg coexpression molevol transcription by caseybrown on 2008-12-16 17:18:33 as along with 3 people and 1 group cisstem JeanSteJOLY cisevol cis-regulatory-evolution
	Eigengene networks for studying the relationships between co-expression modules. [My Copy] BMC systems biology, Vol. 1, No. 1. (2007) by Peter Langfelder, Steve Horvath posted to coexpression connection cross-species eigengene module by ptrobajo on 2008-12-08 22:27:13 as along with 7 people jeremymiller tonamswish aviad_work druvus isimpson jfr AlexanderPico

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network	35
expression	33
microarray	32
bioinformatics	26
evolution	14
wgcna	12
gene	10
printed	10
differential	9
microrna	9
coevolution	7
function	7
correlation	6
integration	6
statistics	6
arabidopsis	5
human	5
mammals	5
systems	5
yeast	5
cross-species	4
functional_annotation	4
interaction	4
module	4
mouse	4
mrna	4
software	4
tools	4
transcription	4
cancer	3
gene_expression	3
gene_set_analysis	3
metastudy	3
mirna	3
networks	3
pathway	3
project_coexcoev	3
promotors	3
protein	3
reconstruction	3
review	3
tfs	3
algorithm	2
alzheimers	2
brain	2
brain_cancer	2
coherence	2
comparison	2
connexin	2
conserved	2
coregulation	2
crm	2
database	2
disadvantage	2
disease	2
drosophila	2
duplication	2
factor	2
gene_list_analysis	2
genome	2
gliomas	2
go	2
linkage	2
metabolite	2
model	2
pathway-analysis	2
poplar	2
prediction	2
primates	2
regulation	2
snow	2
systems_biology	2
tissue	2
transgenic	2
worms	2
affymetrix	1
block	1
brassica	1
cisreg	1
cnv	1
covariation	1
expression_level	1
frequent	1
geometric	1
glioblastoma	1
immunohistochemistry	1
itemset	1
journalclub	1
molevol	1
mutation	1
oncogenetic	1
phenotypic	1
profile	1
r	1
ranking	1
statistical_tests	1
stress	1
test	1
threshold	1
thresholding	1

Tag coexpression [109 articles] Export

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