Tag coiled_coil [66 articles] Export

Recent papers classified by the tag coiled_coil.

	Rational design of helical architectures [My Copy] Proceedings of the National Academy of Sciences In Proceedings of the National Academy of Sciences, Vol. 106, No. 48. (1 December 2009), pp. 20164-20167. by Dwaipayan Chakrabarti, Szilard N. Fejer, David J. Wales posted to protein_design coiled_coil by phoenixzxl on 2009-12-02 02:02:46 as along with 3 people zwang andreassorge jenda_z
	Preferred side-chain constellations at antiparallel coiled-coil interfaces [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 2. (15 January 2008), pp. 530-535. by Erik B. Hadley, Oliver D. Testa, Derek N. Woolfson, Samuel H. Gellman posted to coiled_coil by phoenixzxl on 2009-11-14 03:19:22 as along with 4 people kgutwin patrickking cjeans chdnw
	Intrinsic disorder and coiled-coil formation in prostate apoptosis response factor 4. [My Copy] The FEBS journal, Vol. 276, No. 14. (July 2009), pp. 3710-3728. by David S. Libich, Martin Schwalbe, Sachin Kate, et al.Hariprasad Venugopal, Jolyon K. Claridge, Patrick J. Edwards, Kaushik Dutta, Steven M. Pascal posted to neck_domain lox-1 coiled_coil by oteri on 2009-10-21 19:03:53 as
	A coiled-coil motif that sequesters ions to the hydrophobic core [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 40. (6 October 2009), pp. 16950-16955. by Marcus D. Hartmann, Oswin Ridderbusch, Kornelius Zeth, et al.Reinhard Albrecht, Oli Testa, Derek N. Woolfson, Guido Sauer, Stanislaw Dunin-Horkawicz, Andrei N. Lupas, Birte H. Alvarez posted to coiled_coil by phoenixzxl on 2009-10-09 05:12:13 as along with 2 people paulschlesinger kevinchannon
	CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 21. (1 November 2009), pp. 2757-2763. by Lisa Bartoli, Piero Fariselli, Anders Krogh, Rita Casadio posted to probability coiled_coil by phoenixzxl on 2009-09-11 01:59:27 as
	Model structure of the prototypical non-fimbrial adhesin YadA of Yersinia enterocolitica [My Copy] Journal of Structural Biology, Vol. 155, No. 2. (August 2006), pp. 154-161. by Kristin K. Koretke, Pawel Szczesny, Markus Gruber, Andrei N. Lupas posted to coiled_coil by oteri on 2009-08-22 14:00:50 as
	De novo design of a model peptide sequence to examine the effects of single amino acid substitutions in the hydrophobic core on both stability and oligomerization state of coiled-coils1 [My Copy] Journal of Molecular Biology, Vol. 285, No. 2. (15 January 1999), pp. 785-803. by Kurt Wagschal, Brian Tripet, Robert S. Hodges posted to coiled_coil by oteri on 2009-08-22 13:57:06 as
	The coiled-coil trigger site of the rod domain of cortexillin I unveils a distinct network of interhelical and intrahelical salt bridges [My Copy] Structure, Vol. 8, No. 3. (March 2000), pp. 223-230. by Peter Burkhard, Richard A. Kammerer, Michel O. Steinmetz, Gleb P. Bourenkov, Ueli Aebi posted to coiled_coil by oteri on 2009-08-22 13:56:42 as
	Sequence divergence of coiled coils—structural rods, myosin filament packing, and the extraordinary conservation of cohesins [My Copy] Journal of Structural Biology, Vol. 154, No. 2. (May 2006), pp. 111-121. by Glenn E. White, Harold P. Erickson posted to coiled_coil by oteri on 2009-08-22 13:55:52 as
	Characteristic features of amino acid residues in coiled-coil protein structures [My Copy] Biophysical Chemistry, Vol. 111, No. 2. (1 October 2004), pp. 95-103. by M. Gromiha posted to coiled_coil by oteri on 2009-08-22 13:55:03 as along with 1 person bethbromley
	Evaluation of the energetic contribution of interhelical coulombic interactions for coiled coil helix orientation specificity1 [My Copy] Journal of Molecular Biology, Vol. 313, No. 2. (19 October 2001), pp. 371-383. by Diana L. Mcclain, Joseph P. Binfet, Martha G. Oakley posted to coiled_coil by oteri to the group Structural Biology Group TorVergata on 2009-08-22 13:44:27 as
	Importance of Potential Interhelical Salt-bridges Involving Interior Residues for Coiled-coil Stability and Quaternary Structure [My Copy] Journal of Molecular Biology, Vol. 324, No. 2. (22 November 2002), pp. 257-270. by D. Mcclain posted to coiled_coil by oteri to the group Structural Biology Group TorVergata on 2009-08-22 13:41:44 as
	Kinking the Coiled Coil – Negatively Charged Residues at the Coiled-coil Interface [My Copy] Journal of Molecular Biology, Vol. 366, No. 4. (02 March 2007), pp. 1232-1242. by R. Straussman, A. Benyaacov, D. Woolfson, S. Ravid posted to coiled_coil by oteri to the group Structural Biology Group TorVergata on 2009-08-22 13:37:23 as along with 1 person and 1 group patrickking LOX-1 Receptor
	Analysis of α-Helical Coiled Coils with the Program TWISTER Reveals a Structural Mechanism for Stutter Compensation [My Copy] Journal of Structural Biology, Vol. 137, No. 1-2. (January 2002), pp. 54-64. by S. Strelkov posted to coiled_coil programmi by oteri on 2009-04-21 10:35:17 as
	Single molecule mechanics of the kinesin neck. [My Copy] Proceedings of the National Academy of Sciences of the United States of America (14 April 2009) by Thomas Bornschlögl, Günther Woehlke, Matthias Rief posted to afm coiled_coil kinesin by barry on 2009-04-21 08:14:28 as along with 1 person edws
	Design of protein-interaction specificity gives selective bZIP-binding peptides [My Copy] Nature, Vol. 458, No. 7240. (16 April 2009), pp. 859-864. by Gevorg Grigoryan, Aaron W. Reinke, Amy E. Keating posted to coiled_coil protein_design specificity structure_aided by phoenixzxl on 2009-04-16 07:43:56 as along with 7 people kgutwin carlk kevinchannon pablocarb twatanab absterga jbhiatt
	The structure of alpha-helical coiled coils. [My Copy] Adv Protein Chem, Vol. 70 (2005), pp. 37-78. by A. N. Lupas, M. Gruber posted to coiled_coil by oteri on 2009-04-08 18:31:27 as along with 2 people kgutwin cjeans
	Generalized Crick equations for modeling noncanonical coiled coils. [My Copy] Journal of structural biology, Vol. 137, No. 1-2. (b 2002), pp. 41-53. by Gerald Offer, Matthew R. Hicks, Derek N. Woolfson posted to coiled_coil by oteri to the group Structural Biology Group TorVergata on 2009-04-08 18:27:16 as along with 3 people martainn kgutwin chgjb
	Restraint-driven formation of alpha-helical coiled coils in molecular dynamics simulations [My Copy] Biopolymers, Vol. 50, No. 6. (1999), pp. 667-677. by Pei-Kun Yang, Wen-Shyong Tzou, Ming-Jing Hwang posted to coiled_coil by oteri on 2009-04-08 18:23:36 as
	Computer Modelling of the α-Helical Coiled Coil: Packing of Side-chains in the Inner Core [My Copy] Journal of Molecular Biology, Vol. 249, No. 5. (23 June 1995), pp. 967-987. by G. Offer posted to coiled_coil by oteri on 2009-04-08 18:05:32 as
	Repacking protein cores with backbone freedom: structure prediction for coiled coils. [My Copy] Proc Natl Acad Sci U S A, Vol. 92, No. 18. (29 August 1995), pp. 8408-8412. by P. B. Harbury, B. Tidor, P. S. Kim posted to coiled_coil by oteri on 2009-04-08 17:45:02 as along with 3 people kgutwin dfgreen bethbromley
	Automated modeling of coiled coils: application to the GCN4 dimerization region. [My Copy] Protein Eng, Vol. 4, No. 6. (August 1991), pp. 649-659. by M. Nilges, A. T. Brünger posted to coiled_coil by oteri on 2009-03-24 22:32:16 as along with 2 people kgutwin hplatero
	Engineering Increased Stability into Self-Assembled Protein Fibers [My Copy] Advanced Functional Materials, Vol. 16, No. 8. (2006), pp. 1022-1030. by A. . M. Smith, E. . F. Banwell, W. . R. Edwards, M. . J. Pandya, D. . N. Woolfson posted to alpha-helix coiled_coil fibre fibrous peptide saf self_assembly by patrickking on 2009-03-12 11:55:56 as
	Peptide-based fibrous biomaterials: some things old, new and borrowed [My Copy] Current Opinion in Chemical Biology, Vol. 10, No. 6. (December 2006), pp. 559-567. by D. Woolfson, M. Ryadnov posted to alpha-helix coiled_coil collagen fibrous review self_assembly by patrickking on 2009-03-12 11:43:28 as along with 1 person markchen
	Exploring the conserved water site and hydration of a coiled-coil trimerisation motif: a MD simulation study. [My Copy] Chembiochem : a European journal of chemical biology, Vol. 9, No. 11. (21 July 2008), pp. 1749-1756. by J. Dolenc, R. Baron, J. H. Missimer, M. O. Steinmetz, W. F. van Gunsteren posted to coiled_coil neck_domain by oteri on 2009-03-11 17:11:28 as along with 2 people Lombardo_7 kgutwin
	Engineering nanoscale order into a designed protein fiber [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 26. (26 June 2007), pp. 10853-10858. by David Papapostolou, Andrew M. Smith, Edward D. T. Atkins, et al.Seb J. Oliver, Maxim G. Ryadnov, Louise C. Serpell, Derek N. Woolfson posted to alpha-helix coiled_coil fibre fibrous saf by patrickking on 2009-03-06 17:03:04 as along with 4 people and 1 group pjkiley evan2008 jmrivort bethbromley Supramolecular
	Crystal structures of tropomyosin: flexible coiled-coil. [My Copy] Advances in experimental medicine and biology, Vol. 592 (2007), pp. 137-151. by Y. Nitanai, S. Minakata, K. Maeda, N. Oda, Y. Maéda posted to coiled_coil neck_domain by oteri on 2009-03-06 16:33:13 as
	Using alpha-helical coiled-coils to design nanostructured metalloporphyrin arrays. [My Copy] Journal of the American Chemical Society, Vol. 130, No. 36. (10 September 2008), pp. 11921-11927. by K. A. McAllister, H. Zou, F. V. Cochran, et al.G. M. Bender, A. Senes, H. C. Fry, V. Nanda, P. A. Keenan, J. D. Lear, J. G. Saven, M. J. Therien, J. K. Blasie, W. F. DeGrado posted to coiled_coil neck_domain by oteri to the group LOX-1 Receptor on 2009-03-06 16:32:42 as along with 1 person and 1 group evan2008 KeatingJClub
	Atypical bZIP Domain of Viral Transcription Factor Contributes to Stability of Dimer Formation and Transcriptional Function. [My Copy] J Virol, Vol. 81, No. 13. (July 2007), pp. 7149-7155. by C. Schelcher, S. Al Mehairi, E. Verrall, et al.Q. Hope, K. Flower, B. Bromley, D. N. Woolfson, M. J. West, A. J. Sinclair posted to alpha-helix coiled_coil by patrickking on 2009-03-06 12:09:50 as along with 2 people cjeans bethbromley
	Self-assembled templates for polypeptide synthesis. [My Copy] J Am Chem Soc, Vol. 129, No. 45. (14 November 2007), pp. 14074-14081. by M. G. Ryadnov, D. N. Woolfson posted to alpha-helix coiled_coil fibre fibrous longest_peptide saf by patrickking on 2009-03-06 12:08:42 as along with 2 people kevinchannon chdnw
	Templating silica nanostructures on rationally designed self-assembled peptide fibers. [My Copy] Langmuir : the ACS journal of surfaces and colloids, Vol. 24, No. 20. (21 October 2008), pp. 11778-11783. by S. C. Holmström, P. J. King, M. G. Ryadnov, M. F. Butler, S. Mann, D. N. Woolfson posted to alpha-helix biomineralisation coiled_coil saf by patrickking on 2009-03-06 11:56:54 as along with 1 person and 1 group evan2008 KeatingJClub
	CC+: a relational database of coiled-coil structures. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (1 January 2009), pp. D315-322. by Oliver D. Testa, Efrosini Moutevelis, Derek N. Woolfson posted to bioinformatics cc coiled_coil database by patrickking on 2009-03-06 11:50:03 as along with 4 people TLVincent krapnik Zoltan_Barczikay kgutwin
	A Periodic Table of Coiled-Coil Protein Structures [My Copy] Journal of Molecular Biology, Vol. 385, No. 3. (23 January 2009), pp. 726-732. by Efrosini Moutevelis, Derek N. Woolfson posted to bioinformatics coiled_coil by patrickking on 2009-03-06 11:48:02 as along with 4 people and 1 group pjkiley TLVincent Lombardo_7 kgutwin KeatingJClub
	Predicting helix-helix interactions from residue contacts in membrane proteins [My Copy] Bioinformatics, Vol. 25, No. 8. (15 April 2009), pp. 996-1003. by Allan Lo, Yi-Yuan Chiu, Einar A. Rodland, Ping-Chiang Lyu, Ting-Yi Sung, Wen-Lian Hsu posted to prediction_ppi coiled_coil by phoenixzxl on 2009-03-03 01:19:31 as along with 7 people dfdong xdeupi ChanghuiYan george_g friendpine neils zwang
	Coiled-Coil Irregularities and Instabilities in Group A Streptococcus M1 Are Required for Virulence [My Copy] Science, Vol. 319, No. 5868. (7 March 2008), pp. 1405-1408. by Case McNamara, Annelies S. Zinkernagel, Pauline Macheboeuf, Madeleine W. Cunningham, Victor Nizet, Partho Ghosh posted to coiled_coil by oteri on 2009-02-23 13:55:37 as along with 3 people loison davidlott phoenixzxl
	Inter-dependence of dimerization and organelle binding in myosinXI [My Copy] The Plant Journal, Vol. 55, No. 3. (August 2008), pp. 478-490. by Li, Jian-Feng, Nebenfuhr, Andreas posted to coiled_coil by oteri on 2009-02-23 13:55:14 as
	Symmetry, Form, and Shape: Guiding Principles for Robustness in Macromolecular Machines. [My Copy] Annu Rev Biophys Biomol Struct (13 January 2006) by Florence Tama, Charles L L. Brooks Iii posted to coiled_coil by oteri on 2009-02-23 13:54:04 as along with 1 person bilab
	INTERMEDIATE FILAMENTS: Molecular Structure, Assembly Mechanism, and Integration Into Functionally Distinct Intracellular Scaffolds [My Copy] Annual Review of Biochemistry, Vol. 73, No. 1. (2004), pp. 749-789. by Harald Herrmann, Ueli Aebi posted to coiled_coil by oteri on 2009-02-23 13:53:42 as
	Nonlinear elasticity of an alpha-helical polypeptide [My Copy] Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 71, No. 3. (2005) by Buddhapriya Chakrabarti, Alex J. Levine posted to coiled_coil by oteri on 2009-02-23 13:53:09 as along with 1 person pjkiley
	Modeling effects of mutations in coiled-coil structures: Case study using epidermolysis bullosa simplex mutations in segment 1a of k5/k14 intermediate filaments [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 55, No. 4. (2004), pp. 1043-1052. by Thomasin A. Smith, Peter M. Steinert, David A. D. Parry posted to coiled_coil by oteri on 2009-02-23 13:52:41 as
	Crystal structure of a conserved N-terminal domain of histone deacetylase 4 reveals functional insights into glutamine-rich domains [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 11. (13 March 2007), pp. 4297-4302. by Liang Guo, Aidong Han, Darren L. Bates, Jue Cao, Lin Chen posted to coiled_coil by oteri to the group Structural Biology Group TorVergata on 2009-02-23 13:52:17 as along with 1 group LOX-1 Receptor
	A buried polar interaction can direct the relative orientation of helices in a coiled coil. [My Copy] Biochemistry, Vol. 37, No. 36. (8 September 1998), pp. 12603-12610. by M. G. Oakley, P. S. Kim posted to antiparallel asn asparagine coiled_coil parallel polar by patrickking on 2009-02-23 12:16:32 as along with 1 person Lombardo_7
	Predicting helix orientation for coiled-coil dimers. [My Copy] Proteins, Vol. 72, No. 3. (15 August 2008), pp. 1048-1065. by James R. Apgar, Karl N. Gutwin, Amy E. Keating posted to coiled_coil by oteri on 2009-02-20 18:37:13 as along with 2 people TLVincent kgutwin
	Molecular dynamics guided study of salt bridge length dependence in both fluorinated and non-fluorinated parallel dimeric coiled-coils [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Scott S. Pendley, Yihua B. Yu, Thomas posted to coiled_coil by oteri to the group LOX-1 Receptor on 2009-02-20 18:36:23 as along with 2 people Vadikus Lombardo_7
	The design of coiled-coil structures and assemblies. [My Copy] Adv Protein Chem, Vol. 70 (2005), pp. 79-112. by D. N. Woolfson posted to coiled_coil by oteri on 2009-02-20 18:33:54 as along with 5 people kgutwin markchen gbartbristol bethbromley ca3295
	Fifty years of coiled-coils and alpha-helical bundles: a close relationship between sequence and structure. [My Copy] Journal of structural biology, Vol. 163, No. 3. (8 September 2008), pp. 258-269. by David A. Parry, Bruce D. Fraser, John M. Squire posted to coiled_coil neck_domain by oteri to the group Structural Biology Group TorVergata on 2009-02-20 17:35:42 as along with 4 people and 1 group martainn Lombardo_7 kevinchannon kgutwin LOX-1 Receptor
	Coiled-coil assembly by peptides with non-heptad sequence motifs [My Copy] Folding and Design, Vol. 2, No. 3. (June 1997), pp. 149-158. by M. Hicks posted to coiled_coil by oteri on 2009-02-10 23:29:43 as
	Conformational intermediates in the folding of a coiled-coil model peptide of the N-terminus of tropomyosin and alpha alpha-tropomyosin. [My Copy] Protein science : a publication of the Protein Society, Vol. 2, No. 8. (August 1993), pp. 1263-1273. by N. J. Greenfield, S. E. Hitchcock-DeGregori posted to coiled_coil by oteri on 2009-02-10 23:07:41 as
	An HMM model for coiled-coil domains and a comparison with PSSM-based predictions. [My Copy] Bioinformatics (Oxford, England), Vol. 18, No. 4. (April 2002), pp. 617-625. by Mauro Delorenzi, Terry Speed posted to coiled_coil by oteri on 2009-02-10 23:06:54 as along with 6 people TLVincent kgutwin hansen cjeans gwenknight ca3295
	The Fourier transform of the coiled-coil model for $α$-keratin [My Copy] Acta Crystallographica, Vol. 17, No. 7. (Jul 1964), pp. 813-816. by R. D. B. Fraser, T. P. Macrae, A. Miller posted to coiled_coil by oteri on 2009-02-10 23:06:31 as

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neck_domain	8
alpha-helix	7
specificity	5
fibrous	4
kinesin	4
leucine_zipper	4
review	4
saf	4
bioinformatics	3
fibre	3
molecular_motors	3
protein_design	3
antiparallel	2
programmi	2
self_assembly	2
snare	2
stability	2
afm	1
asn	1
asparagine	1
bcl-2	1
beclin	1
biomineralisation	1
book	1
cc	1
classification	1
collagen	1
database	1
design	1
desolvation	1
drug	1
drug_delivery	1
electrostatic	1
folding	1
hydrophobic_core	1
longest_peptide	1
lox-1	1
membrane	1
membrane_fusion	1
network_dynamic	1
network_ppi	1
neurotransmission	1
parallel	1
peptide	1
pharmacology	1
polar	1
prediction_ppi	1
probability	1
protein	1
protein_folding	1
protein_interactions	1
protein_stability	1
salt_bridges	1
structure	1
structure_aided	1
structure_prediction	1
trafficking	1

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