Tag coexpression [102 articles] Export

Recent papers classified by the tag coexpression.

	Relationship between gene co-expression and sharing of transcription factor binding sites in Drosophila melanogaster [My Copy] Bioinformatics, Vol. 25, No. 19. (1 October 2009), pp. 2473-2477. by Antonio Marco, Charlotte Konikoff, Timothy L. Karr, Sudhir Kumar posted to promotors printed drosophila coexpression by Garamonfok on 2009-10-19 15:26:24 as along with 8 people and 1 group TRHvidsten djkt rdiaz natstreet nuin sebastien_vigneau maximilianh isimpson Jarman Lab
	Cepred: Predicting the Co-Expression Patterns of the Human Intronic microRNAs with Their Host Genes [My Copy] PLoS ONE, Vol. 4, No. 2. (10 February 2009), e4421. by Dong Wang, Ming Lu, Jing Miao, Tingting Li, Edwin Wang, Qinghua Cui posted to printed primates mirna human function coexpression by Garamonfok on 2009-10-19 14:55:41 as along with 9 people and 1 group guhjy suizifish jfr heliopais ealloza samgj pengchy daforerog mhamada microRNA
	The Functional Genomic Distribution of Protein Divergence in Two Animal Phyla: Coevolution, Genomic Conflict, and Constraint [My Copy] Genome Research, Vol. 14, No. 5. (1 May 2004), pp. 802-811. by Cristian I. Castillo-Davis, Fyodor A. Kondrashov, Daniel L. Hartl, Rob J. Kulathinal posted to worms project_funcanalysis printed mammals function expression evolution coexpression by Garamonfok on 2009-10-19 10:34:09 as
	STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 332. by Daniel Jupiter, Hailin Chen, Vincent VanBuren posted to visualization software network integration coexpression by rdiaz on 2009-10-15 18:34:42 as along with 5 people and 1 group sillitoe rcr1991 trogdor druvus torfinnnome Orengo Group Journal Picks
	Positive correlation between gene coexpression and positional clustering in the zebrafish genome [My Copy] BMC Genomics, Vol. 10, No. 1. (22 January 2009), 42. by Yen K. Ng, Wei Wu, Louxin Zhang posted to neighbourhoods journalclub coexpression by cdamasco on 2009-10-09 14:40:43 as along with 1 person druvus
	Multi-dimensional correlations for gene coexpression and application to the large-scale data of Arabidopsis. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 20. (15 October 2009), pp. 2677-2684. by Kengo Kinoshita, Takeshi Obayashi posted to correlation coexpression by rdiaz on 2009-10-09 10:33:50 as along with 3 people and 1 group daveGerrard kintoki natstreet BergmanLab
	Coexpression network based on natural variation in human gene expression reveals gene interactions and functions [My Copy] Genome Research, Vol. 19, No. 11. (1 November 2009), pp. 1953-1962. by Renuka R. Nayak, Michael Kearns, Richard S. Spielman, Vivian G. Cheung posted to variation reconstruction network expression coexpression by rdiaz on 2009-10-07 11:01:51 as along with 7 people and 1 group iskathy lp2 TRHvidsten megraw owhitney tmmurali natstreet Journal picks
	Identifying set-wise differential co-expression in gene expression microarray data [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (16 April 2009), 109. by Sung Cho, Jihun Kim, Ju Kim posted to gsea coexpression by rdiaz on 2009-09-29 17:02:53 as along with 4 people and 1 group dipenps tonamswish lwaldron shikin Bioinformatics
	A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation [My Copy] PLoS Comput Biol, Vol. 5, No. 5. (1 May 2009), e1000382. by Nicholas J. Hudson, Antonio Reverter, Brian P. Dalrymple posted to network mutation expression differential coexpression causality by rdiaz on 2009-09-29 10:38:41 as along with 10 people guhjy tmmurali Borelli giovanni cabbagesofdoom roys chrisamiller dswan ptrobajo dolchan
	A methodology for the analysis of differential coexpression across the human lifespan [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (22 September 2009), 306. by Jesse Gillis, Paul Pavlidis posted to human differential compendium coexpression by ptrobajo on 2009-09-27 20:25:52 as
	Conserved Expression Patterns Predict microRNA Targets [My Copy] PLoS Comput Biol, Vol. 5, No. 9. (25 September 2009), e1000513. by William Ritchie, Megha Rajasekhar, Stephane Flamant, John E. J. Rasko posted to mouse microrna human cross-species coexpression by ptrobajo on 2009-09-26 21:22:06 as along with 11 people and 1 group jperkins heliopais gdb samgj ealloza toni_marco neils al2na TRHvidsten djkt cisevol microRNA
	CoXpress: differential co-expression in gene expression data. [My Copy] BMC bioinformatics, Vol. 7 (20 November 2006), 509. by Michael Watson posted to test microarray differential coexpression by ptrobajo on 2009-09-17 21:32:19 as along with 5 people jfr dquest shigepong waszak dps
	Systematic discovery of functional modules and context-specific functional annotation of human genome. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 13. (1 July 2007), pp. i222-229. by Yu Huang, Haifeng Li, Haiyan Hu, et al.Xifeng Yan, Michael S. Waterman, Haiyan Huang, Xianghong Jasmine J. Zhou posted to subgraph network module itemset frequent dragan coexpression by ptrobajo on 2009-09-17 15:42:09 as along with 6 people Borelli carlk saket jeremymiller cswinburne cabbagezs
	Finding disease specific alterations in the co-expression of genes. [My Copy] Bioinformatics (Oxford, England), Vol. 20 Suppl 1, No. suppl_1. (4 August 2004), pp. i194-199. by Dennis Kostka, Rainer Spang posted to microarray differential coexpression by ptrobajo on 2009-09-17 15:09:47 as along with 2 people and 1 group myzhang diging_data BTS-PT-AS-CS
	Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles. [My Copy] PloS one, Vol. 3, No. 12. (2008) by Carlos Prieto, Alberto Risueño, Celia Fontanillo, Javier De las Rivas posted to coexpression by mingzhi on 2009-09-16 14:04:56 as along with 1 person jfr
	Extensions of sparse canonical correlation analysis with applications to genomic data. [My Copy] Statistical applications in genetics and molecular biology, Vol. 8, No. 1. (2009) by Daniela M. Witten, Robert J. Tibshirani posted to snp integration expression coexpression cnv by rdiaz on 2009-09-15 16:55:10 as
	Automated multidimensional phenotypic profiling using large public microarray repositories. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 30. (28 July 2009), pp. 12323-12328. by Min Xu, Wenyuan Li, Gareth M. James, Michael R. Mehan, Xianghong Jasmine J. Zhou posted to signature profile phenotypic expression coexpression by rdiaz on 2009-09-08 13:01:45 as along with 7 people tmmurali giovanni Borelli guhjy TRHvidsten yaredo ptrobajo
	A stochastic model for identifying differential gene pair co-expression patterns in prostate cancer progression [My Copy] BMC Genomics, Vol. 10, No. 1. (29 July 2009), 340. by Wen Mo, Xu Fu, Xiao Han, et al.Guang Yang, Ji Zhang, Feng Guo, Yan Huang, Yu Mao, Yao Li, Yi Xie posted to progression oncogenetic correlation coexpression by rdiaz on 2009-09-08 12:36:27 as along with 2 people nuin fpattyn
	Statistical methods for gene set co-expression analysis [My Copy] Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2780-2786. by YounJeong Choi, Christina Kendziorski posted to statistics software r-project coexpression by neils on 2009-08-20 00:38:32 as along with 6 people ptrobajo natstreet heliopais dolchan zufar rdiaz
	Identification of rare cancer driver mutations by network reconstruction [My Copy] Genome Research, Vol. 19, No. 9. (2 September 2009), pp. 1570-1578. by Ali Torkamani, Nicholas J. Schork posted to reconstruction network coexpression by rdiaz on 2009-08-18 19:14:03 as along with 4 people xingxu scmelton jessopher chrisamiller
	Signed weighted gene co-expression network analysis of transcriptional regulation in murine embryonic stem cells [My Copy] BMC Genomics, Vol. 10, No. 1. (2009), 327. by Mike Mason, Guoping Fan, Kathrin Plath, Qing Zhou, Steve Horvath posted to coexpression network transcription by druvus on 2009-07-21 08:47:14 as
	Construction and use of gene expression covariation matrix [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 214. by Jerome Hennetin, Petri Pehkonen, Michel Bellis posted to affymetrix bioinformatics coexpression covariation microarray single-channel by rschulz on 2009-07-15 14:17:44 as along with 2 people dipenps jmeppley
	Multi-tissue coexpression networks reveal unexpected subnetworks associated with disease [My Copy] Genome Biology, Vol. 10, No. 5. (22 May 2009), R55. by Radu Dobrin, Jun Zhu, Cliona Molony, et al.Carmen Argman, Mark Parrish, Sonia Carlson, Mark Allan, Daniel Pomp, Eric Schadt posted to coexpression integration milka network tissue by ptrobajo on 2009-06-02 21:35:53 as along with 6 people greg winterstream grahamc lp2 roys brianb
	Analyzing miRNA co-expression networks to explore TF-miRNA regulation. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 163. by Sanghamitra Bandyopadhyay, Malay Bhattacharyya posted to coexpression microrna network regulation transcription_factor by ealloza on 2009-05-28 16:05:05 as along with 9 people and 1 group guhjy imina daforerog TRHvidsten SaraNasser natstreet lwaldron erel10 druvus Bioinformatics
	Tissue and Process Specific microRNA–mRNA Co-Expression in Mammalian Development and Malignancy [My Copy] PLoS ONE, Vol. 4, No. 5. (5 May 2009), e5436. by Hongye Liu, Issac S. Kohane posted to coexpression microrna mrna tissue by ealloza on 2009-05-12 18:30:23 as along with 4 people and 1 group tonamswish gdb giovenko roys microRNA
	Coexpression Analysis of Human Genes Across Many Microarray Data Sets [My Copy] Genome Research, Vol. 14, No. 6. (June 2004), pp. 1085-1094. by Homin K. Lee, Amy K. Hsu, Jon Sajdak, Jie Qin, Paul Pavlidis posted to coexpression microarray network reconstruction by cabbagezs on 2009-05-12 16:00:47 as along with 17 people and 2 groups sficklin cswinburne pengchy jiny maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur jo_davies nedwards dragonrez GeschwindLab Indigene
	A graph-based approach to systematically reconstruct human transcriptional regulatory modules [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i577-586. by Xifeng Yan, Michael R. Mehan, Yu Huang, Michael S. Waterman, Philip S. Yu, Xianghong J. Zhou posted to bioinformatics coexpression microarray network by kengg on 2009-04-26 03:41:04 as along with 7 people vingron cswinburne jiny jfr shigepong dragonrez tmmurali
	Human microRNAs co-silence in well-separated groups and have different predicted essentialities. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1063-1069. by Gábor Boross, Katalin Orosz, Illés J. Farkas posted to coexpression coregulation essentality microrna mrna network by ealloza on 2009-04-08 08:52:30 as along with 6 people and 2 groups heliopais jfr samgj shikin daforerog valeriehilgers microRNA BenosLab
	Diversity and evolution of MicroRNA gene clusters. [My Copy] Science in China. Series C, Life sciences / Chinese Academy of Sciences, Vol. 52, No. 3. (March 2009), pp. 261-266. by Y. Zhang, R. Zhang, B. Su posted to cluster coexpression microrna by ealloza on 2009-03-24 17:37:31 as along with 2 people pengchy samgj
	A general framework for weighted gene co-expression network analysis. [My Copy] Statistical applications in genetics and molecular biology, Vol. 4, No. 1. (2005) by Bin Zhang, Steve Horvath posted to thresholding threshold network correlation coexpression by rdiaz on 2009-03-18 13:47:29 as along with 8 people and 1 group bertelsen cswinburne druvus pengchy kengg jeremymiller natstreet jo_davies GeschwindLab
	Allegro: Analyzing expression and sequence in concert to discover regulatory programs [My Copy] Nucl. Acids Res. (16 January 2009), gkn1064. by Yonit Halperin, Chaim Linhart, Igor Ulitsky, Ron Shamir posted to coexpression coregulation integration mirna network rnai by rdiaz on 2009-03-17 14:17:55 as along with 2 people akshayk nuin
	Coexpression of Linked Genes in Mammalian Genomes Is Generally Disadvantageous [My Copy] Mol Biol Evol, Vol. 25, No. 8. (1 August 2008), pp. 1555-1565. by Ben-Yang Liao, Jianzhi Zhang posted to coexpression disadvantage linkage by clearbluespring on 2009-03-08 14:23:37 as along with 6 people daveGerrard Garamonfok djkt aprasad zwang bpcusack
	A Systems Approach Reveals Regulatory Circuitry for <italic>Arabidopsis</italic> Trichome Initiation by the GL3 and GL1 Selectors [My Copy] PLoS Genet, Vol. 5, No. 2. (27 February 2009), e1000396. by Kengo Morohashi, Erich Grotewold posted to chip-chip coexpression tfs by kengg on 2009-03-02 17:00:42 as
	Decoding genes with coexpression networks and metabolomics - 'majority report by precogs'. [My Copy] Trends in plant science, Vol. 13, No. 1. (January 2008), pp. 36-43. by K. Saito, M. Y. Hirai, K. Yonekura-Sakakibara posted to arabidopsis coexpression poplar by Keywan to the group Ondex SABR - Bioenergy project on 2009-02-26 18:57:24 as along with 2 people guhjy klo
	Query large scale microarray compendium datasets using a model-based bayesian approach with variable selection. [My Copy] PloS one, Vol. 4, No. 2. (13 February 2009), e4495. by Ming Hu, Zhaohui S. Qin posted to coexpression correlation integration by rdiaz on 2009-02-19 12:18:45 as along with 2 people guhjy vmedina09
	Integrated network analysis platform for protein-protein interactions. [My Copy] Nature methods (14 December 2008) by Jianmin Wu, Tea Vallenius, Kristian Ovaska, Jukka Westermarck, Tomi P P. Mäkelä, Sampsa Hautaniemi posted to coexpression expression snow tools by Garamonfok on 2009-01-26 16:45:50 as along with 5 people renatomilani zwang shikin guhjy Terkko
	Align human interactome with phenome to identify causative genes and networks underlying disease families. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 1. (1 January 2009), pp. 98-104. by Xuebing Wu, Qifang Liu, Rui Jiang posted to coexpression gene network by druvus on 2009-01-09 11:47:11 as along with 5 people daforerog jfr saket guhjy grahamc
	Integrating and Annotating the Interactome using the MiMI plugin for Cytoscape. [My Copy] Bioinformatics (Oxford, England) (23 September 2008) by Jing Gao, Alex S S. Ade, V Glenn G. Tarcea, et al.Terry E E. Weymouth, Barbara R R. Mirel, H V V. Jagadish, David J J. States posted to annotation coexpression cytoscape by druvus on 2009-01-09 11:42:11 as along with 4 people and 1 group jfr lptolik dswan guhjy Bioinformatics
	WGCNA: an R package for weighted correlation network analysis. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008) by P. Langfelder, S. Horvath posted to coexpression network r software by druvus on 2009-01-09 11:40:31 as along with 14 people and 2 groups daforerog sficklin lwaldron jfr ekotelnikova slv23 rdiaz guhjy natstreet cswinburne lptolik jmeppley irinamohorianu pengchy Bioinformatics Bioinformatics - CRUK
	SVD-based anatomy of gene expressions for correlation analysis in Arabidopsis thaliana. [My Copy] DNA research : an international journal for rapid publication of reports on genes and genomes, Vol. 15, No. 6. (December 2008), pp. 367-374. by A. Fukushima, M. Wada, S. Kanaya, M. Arita posted to bioinformatics coexpression microarray systems by kengg on 2009-01-08 23:43:01 as
	Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences [My Copy] Genome Biology, Vol. 9 (16 December 2008), R172. by Laurence, Joachim Wittbrodt posted to cisreg coexpression molevol transcription by caseybrown on 2008-12-16 17:18:33 as along with 3 people and 1 group cisstem JeanSteJOLY cisevol cis-regulatory-evolution
	Eigengene networks for studying the relationships between co-expression modules [My Copy] BMC Systems Biology, Vol. 1, No. 1. (2007) by Peter Langfelder, Steve Horvath posted to coexpression connection cross-species eigengene module by ptrobajo on 2008-12-08 22:27:13 as along with 6 people tonamswish aviad_work druvus isimpson jfr AlexanderPico
	Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i282-288. by Wei K. Lim, Kai Wang, Celine Lefebvre, Andrea Califano posted to coexpression methods microarray normalization pre-processing by dubhelix on 2008-12-03 20:22:30 as along with 12 people jperkins jeremymiller lawraga bertelsen frohike huiminC giovenko pengchy aramesh2 shigepong ghattem heliopais
	Functional organization of the transcriptome in human brain [My Copy] Nature Neuroscience, Vol. 11, No. 11. (12 October 2008), pp. 1271-1282. by Michael C. Oldham, Genevieve Konopka, Kazuya Iwamoto, et al.Peter Langfelder, Tadafumi Kato, Steve Horvath, Daniel H. Geschwind posted to brain coexpression gene human microarray by dubhelix on 2008-12-03 19:55:36 as along with 8 people and 1 group cassj burak jeremymiller daforerog druvus balicea isimpson psique KCL & UCL Bioinformatics
	Deciphering modular and dynamic behaviors of transcriptional networks. [My Copy] Genomic medicine, Vol. 1, No. 1-2. (2007), pp. 19-28. by M. Zhan posted to coexpression gene review by dubhelix on 2008-11-06 06:44:34 as
	ATTED-II provides coexpressed gene networks for Arabidopsis. [My Copy] Nucleic acids research (25 October 2008) by Takeshi Obayashi, Shinpei Hayashi, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita posted to bioinformatics coexpression by kengg on 2008-10-31 21:03:03 as along with 2 people lptolik druvus
	Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes. [My Copy] Genomics, Vol. 91, No. 3. (March 2008), pp. 243-248. by P. Michalak posted to project_coexcoev printed function expression evolution colcalisation coexpression by Garamonfok on 2008-10-27 15:53:52 as along with 3 people pengchy kengg alhufton
	COXPRESdb: a database of coexpressed gene networks in mammals. [My Copy] Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008) by T. Obayashi, S. Hayashi, M. Shibaoka, M. Saeki, H. Ohta, K. Kinoshita posted to tools printed mammals interaction database coexpression by Garamonfok on 2008-10-24 17:07:18 as along with 6 people roys lawraga nolodie klo jeremymiller guhjy
	Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks [My Copy] Bioinformatics, Vol. 24, No. 21. (1 November 2008), pp. 2491-2497. by Antonio Reverter, Eva K. F. Chan posted to coexpression correlation regulation by barriot on 2008-10-21 06:59:56 as along with 3 people sotacam jfr ggallone
	Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants [My Copy] BMC Systems Biology, Vol. 2, No. 1. (2008) by David Weston, Lee Gunter, Alistair Rogers, Stan Wullschleger posted to coexpression network plant stress by druvus on 2008-10-20 09:28:12 as along with 2 people klo natstreet

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network	35
expression	32
microarray	31
bioinformatics	26
evolution	14
wgcna	12
gene	10
printed	10
differential	9
microrna	9
coevolution	7
function	7
correlation	6
statistics	6
arabidopsis	5
human	5
integration	5
mammals	5
systems	5
yeast	5
cross-species	4
functional_annotation	4
interaction	4
mouse	4
mrna	4
software	4
tools	4
transcription	4
cancer	3
gene_set_analysis	3
metastudy	3
mirna	3
pathway	3
project_coexcoev	3
promotors	3
protein	3
reconstruction	3
review	3
tfs	3
algorithm	2
alzheimers	2
brain	2
brain_cancer	2
coherence	2
comparison	2
conserved	2
coregulation	2
crm	2
database	2
disadvantage	2
disease	2
drosophila	2
duplication	2
factor	2
gene_list_analysis	2
genome	2
gliomas	2
go	2
linkage	2
metabolite	2
model	2
module	2
networks	2
poplar	2
prediction	2
primates	2
regulation	2
snow	2
systems_biology	2
tissue	2
transgenic	2
worms	2
affymetrix	1
block	1
brassica	1
cnv	1
covariation	1
dragan	1
frequent	1
geometric	1
glioblastoma	1
immunohistochemistry	1
itemset	1
journalclub	1
metabolic	1
methods	1
molevol	1
mutation	1
neighbourhoods	1
oncogenetic	1
phenotypic	1
profile	1
project_funcanalysis	1
ranking	1
signature	1
stress	1
test	1
threshold	1
thresholding	1
transcription_factor	1

Tag coexpression [102 articles] Export

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