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Tag comparative_genomics [157 articles]

Recent papers classified by the tag comparative_genomics.
  • Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
    Nature, Vol. 450, No. 7167., pp. 219-232.
    by Alexander Stark, Michael F Lin, Pouya Kheradpour, Jakob S Pedersen, Leopold Parts, Joseph W Carlson, Madeline A Crosby, Matthew D Rasmussen, Sushmita Roy, Ameya N Deoras, Graham J Ruby, Julius Brennecke, Harvard F Curators, Berkeley, Emily Hodges, Angie S Hinrichs, Anat Caspi, Benedict Paten, Seung-Won Park, Mira V Han, Morgan L Maeder, Benjamin J Polansky, Bryanne E Robson, Stein Aerts, Jacques van Helden, Bassem Hassan, Donald G Gilbert, Deborah A Eastman, Michael Rice, Michael Weir, Matthew W Hahn, Yongkyu Park, Colin N Dewey, Lior Pachter, James W Kent, David Haussler, Eric C Lai, David P Bartel, Gregory J Hannon, Thomas C Kaufman, Michael B Eisen, Andrew G Clark, Douglas Smith, Susan E Celniker, William M Gelbart, Manolis Kellis
    posted to comparative_genomics by tmmurali on 2007-11-07 22:30:04 as ***** along with 14 people and 3 groups operon djkt timflutre stajich lp2 cabbagezs nklee hpaces roys caseybrown gjuggler shuzhens PetrovLab cisevol csb_journal_club_public Berkeley Mycology Drosophila-Genetics-Genomics-2008
  • Evolutionary genomics: Come fly with us
    Nature, Vol. 450, No. 7167. (07 November 2007), pp. 184-185.
    by Ewan Birney
    posted to comparative_genomics by tmmurali on 2007-11-07 22:53:42 as ***** along with 1 person and 1 group dullhunk csb_journal_club_public
  • Comparative hybridization reveals extensive genome variation in the AIDS-associated pathogen Cryptococcus neoformans
    Genome Biology, Vol. 9 (22 February 2008), R41.
    by Guanggan Hu, Iris Liu, Anita Sham, Jason E Stajich, Fred S Dietrich, James W Kronstad
    posted to cgh comparative_genomics cryptococcus fungi by stajich on 2008-05-19 06:48:44 as read along with 1 group Berkeley Mycology
  • Comparative genome and proteome analysis of Anopheles gambiae and Drosophila melanogaster.
    Science, Vol. 298, No. 5591. (4 October 2002), pp. 149-159.
    by EM Zdobnov, C von Mering, I Letunic, D Torrents, M Suyama, RR Copley, GK Christophides, D Thomasova, RA Holt, GM Subramanian, HM Mueller, G Dimopoulos, JH Law, MA Wells, E Birney, R Charlab, AL Halpern, E Kokoza, CL Kraft, Z Lai, S Lewis, C Louis, C Barillas-Mury, D Nusskern, GM Rubin, SL Salzberg, GG Sutton, P Topalis, R Wides, P Wincker, M Yandell, FH Collins, J Ribeiro, WM Gelbart, FC Kafatos, P Bork
    posted to anopheles comparative_genomics by stajich on 2007-12-16 01:03:21 as ** along with 1 person and 1 group sdinka Berkeley Mycology
  • Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    Genome Res. (7 November 2007), gr.6593807.
    by Alexander Stark, Pouya Kheradpour, Leopold Parts, Julius Brennecke, Emily Hodges, Gregory J Hannon, Manolis Kellis
    posted to comparative_genomics drosophila fly mirna prediction by stajich on 2008-03-11 00:31:16 as ** along with 4 people and 2 groups lp2 cabbagezs heliopais maralena microRNA Berkeley Mycology
  • Evolution of genes and genomes on the Drosophila phylogeny
    Nature, Vol. 450, No. 7167. (November 2007), pp. 203-218.
    posted to 12flies comparative_genomics drosophila genome_paper by stajich on 2007-12-16 01:04:03 as ** along with 20 people and 6 groups pengchy operon tmmurali indigoviolet djkt timflutre zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics EisenLab csb_journal_club_public Berkeley Mycology BergmanLab Drosophila-Genetics-Genomics-2008
  • What can comparative genomics tell us about species concepts in the genus Aspergillus?
    Studies in mycology, Vol. 59 (2007), pp. 11-17.
    by A Rokas, G Payne, ND Fedorova, SE Baker, M Machida, J Yu, DR Georgianna, RA Dean, D Bhatnagar, TE Cleveland, JR Wortman, R Maiti, V Joardar, P Amedeo, DW Denning, WC Nierman
    posted to aspergillus comparative_genomics fungi by stajich on 2008-05-25 20:56:19 as ** along with 1 group Berkeley Mycology
  • Identification and characterization of insect-specific proteins by genome data analysis
    BMC Genomics, Vol. 8 (04 April 2007), 93.
    by Guojie Zhang, Hongsheng Wang, Junjie Shi, Xiaoling Wang, Hongkun Zheng, Gane K Wong, Terry Clark, Wen Wang, Jun Wang, Le Kang
    posted to bioinformatics comparative_genomics evolution by stajich on 2007-04-19 22:05:57 as ** along with 2 people and 2 groups tharris dpollard C. elegans / WormBase EisenLab
  • CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction
    Genome Biology, Vol. 8 (20 December 2007), R269.
    by Samuel S Gross, Chuong B Do, Marina Sirota, Serafim Batzoglou
    posted to comparative_genomics gene_prediction by stajich on 2007-12-23 21:48:05 as *** along with 2 people and 2 groups GustavoLacerda renatomilani EisenLab Berkeley Mycology
  • Comparative genome analysis of filamentous fungi reveals gene family expansions associated with fungal pathogenesis.
    PLoS ONE, Vol. 3, No. 6. (2008)
    by DM Soanes, I Alam, M Cornell, HM Wong, C Hedeler, NW Paton, M Rattray, SJ Hubbard, SG Oliver, NJ Talbot
    posted to analysis comparative_genomics fungi genome phylogenomics by stajich on 2008-08-16 00:49:43 as ** along with 2 people and 1 group bcondon GustavoLacerda Berkeley Mycology
  • Comparative genomics of fungal allergens and epitopes shows widespread distribution of closely related allergen and epitope orthologues
    BMC Genomics, Vol. 7 (09 October 2006), 251.
    by Paul Bowyer, Marcin Fraczek, David W Denning
    posted to allergen comparative_genomics fungal genome by stajich on 2007-09-04 22:04:45 as **
  • Initial sequencing and comparative analysis of the mouse genome.
    Nature, Vol. 420, No. 6915. (5 December 2002), pp. 520-562.
    by RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, R Agarwala, R Ainscough, M Alexandersson, P An, SE Antonarakis, J Attwood, R Baertsch, J Bailey, K Barlow, S Beck, E Berry, B Birren, T Bloom, P Bork, M Botcherby, N Bray, MR Brent, DG Brown, SD Brown, C Bult, J Burton, J Butler, RD Campbell, P Carninci, S Cawley, F Chiaromonte, AT Chinwalla, DM Church, M Clamp, C Clee, FS Collins, LL Cook, RR Copley, A Coulson, O Couronne, J Cuff, V Curwen, T Cutts, M Daly, R David, J Davies, KD Delehaunty, J Deri, ET Dermitzakis, C Dewey, NJ Dickens, M Diekhans, S Dodge, I Dubchak, DM Dunn, SR Eddy, L Elnitski, RD Emes, P Eswara, E Eyras, A Felsenfeld, GA Fewell, P Flicek, K Foley, WN Frankel, LA Fulton, RS Fulton, TS Furey, D Gage, RA Gibbs, G Glusman, S Gnerre, N Goldman, L Goodstadt, D Grafham, TA Graves, ED Green, S Gregory, R Guigó, M Guyer, RC Hardison, D Haussler, Y Hayashizaki, LW Hillier, A Hinrichs, W Hlavina, T Holzer, F Hsu, A Hua, T Hubbard, A Hunt, I Jackson, DB Jaffe, LS Johnson, M Jones, TA Jones, A Joy, M Kamal, EK Karlsson, D Karolchik, A Kasprzyk, J Kawai, E Keibler, C Kells, WJ Kent, A Kirby, DL Kolbe, I Korf, RS Kucherlapati, EJ Kulbokas, D Kulp, T Landers, JP Leger, S Leonard, I Letunic, R Levine, J Li, M Li, C Lloyd, S Lucas, B Ma, DR Maglott, ER Mardis, L Matthews, E Mauceli, JH Mayer, M McCarthy, WR McCombie, S McLaren, K McLay, JD McPherson, J Meldrim, B Meredith, JP Mesirov, W Miller, TL Miner, E Mongin, KT Montgomery, M Morgan, R Mott, JC Mullikin, DM Muzny, WE Nash, JO Nelson, MN Nhan, R Nicol, Z Ning, C Nusbaum, MJ O'Connor, Y Okazaki, K Oliver, E Overton-Larty, L Pachter, G Parra, KH Pepin, J Peterson, P Pevzner, R Plumb, CS Pohl, A Poliakov, TC Ponce, CP Ponting, S Potter, M Quail, A Reymond, BA Roe, KM Roskin, EM Rubin, AG Rust, R Santos, V Sapojnikov, B Schultz, J Schultz, MS Schwartz, S Schwartz, C Scott, S Seaman, S Searle, T Sharpe, A Sheridan, R Shownkeen, S Sims, JB Singer, G Slater, A Smit, DR Smith, B Spencer, A Stabenau, N Stange-Thomann, C Sugnet, M Suyama, G Tesler, J Thompson, D Torrents, E Trevaskis, J Tromp, C Ucla, A Ureta-Vidal, JP Vinson, AC Von Niederhausern, CM Wade, M Wall, RJ Weber, RB Weiss, MC Wendl, AP West, K Wetterstrand, R Wheeler, S Whelan, J Wierzbowski, D Willey, S Williams, RK Wilson, E Winter, KC Worley, D Wyman, S Yang, SP Yang, EM Zdobnov, MC Zody, ES Lander,
    posted to comparative_genomics genome_paper mouse by stajich on 2007-12-16 01:02:37 as ** along with 17 people and 2 groups dkulp sdinka Cortel jwortman Dax42 aprasad ccots indigoviolet adepace treangen joshuashen djkt olympos hausen yoanjacquemin elfar OriginalLurch EisenLab Berkeley Mycology
  • Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities
    BMC Genomics, Vol. 9 (29 April 2008), 200.
    by Bryony AP Williams, Renny CH Lee, James J Becnel, Louis M Weiss, Naomi M Fast, Patrick J Keeling
    posted to comparative_genomics genome microsporidia by stajich on 2008-07-07 03:36:49 as ** along with 1 group Berkeley Mycology
  • notes The fungus Ustilago maydis and humans share disease-related proteins that are not found in Saccharomyces cerevisiae
    BMC Genomics, Vol. 8 (20 December 2007), 473.
    by Martin Muensterkoetter, Gero Steinberg
    posted to comparative_genomics ustilago by stajich on 2007-12-23 21:45:59 as ** along with 2 people and 1 group GustavoLacerda seitentaisei Berkeley Mycology
  • The genome of the brown alga Ectocarpus siliculosus contains a series of viral DNA pieces, suggesting an ancient association with large dsDNA viruses
    BMC Evolutionary Biology, Vol. 8 (12 April 2008), 110.
    by Nicolas Delaroque, Wilhelm Boland
    posted to algae comparative comparative_genomics genome virus by stajich on 2008-04-15 06:20:29 as ** along with 1 group Berkeley Mycology
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to briggsae caenorhabditis comparative_genomics genome_paper nematode by stajich on 2007-12-16 01:00:16 as ** along with 2 people and 2 groups tharris sujaikumar C. elegans / WormBase Berkeley Mycology
  • Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
    Genome Biology, Vol. 9 (11 January 2008), R7.
    by Brian J Haas, Steven L Salzberg, Wei Zhu, Mihaela Pertea, Jonathan E Allen, Joshua Orvis, Owen R White, Robin C Buell, Jennifer R Wortman
    posted to combiners comparative_genomics gene_prediction genome_annotation by stajich on 2008-01-21 02:09:44 as ** along with 3 people and 1 group druvus GustavoLacerda mclarenv Berkeley Mycology
  • Evolution of sensory complexity recorded in a myxobacterial genome
    PNAS, Vol. 103, No. 41. (10 October 2006), pp. 15200-15205.
    by BS Goldman, WC Nierman, D Kaiser, SC Slater, AS Durkin, JA Eisen, CM Ronning, WB Barbazuk, M Blanchard, C Field, C Halling, G Hinkle, O Iartchuk, HS Kim, C Mackenzie, R Madupu, N Miller, A Shvartsbeyn, SA Sullivan, M Vaudin, R Wiegand, HB Kaplan
    posted to cellular_signaling comparative_genomics development genome multicellular myxobacterial by stajich on 2006-12-12 14:29:31 as **** along with 3 people bjorns treangen blobbybirdman
  • Distinguishing protein-coding and noncoding genes in the human genome
    Proceedings of the National Academy of Sciences (26 November 2007), 0709013104.
    by Michele Clamp, Ben Fry, Mike Kamal, Xiaohui Xie, James Cuff, Michael F Lin, Manolis Kellis, Kerstin Lindblad-Toh, Eric S Lander
    posted to annotation comparative_genomics gene_finding genome_annotation human noncoding by stajich on 2007-12-09 07:18:24 as ** along with 15 people and 3 groups tmmurali rvosa balicea sebastien_vigneau giovanni neils cjeans cabbagezs maximilianh oelemento gjuggler slroberd renatomilani gracio Ema EisenLab FAB-lab Berkeley Mycology
  • A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands
    Genes Dev., Vol. 22, No. 1. (1 January 2008), pp. 8-13.
    by Alexander Stark, Natascha Bushati, Calvin H Jan, Pouya Kheradpour, Emily Hodges, Julius Brennecke, David P Bartel, Stephen M Cohen, Manolis Kellis
    posted to comparative_genomics drosophila mirna noncoding_rna by stajich on 2008-04-05 19:55:44 as ** along with 4 people and 1 group sebastien_vigneau heliopais Alexander_Kanitz maralena Berkeley Mycology
  • Targeted discovery of novel human exons by comparative genomics
    Genome Res. (7 November 2007), gr.7128207.
    by Adam Siepel, Mark Diekhans, Brona Brejova, Laura Langton, Michael Stevens, Charles L Comstock, Colleen Davis, Brent Ewing, Shelly Oommen, Christopher Lau, Hung-Chun Yu, Jianfeng Li, Bruce A Roe, Phil Green, Daniela S Gerhard, Gary Temple, David Haussler, Michael R Brent
    posted to comparative_genomics gene_finding gene_prediction by stajich on 2007-11-19 21:02:23 as ** along with 2 people dchughes wenhan
  • Genome sequence of the Brown Norway rat yields insights into mammalian evolution.
    Nature, Vol. 428, No. 6982. (1 April 2004), pp. 493-521.
    by RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, S Scherer, G Scott, D Steffen, KC Worley, PE Burch, G Okwuonu, S Hines, L Lewis, C DeRamo, O Delgado, S Dugan-Rocha, G Miner, M Morgan, A Hawes, R Gill, Celera, RA Holt, MD Adams, PG Amanatides, H Baden-Tillson, M Barnstead, S Chin, CA Evans, S Ferriera, C Fosler, A Glodek, Z Gu, D Jennings, CL Kraft, T Nguyen, CM Pfannkoch, C Sitter, GG Sutton, JC Venter, T Woodage, D Smith, HM Lee, E Gustafson, P Cahill, A Kana, L Doucette-Stamm, K Weinstock, K Fechtel, RB Weiss, DM Dunn, ED Green, RW Blakesley, GG Bouffard, PJ De Jong, K Osoegawa, B Zhu, M Marra, J Schein, I Bosdet, C Fjell, S Jones, M Krzywinski, C Mathewson, A Siddiqui, N Wye, J McPherson, S Zhao, CM Fraser, J Shetty, S Shatsman, K Geer, Y Chen, S Abramzon, WC Nierman, PH Havlak, R Chen, KJ Durbin, A Egan, Y Ren, XZ Song, B Li, Y Liu, X Qin, S Cawley, KC Worley, AJ Cooney, LM D'Souza, K Martin, JQ Wu, ML Gonzalez-Garay, AR Jackson, KJ Kalafus, MP McLeod, A Milosavljevic, D Virk, A Volkov, DA Wheeler, Z Zhang, JA Bailey, EE Eichler, E Tuzun, E Birney, E Mongin, A Ureta-Vidal, C Woodwark, E Zdobnov, P Bork, M Suyama, D Torrents, M Alexandersson, BJ Trask, JM Young, H Huang, H Wang, H Xing, S Daniels, D Gietzen, J Schmidt, K Stevens, U Vitt, J Wingrove, F Camara, M Mar Albà, JF Abril, R Guigo, A Smit, I Dubchak, EM Rubin, O Couronne, A Poliakov, N Hübner, D Ganten, C Goesele, O Hummel, T Kreitler, YA Lee, J Monti, H Schulz, H Zimdahl, H Himmelbauer, H Lehrach, HJ Jacob, S Bromberg, J Gullings-Handley, MI Jensen-Seaman, AE Kwitek, J Lazar, D Pasko, PJ Tonellato, S Twigger, CP Ponting, JM Duarte, S Rice, L Goodstadt, SA Beatson, RD Emes, EE Winter, C Webber, P Brandt, G Nyakatura, M Adetobi, F Chiaromonte, L Elnitski, P Eswara, RC Hardison, M Hou, D Kolbe, K Makova, W Miller, A Nekrutenko, C Riemer, S Schwartz, J Taylor, S Yang, Y Zhang, K Lindpaintner, TD Andrews, M Caccamo, M Clamp, L Clarke, V Curwen, R Durbin, E Eyras, SM Searle, GM Cooper, S Batzoglou, M Brudno, A Sidow, EA Stone, JC Venter, BA Payseur, G Bourque, C López-Otín, XS Puente, K Chakrabarti, S Chatterji, C Dewey, L Pachter, N Bray, VB Yap, A Caspi, G Tesler, PA Pevzner, D Haussler, KM Roskin, R Baertsch, H Clawson, TS Furey, AS Hinrichs, D Karolchik, WJ Kent, KR Rosenbloom, H Trumbower, M Weirauch, DN Cooper, PD Stenson, B Ma, M Brent, M Arumugam, D Shteynberg, RR Copley, MS Taylor, H Riethman, U Mudunuri, J Peterson, M Guyer, A Felsenfeld, S Old, S Mockrin, F Collins,
    posted to comparative_genomics genome_paper rat by stajich on 2007-12-16 01:02:12 as ** along with 6 people and 4 groups gjuggler aprasad ccots rvosa dchughes djkt FAB-lab G4ID Genetics-of-Gambling Berkeley Mycology
  • Levers and fulcrums: progress in cis-regulatory motif models
    Nature Methods, Vol. 5, No. 4., pp. 297-298.
    by Ewan Birney
    posted to cis-regulatory comparative_genomics methods motif prediction by stajich on 2008-04-07 16:11:40 as ** along with 3 people and 3 groups emptyhb pradiptaray isimpson EisenLab Berkeley Mycology Jarman Lab
  • The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics
    PLoS Biology, Vol. 1, No. 2. (1 November 2003), e45.
    by Lincoln D Stein, Zhirong Bao, Darin Blasiar, Thomas Blumenthal, Michael R Brent, Nansheng Chen, Asif Chinwalla, Laura Clarke, Chris Clee, Avril Coghlan, Alan Coulson, Peter D'eustachio, David H Fitch, Lucinda A Fulton, Robert E Fulton, Sam Griffiths-Jones, Todd W Harris, Ladeana W Hillier, Ravi Kamath, Patricia E Kuwabara, Elaine R Mardis, Marco A Marra, Tracie L Miner, Patrick Minx, James C Mullikin, Robert W Plumb, Jane Rogers, Jacqueline E Schein, Marc Sohrmann, John Spieth, Jason E Stajich, Chaochun Wei, David Willey, Richard K Wilson, Richard Durbin, Robert H Waterston
    posted to caenorhabditis comparative_genomics genome genome_evolution by stajich on 2006-12-08 21:09:37 as read along with 2 people and 1 group indigoviolet sujaikumar EisenLab
  • PhyloPat: an updated version of the phylogenetic pattern database contains gene neighborhood.
    Nucleic acids research (2 October 2008)
    by Tim Hulsen, Peter M A M Groenen, Jacob de Vlieg, Wynand Alkema
    posted to phylogenetics methods comparative_genomics bioinformatics by stajich on 2008-10-10 20:43:20 as ** along with 1 person and 1 group nuin Berkeley Mycology
  • Reliable prediction of regulator targets using 12 Drosophila genomes.
    Genome Res (7 November 2007)
    by Alexander Stark, Pouya Kheradpour, Sushmita Roy, Manolis Kellis
    posted to comparative_genomics fly by roys on 2008-03-03 06:38:47 as ** along with 7 people and 2 groups dpollard lp2 nklee maximilianh caseybrown emptyhb barwil EisenLab cis-regulatory-evolution
  • The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication
    Proceedings of the National Academy of Sciences (16 January 2008), 0707293105.
    by Aviva Presser, Michael B Elowitz, Manolis Kellis, Roy Kishony
    posted to comparative_genomics evolution gene_duplication protein_nw yeast by roys on 2008-01-17 19:30:58 as ** along with 3 people cjeans zwang phoenixzxl
  • Global alignment of multiple protein interaction networks with application to functional orthology detection
    Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2008), pp. 12763-12768.
    by Rohit Singh, Jinbo Xu, Bonnie Berger
    posted to protein_nw comparative_genomics by roys on 2008-09-03 00:33:52 as ** along with 4 people icq242500260 dakelley renatomilani bpcusack
  • Comparative analyses of multi-species sequences from targeted genomic regions.
    Nature, Vol. 424, No. 6950. (14 August 2003), pp. 788-793.
    by JW Thomas, JW Touchman, RW Blakesley, GG Bouffard, SM Beckstrom-Sternberg, EH Margulies, M Blanchette, AC Siepel, PJ Thomas, JC McDowell, B Maskeri, NF Hansen, MS Schwartz, RJ Weber, WJ Kent, D Karolchik, TC Bruen, R Bevan, DJ Cutler, S Schwartz, L Elnitski, JR Idol, AB Prasad, SQ Lee-Lin, VV Maduro, TJ Summers, ME Portnoy, NL Dietrich, N Akhter, K Ayele, B Benjamin, K Cariaga, CP Brinkley, SY Brooks, S Granite, X Guan, J Gupta, P Haghighi, SL Ho, MC Huang, E Karlins, PL Laric, R Legaspi, MJ Lim, QL Maduro, CA Masiello, SD Mastrian, JC McCloskey, R Pearson, S Stantripop, EE Tiongson, JT Tran, C Tsurgeon, JL Vogt, MA Walker, KD Wetherby, LS Wiggins, AC Young, LH Zhang, K Osoegawa, B Zhu, B Zhao, CL Shu, PJ De Jong, CE Lawrence, AF Smit, A Chakravarti, D Haussler, P Green, W Miller, ED Green
    posted to comparative_genomics by radek on 2005-09-06 09:35:44 as read along with 3 people and 1 group aprasad adepace AaronDarling EisenLab
  • Changes in alternative splicing of human and mouse genes are accompanied by faster evolution of constitutive exons.
    Mol Biol Evol, Vol. 22, No. 11. (November 2005), pp. 2198-2208.
    by BP Cusack, KH Wolfe
    posted to alternative_splicing comparative_genomics conserved evolution kaks by radek on 2005-12-12 12:41:26 as ** along with 3 people inesdesantiago Cortel hpaces
  • HyPhy: hypothesis testing using phylogenies
    Bioinformatics, Vol. 21, No. 5. (01 March 2005), pp. 676-679.
    by SLK Sergei, Simon DW Frost, Spencer V Muse
    posted to comparative_genomics evolution kaks tool by radek on 2005-12-16 10:50:32 as ** along with 4 people druvus operon Natasha Garamonfok
  • Comparative genomics, minimal gene-sets and the last universal common ancestor.
    Nat Rev Microbiol, Vol. 1, No. 2. (November 2003), pp. 127-136.
    by EV Koonin
    posted to bacteria comparative_genomics evolution genome minimal by radek on 2005-09-02 14:00:21 as *** along with 4 people and 2 groups ana dayjm Ayest gbart structural_bioinformatics Bioinformatics
  • Confidence in comparative genomics
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 199-200.
    by Elliott H Margulies
    posted to review msa comparative_genomics commentary by pengchy on 2008-10-04 02:44:20 as ** along with 5 people treangen djkt xingxu maximilianh boudinot
  • The Relationship Between Domain Duplication and Recombination
    Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365.
    by Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal
    posted to comparative_genomics duplication fold-evolution structure by martainn on 2008-01-16 14:04:51 as ** along with 5 people and 4 groups ana marcius tny cjeans mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Emulating membrane protein evolution by rational design.
    Science, Vol. 315, No. 5816. (2 March 2007), pp. 1282-1284.
    by M Rapp, S Seppälä, E Granseth, G von Heijne
    posted to comparative_genomics drug-efflux duplication evolution export expression by martainn on 2008-01-14 11:36:02 as ** along with 5 people and 1 group hc5428 bjorns grahamc netterpaladin viktor21614 ParkinsonLab_at_MaRS
  • Phage variation: understanding the behaviour of an accidental pathogen.
    Trends Microbiol, Vol. 13, No. 12. (December 2005), pp. 563-565.
    by ER Moxon, VA Jansen
    posted to comparative_genomics evolution phage pilus virulence by martainn on 2008-03-12 15:45:58 as **
  • Identification of Mycobacterium marinum macrophage infection mutants.
    Microb Pathog, Vol. 40, No. 4. (April 2006), pp. 139-151.
    by PK Mehta, AK Pandey, S Subbian, SH El-Etr, SL Cirillo, MM Samrakandi, JD Cirillo
    posted to comparative_genomics gram-positive virulence by martainn on 2008-02-28 17:47:06 as **
  • Identification of Mycobacterium marinum virulence genes using signature-tagged mutagenesis and the g