Tag comparative_genomics [at least 200 articles] Export

Recent papers classified by the tag comparative_genomics.

	Evolution of gene sequence and gene expression are not correlated in yeast [My Copy] Trends in Genetics, Vol. 24, No. 3. (March 2008), pp. 109-113. by I. Tirosh, N. Barkai posted to evolution comparative_genomics by roys on 2009-11-22 01:16:27 as along with 4 people daveGerrard djkt gjuggler huali
	Comprehensive splice-site analysis using comparative genomics. [My Copy] Nucleic acids research, Vol. 34, No. 14. (12 August 2006), pp. 3955-3967. by Nihar Sheth, Xavier Roca, Michelle L. Hastings, Ted Roeder, Adrian R. Krainer, Ravi Sachidanandam posted to splice_site_recognition nonconsensus_splice_sites comparative_genomics by ongenetics on 2009-11-20 15:56:03 as along with 6 people and 3 groups thegoose2 tharris aprasad indigoviolet penka ankur_iitg C. elegans / WormBase EisenLab Nie
	A genetic signature of interspecies variations in gene expression. [My Copy] Nature genetics, Vol. 38, No. 7. (18 July 2006), pp. 830-834. by Itay Tirosh, Adina Weinberger, Miri Carmi, Naama Barkai posted to expression_divergence comparative_genomics by roys on 2009-11-17 05:52:07 as along with 8 people and 4 groups daveGerrard cabbagezs cisevol adepace nickluscombe aswin cjeans caseybrown BergmanLab cis-regulatory-evolution EisenLab EBI-regulation
	Frequent gain and loss of functional transcription factor binding sites. [My Copy] PLoS computational biology, Vol. 3, No. 5. (1 May 2007), e99. by Scott W. Doniger, Justin C. Fay posted to tfbs evolution comparative_genomics by roys on 2009-11-17 05:45:30 as along with 12 people and 2 groups fenghezi lusk JustinCrocker pradiptaray brant dpollard sebastien_vigneau zwang maximilianh cisevol xili03 emptyhb EisenLab cis-regulatory-evolution
	Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication [My Copy] Genome Biology, Vol. 10, No. 10. (2009), R111. by Jeong H. Mun, Soo J. Kwon, Tae J. Yang, et al.Young J. Seol, Mina Jin, Jin A. Kim, Myung H. Lim, Jung S. Kim, Seunghoon Baek, Beom S. Choi, Hee J. Yu, Dae S. Kim, Namshin Kim, Ki B. Lim, Soo I. Lee, Jang H. Hahn, Yong P. Lim, Ian Bancroft, Beom S. Park posted to plants comparative_genomics by venancio on 2009-11-16 23:33:30 as along with 3 people mtruksa dandaman druvus
	MicrobesOnline: an integrated portal for comparative and functional genomics. [My Copy] Nucleic acids research (11 November 2009) by Paramvir S. Dehal, Marcin P. Joachimiak, Morgan N. Price, et al.John T. Bates, Jason K. Baumohl, Dylan Chivian, Greg D. Friedland, Katherine H. Huang, Keith Keller, Pavel S. Novichkov, Inna L. Dubchak, Eric J. Alm, Adam P. Arkin posted to integration functional_genomics database data-mining data comparative_genomics by kshameer on 2009-11-14 16:34:45 as along with 1 person neils
	Evolution of genes and genomes on the Drosophila phylogeny [My Copy] Nature, Vol. 450, No. 7167. (08 November 2007), pp. 203-218. posted to phylogeny genome evolution drosophila comparative_genomics by biomcgary on 2009-11-12 17:20:51 as along with 37 people and 5 groups aaltenburger nuttpo daveGerrard Anachff GustavoLacerda mqbphcw3 rpetrenko gwallau chica jlncdr aprasad gjuggler lizbiogen jbsaltz druvus pradiptaray pengchy operon tmmurali indigoviolet djkt timflutre stajich zwang Garamonfok lp2 CharlesM hpaces caseybrown emptyhb urgi noor PetrovLab isimpson balicea cisevol hdopazo Bioinformatics EisenLab Mycology BergmanLab Drosophila-Genetics-Genomics-2008
	Accurate gene-tree reconstruction by learning gene- and species-specific substitution rates across multiple complete genomes. [My Copy] Genome research, Vol. 17, No. 12. (7 December 2007), pp. 1932-1942. by Matthew D. Rasmussen, Manolis Kellis posted to phylogenetic_reconstruction phylogenetic_methods evolution comparative_genomics by roys on 2009-11-12 00:56:08 as along with 6 people and 1 group mmfonseca inquil druvus dpollard stajich caseybrown EisenLab
	Characterization of SCaMC-3-like/slc25a41, a novel calcium-independent mitochondrial ATP-Mg/Pi carrier. [My Copy] The Biochemical journal, Vol. 418, No. 1. (15 February 2009), pp. 125-133. by Javier Traba, Jorgina Satrústegui, Araceli del Arco posted to mitochondrial fold-evolution comparative_genomics carriers by martainn on 2009-11-10 16:07:49 as
	Assessment of the probabilities for evolutionary structural changes in protein folds. [My Copy] Bioinformatics (Oxford, England), Vol. 23, No. 7. (1 April 2007), pp. 832-841. by Juris Viksna, David Gilbert posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:56:35 as along with 1 person kluck
	Convergent evolution of domain architectures (is rare). [My Copy] Bioinformatics (Oxford, England) (7 December 2004) by Julian Gough posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:54:26 as along with 3 people and 2 groups matzke ana barry structural_bioinformatics Bioinformatics
	Domain tree-based analysis of protein architecture evolution. [My Copy] Molecular biology and evolution, Vol. 25, No. 2. (1 February 2008), pp. 254-264. by Kristoffer Forslund, Anna Henricson, Volker Hollich, Erik L. Sonnhammer posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:47:01 as along with 5 people calderonv jameswasmuth cjeans vinithepooh gulkur
	Modeling the evolution of protein domain architectures using maximum parsimony. [My Copy] Journal of molecular biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315. by Jessica H. Fong, Lewis Y. Geer, Anna R. Panchenko, Stephen H. Bryant posted to structure fold-evolution duplication comparative_genomics by martainn on 2009-11-10 15:45:08 as along with 9 people and 3 groups calderonv wiedenhoeft jameswasmuth icases marcius tny choonpeng redelings zwang BioinfoCIPF SGU-CIPF TNT
	Evolution of gene fusions: horizontal transfer versus independent events. [My Copy] Genome biology, Vol. 3, No. 5. (2002) by Itai Yanai, Yuri I. Wolf, Eugene V. Koonin posted to structure fold-evolution duplication comparative_genomics 1barrel by martainn on 2009-11-10 15:28:39 as
	Transmembrane protein domains rarely use covalent domain recombination as an evolutionary mechanism. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 10. (9 March 2004), pp. 3495-3497. by Yang Liu, Mark Gerstein, Donald M. Engelman posted to structure mitochondrial fold-evolution evolution comparative_genomics carriers by martainn on 2009-11-10 15:07:37 as
	MALIDUP: a database of manually constructed structure alignments for duplicated domain pairs. [My Copy] Proteins, Vol. 70, No. 4. (March 2008), pp. 1162-1166. by Hua Cheng, Bong-Hyun H. Kim, Nick V. Grishin posted to structure fold-evolution evolution duplication comparative_genomics 1barrel by martainn on 2009-11-10 14:40:39 as along with 1 person dimka
	Synonymous codon usage in Lactococcus lactis: mutational bias versus translational selection. [My Copy] Journal of biomolecular structure & dynamics, Vol. 21, No. 4. (February 2004), pp. 527-536. by S. K. Gupta, T. K. Bhattacharyya, T. C. Ghosh posted to lactis expression comparative_genomics by martainn on 2009-11-09 18:20:06 as
	Lactic acid bacteria as prime candidates for codon optimization. [My Copy] Biochemical and biophysical research communications, Vol. 312, No. 2. (12 December 2003), pp. 285-291. by Anders Fuglsang posted to methods lactis expression comparative_genomics by martainn on 2009-11-09 18:17:14 as
	Aligning multiple genomic sequences with the threaded blockset aligner. [My Copy] Genome research, Vol. 14, No. 4. (April 2004), pp. 708-715. by Mathieu Blanchette, W. James Kent, Cathy Riemer, et al.Laura Elnitski, Arian F. Smit, Krishna M. Roskin, Robert Baertsch, Kate Rosenbloom, Hiram Clawson, Eric D. Green, David Haussler, Webb Miller posted to evolution comparative_genomics alignments by roys on 2009-11-09 01:19:43 as along with 13 people and 1 group emptyhb nuin aprasad APRegier operon ujh indigoviolet csardas djkt yylin Neeperando maralena AlexanderPico EisenLab
	Local DNA topography correlates with functional noncoding regions of the human genome. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5925. (17 April 2009), pp. 389-392. by Stephen C. Parker, Loren Hansen, Hatice Ozel O. Abaan, Thomas D. Tullius, Elliott H. Margulies posted to topography noncoding_regions constraint comparative_genomics by daveGerrard to the group BergmanLab on 2009-11-04 15:15:09 as along with 38 people and 5 groups operon sujaikumar antonkratz pradiptaray roys gjuggler benjaminsb gdb hagechouchin443 tomtullius scjparker psique orzenil emptyhb ilyashl coela VGreiff APRegier myzhang pkonings akundaje athma absterga rpatward timflutre stajich bpcusack jbhiatt djkt dhlbh friendpine dpollard inesdesantiago JustinCrocker aprasad maximilianh idonaldson kshundyak Mycology structural_bioinformatics RockmanLab EisenLab cis-regulatory-evolution
	Stratification of co-evolving genomic groups using ranked phylogenetic profiles [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 355. by Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos Ouzounis posted to phylogenomics phylogenetics genomic_signatures comparative_genomics bioinformatics_software bioinformatics by CLH_1865 on 2009-11-02 20:10:15 as along with 2 people and 1 group stajich druvus Mycology
	Comparative Transcriptional and Genomic Analysis of Plasmodium falciparum Field Isolates [My Copy] PLoS Pathog, Vol. 5, No. 10. (30 October 2009), e1000644. by Margaret J. Mackinnon, Jinguang Li, Sachel Mok, et al.Moses M. Kortok, Kevin Marsh, Peter R. Preiser, Zbynek Bozdech posted to transcription_profiling infectious_disease genome-analysis comparative_genomics by kshameer on 2009-10-31 08:34:07 as along with 1 person GeeSharpMinor
	phyloXML: XML for evolutionary biology and comparative genomics [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 356. by Mira Han, Christian Zmasek posted to xml comparative_genomics by cisevol to the group BergmanLab on 2009-10-30 21:08:59 as along with 6 people operon kshameer Geknitics druvus phoenixzxl cmzmasek
	Comparative genomic analyses of the human fungal pathogens Coccidioides and their relatives. [My Copy] Genome research, Vol. 19, No. 10. (28 October 2009), pp. 1722-1731. by Thomas J. Sharpton, Jason E. Stajich, Steven D. Rounsley, et al.Malcolm J. Gardner, Jennifer R. Wortman, Vinita S. Jordar, Rama Maiti, Chinnappa D. Kodira, Daniel E. Neafsey, Qiandong Zeng, Chiung-Yu Y. Hung, Cody McMahan, Anna Muszewska, Marcin Grynberg, M. Alejandra Mandel, Ellen M. Kellner, Bridget M. Barker, John N. Galgiani, Marc J. Orbach, Theo N. Kirkland, Garry T. Cole, Matthew R. Henn, Bruce W. Birren, John W. Taylor posted to comparative_genomics coccidioides by bcondon on 2009-10-30 15:07:39 as along with 5 people and 1 group GustavoLacerda druvus ramonvidal kiekyon stajich Mycology
	Comparative genomics of the fungal pathogens Candida dubliniensis and Candida albicans [My Copy] Genome Research (10 September 2009) by Andrew P. Jackson, John A. Gamble, Tim Yeomans, et al.Gary P. Moran, David Saunders, David Harris, Martin Aslett, Jamie F. Barrell, Geraldine Butler, Francesco Citiulo, David C. Coleman, Piet W. J. de Groot, Tim J. Goodwin, Michael A. Quail, Jacqueline McQuillan, Carol A. Munro, Arnab Pain, Russell T. Poulter, Marie-AdÃ¨le Rajandream, Hubert Renauld, Martin J. Spiering, Adrian Tivey, Neil A. R. Gow, Barclay Barrell, Derek J. Sullivan, Matthew Berriman posted to genome-analysis genome comparative_genomics by kshameer on 2009-10-29 06:56:40 as along with 2 people and 1 group venancio stajich Mycology
	Patterns of Positive Selection in Six Mammalian Genomes [My Copy] PLoS Genet, Vol. 4, No. 8. (1 August 2008), e1000144. by Carolin Kosiol, Tomáš Vinař, Rute R. da Fonseca, et al.Melissa J. Hubisz, Carlos D. Bustamante, Rasmus Nielsen, Adam Siepel posted to rate_of_evolution paml mammals fdr expression_level expression_breadth comparative_genomics by daveGerrard on 2009-10-28 09:51:51 as along with 11 people Garamonfok ilyashl diamantis renewang skembel madreach bpcusack gjuggler cabbagesofdoom djkt hdopazo
	Gene expression intensity shapes evolutionary rates of the proteins encoded by the vertebrate genome. [My Copy] Genetics, Vol. 168, No. 1. (September 2004), pp. 373-381. by Sankar Subramanian, Sudhir Kumar posted to vertebrates rate_of_evolution expression comparative_genomics by daveGerrard on 2009-10-28 09:46:47 as along with 2 people and 1 group penka skumagai Nie
	Local conservation scores without a priori assumptions on neutral substitution rates [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Janis Dingel, Pavol Hanus, Niccolo Leonardi, Joachim Hagenauer, Juergen Zech, Jakob Mueller posted to rate_of_evolution comparative_genomics by daveGerrard on 2009-10-27 15:51:32 as along with 4 people and 2 groups aprasad maximilianh RamuAnandakrishnan cisevol cis-regulatory-evolution BergmanLab
	Accelerated sequence divergence of conserved genomic elements in Drosophila melanogaster [My Copy] Genome Res. (26 June 2008), gr.077131.108. by Alisha Holloway, David Begun, Adam Siepel, Katherine Pollard posted to sequence_vs_regulatory_evolution rate_of_evolution constraint comparative_genomics by daveGerrard on 2009-10-27 15:50:27 as along with 6 people and 2 groups valeriehilgers jbsaltz alhufton cisevol maximilianh bpcusack cis-regulatory-evolution BergmanLab
	G-compass: A web-based comparative genome browser between human and other vertebrate genomes [My Copy] Bioinformatics (21 October 2009), btp594. by Yoshihiro Kawahara, Ryuichi Sakate, Akihiro Matsuya, et al.Katsuhiko Murakami, Yoshiharu Sato, Hao Zhang, Takashi Gojobori, Takeshi Itoh, Tadashi Imanishi posted to visualisation human genome_browser comparative_genomics by idonaldson on 2009-10-26 13:30:16 as along with 4 people kshameer operon neils druvus
	Conservation and Evolution of Cis-Regulatory Systems in Ascomycete Fungi [My Copy] PLoS Biol, Vol. 2, No. 12. (9 November 2004), e398. by Audrey P. Gasch, Alan M. Moses, Derek Y. Chiang, Hunter B. Fraser, Mark Berardini, Michael B. Eisen posted to species_specific_nw regulatory_networks comparative_genomics by roys on 2009-10-20 05:38:59 as along with 6 people and 3 groups matted mbeisen tsackton nickluscombe lusk cisevol EisenLab EBI-regulation cis-regulatory-evolution
	Inferring gene regulatory networks from multiple microarray datasets [My Copy] Bioinformatics, Vol. 22, No. 19. (1 October 2006), pp. 2413-2420. by Yong Wang, Trupti Joshi, Xiang-Sun Zhang, Dong Xu, Luonan Chen posted to species_specific_nw comparative_genomics by roys on 2009-10-20 04:33:50 as along with 5 people antonkratz frohike jhatrimatri natstreet heliopais
	Comparative genomics. [My Copy] PLoS biology, Vol. 1, No. 2. (17 November 2003), e58. by Ross C. Hardison posted to review comparative_genomics by roys on 2009-10-20 03:09:02 as along with 7 people and 1 group rshe katholt aprasad axelon beatrizfernandez nklee Neeperando Microbial-Ecology
	Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease [My Copy] Nucl. Acids Res., Vol. 35, No. suppl_2. (13 July 2007), pp. W105-114. by Yue Lu, Xin He, Sheng Zhong posted to species_specific_nw species_data comparative_genomics by roys on 2009-10-18 20:21:02 as along with 3 people daforerog guhjy ghattem
	Cross species analysis of microarray expression data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. 1476-1483. by Yong Lu, Peter Huggins, Ziv Bar-Joseph posted to species_specific_nw comparative_genomics biological_networks by roys on 2009-10-16 22:39:39 as along with 12 people and 1 group jfr daveGerrard ptrobajo guhjy yaredo shikin dswan renatomilani rdiaz thomaskelder natstreet druvus Bioinformatics
	Natural history and evolutionary principles of gene duplication in fungi [My Copy] Nature, Vol. 449, No. 7158. (06 September 2007), pp. 54-61. by Ilan Wapinski, Avi Pfeffer, Nir Friedman, Aviv Regev posted to fungi comparative_genomics by GustavoLacerda on 2009-10-08 21:36:47 as along with 20 people and 4 groups Jporci bcondon biomcgary gdb schwartzjmc keb45 gjuggler aheilbut dpollard tny dchughes djkt stajich zwang lp2 tzhughes maximilianh pkm bpcusack dandaman EisenLab G4ID Genetics-of-Gambling Mycology
	MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family [My Copy] BMC Plant Biology, Vol. 9, No. 1. (29 September 2009), 123. by Olga Plechakova, Christine T. Dubreuil, Fabrice Benedet, et al.Marie Couderc, Alexandra Tinaut, Veronique Viader, Petra De Block, Perla Hamon, Claudine Campa, Alexandre de Kochko, Serge Hamon, Valerie Poncet posted to solanaceae_family rubiaceae_family ortholog ests diversity_studies comparative_genomics coffee_trees by ramonvidal on 2009-10-07 18:38:35 as
	A fungal phylogeny based on 82 complete genomes using the composition vector method [My Copy] BMC Evolutionary Biology, Vol. 9, No. 1. (10 August 2009), 195. by Hao Wang, Zhao Xu, Lei Gao, Bailin Hao posted to fungi evolution comparative_genomics by jamselem on 2009-10-05 13:39:55 as along with 4 people and 1 group tomt21 nlapalu stajich druvus Mycology
	The mechanism of transport by mitochondrial carriers based on analysis of symmetry [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 46. (18 November 2008), pp. 17766-17771. by Alan J. Robinson, Catherine Overy, Edmund R. S. Kunji posted to theory structure mitochondrial comparative_genomics channels carriers alignment by martainn on 2009-10-02 12:52:41 as along with 3 people ec430 girayenkavi kshundyak
	Discovery of regulatory elements in vertebrates through comparative genomics [My Copy] Nature Biotechnology, Vol. 23, No. 10. (06 October 2005), pp. 1249-1256. by Amol Prakash, Martin Tompa posted to tfbs review regulatory_elements comparative_genomics by idonaldson on 2009-09-23 09:02:20 as along with 3 people and 3 groups aprasad indigoviolet dchughes EisenLab G4ID Genetics-of-Gambling
	Comparative biology: beyond sequence analysis [My Copy] Current Opinion in Biotechnology, Vol. 18, No. 4. (9 August 2007), pp. 371-377. by I. Tirosh, Y. Bilu, N. Barkai posted to regulatory_nw comparative_genomics by roys on 2009-09-21 02:02:04 as along with 1 group Bioinformatics
	Comparative genomics of protoploid Saccharomycetaceae [My Copy] Genome Research, Vol. 19, No. 10. (12 October 2009), pp. 1696-1709. by Jean-Luc Souciet, Bernard Dujon, Claude Gaillardin, et al.Mark Johnston, Philippe V. Baret, Paul Cliften, David J. Sherman, Jean Weissenbach, Eric Westhof, Patrick Wincker, Claire Jubin, Julie Poulain, ValÃ©rie Barbe, BÃ©atrice SÃ©gurens, FranÃ§ois Artiguenave, VÃ©ronique Anthouard, Benoit Vacherie, Marie-Eve Val, Robert S. Fulton, Patrick Minx, Richard Wilson, Pascal Durrens, GÃ©raldine Jean, Christian Marck, Tiphaine Martin, Macha Nikolski, Thomas Rolland, Marie-Line Seret, Serge CasarÃ©gola, Laurence Despons, CÃ©cile Fairhead, Gilles Fischer, Ingrid Lafontaine, VÃ©ronique Leh, Marc Lemaire, Jacky de Montigny, CÃ©cile NeuvÃ©glise, AgnÃ¨s Thierry, Isabelle Blanc-Lenfle, Claudine Bleykasten, Julie Diffels, Emilie Fritsch, Lionel Frangeul, Adrien GoÃ«ffon, Nicolas Jauniaux, Rym Kachouri-Lafond, CÃ©lia Payen, Serge Potier, Lenka Pribylova, Christophe Ozanne, Guy-Franck Richard, Christine Sacerdot, Marie-Laure Straub, Emmanuel Talla posted to comparative_genomics by kiekyon on 2009-09-18 06:14:24 as along with 5 people and 3 groups biomcgary tapioka druvus ppgardne stajich ronbun_2009au Journal picks Mycology
	The Evolutionary Origin of Man Can Be Traced in the Layers of Defunct Ancestral Alpha Satellites Flanking the Active Centromeres of Human Chromosomes [My Copy] PLoS Genet, Vol. 5, No. 9. (11 September 2009), e1000641. by Valery A. Shepelev, Alexander A. Alexandrov, Yuri B. Yurov, Ivan A. Alexandrov posted to repeats origin_of_man comparative_genomics by mspivako to the group Journal picks on 2009-09-15 16:06:34 as along with 2 people marywaye djkt
	Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting [My Copy] PLoS Genet, Vol. 2, No. 10. (27 October 2006), e173. by Daniel A. Pollard, Venky N. Iyer, Alan M. Moses, Michael B. Eisen posted to phylogenetic_relationship drosophila comparative_genomics by mspivako to the group Journal picks on 2009-09-15 16:02:18 as along with 2 people emptyhb jri
	The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. [My Copy] Nucleic acids research, Vol. 33, No. 17. (2005), pp. 5691-5702. by Ross Overbeek, Tadhg Begley, Ralph M. Butler, et al.Jomuna V. Choudhuri, Han-Yu Y. Chuang, Matthew Cohoon, Valérie de Crécy-Lagard, Naryttza Diaz, Terry Disz, Robert Edwards, Michael Fonstein, Ed D. Frank, Svetlana Gerdes, Elizabeth M. Glass, Alexander Goesmann, Andrew Hanson, Dirk Iwata-Reuyl, Roy Jensen, Neema Jamshidi, Lutz Krause, Michael Kubal, Niels Larsen, Burkhard Linke, Alice C. McHardy, Folker Meyer, Heiko Neuweger, Gary Olsen, Robert Olson, Andrei Osterman, Vasiliy Portnoy, Gordon D. Pusch, Dmitry A. Rodionov, Christian Rückert, Jason Steiner, Rick Stevens, Ines Thiele, Olga Vassieva, Yuzhen Ye, Olga Zagnitko, Veronika Vonstein posted to psortb_proportions network_biology network_analysis genomics database comparative_genomics bacterial_genomics bact archaea by nyyu on 2009-09-04 22:28:07 as along with 5 people coela mbeeby barriot jwortman balajis
	Assisted assembly: how to improve a de novo genome assembly by using related species [My Copy] Genome Biology, Vol. 10, No. 8. (2009), R88. by Sante Gnerre, Eric Lander, Kerstin L. Toh, David Jaffe posted to comparative_genomics assembly by jamselem on 2009-09-03 08:31:38 as along with 17 people and 2 groups operon fstrozzi kiekyon torfinnnome dakelley err129 djkt darian APRegier thegoose danmaclean stajich natstreet neils druvus GustavoLacerda avilella Mycology Journal picks
	Multiple whole-genome alignments without a reference organism [My Copy] Genome Research, Vol. 19, No. 4. (28 April 2009), pp. 682-689. by Inna Dubchak, Alexander Poliakov, Andrey Kislyuk, Michael Brudno posted to comparative_genomics alignment by GustavoLacerda on 2009-08-21 14:07:58 as along with 12 people fstrozzi michaelbarton mlangill dakelley xwbcn Neeperando zwang nyyu djkt semrich azazello mhamada
	Sequencing and comparison of yeast species to identify genes and regulatory elements. [My Copy] Nature, Vol. 423, No. 6937. (15 May 2003), pp. 241-254. by Manolis Kellis, Nick Patterson, Matthew Endrizzi, Bruce Birren, Eric S. Lander posted to comparative_genomics by roys on 2009-08-12 05:19:46 as along with 10 people and 4 groups michaelbarton evaf RMGraze balajis opheliav dchughes dquest franklin azazello cisevol G4ID Genetics-of-Gambling MBLAB cis-regulatory-evolution
	Skewed genomic variability in strains of the toxigenic bacterial pathogen, Clostridium perfringens. [My Copy] Genome research, Vol. 16, No. 8. (August 2006), pp. 1031-1040. by Garry S. Myers, David A. Rasko, Jackie K. Cheung, et al.Jacques Ravel, Rekha Seshadri, Robert T. DeBoy, Qinghu Ren, John Varga, Milena M. Awad, Lauren M. Brinkac, Sean C. Daugherty, Daniel H. Haft, Robert J. Dodson, Ramana Madupu, William C. Nelson, M. J. Rosovitz, Steven A. Sullivan, Hoda Khouri, George I. Dimitrov, Kisha L. Watkins, Stephanie Mulligan, Jonathan Benton, Diana Radune, Derek J. Fisher, Helen S. Atkins, Tom Hiscox, B. Helen Jost, Stephen J. Billington, J. Glenn Songer, Bruce A. McClane, Richard W. Titball, Julian I. Rood, Stephen B. Melville, Ian T. Paulsen posted to 2006 bacteria comparative_genomics genome genome_organisation by hpaces on 2009-08-11 10:11:26 as
	Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatus [My Copy] PLoS Genet, Vol. 4, No. 4. (11 April 2008), e1000046. by Natalie D. Fedorova, Nora Khaldi, Vinita S. Joardar, et al.Rama Maiti, Paolo Amedeo, Michael J. Anderson, Jonathan Crabtree, Joana C. Silva, Jonathan H. Badger, Ahmed Albarraq, Sam Angiuoli, Howard Bussey, Paul Bowyer, Peter J. Cotty, Paul S. Dyer, Amy Egan, Kevin Galens, Claire M. Fraser-Liggett, Brian J. Haas, Jason M. Inman, Richard Kent, Sebastien Lemieux, Iran Malavazi, Joshua Orvis, Terry Roemer, Catherine M. Ronning, Jaideep P. Sundaram, Granger Sutton, Geoff Turner, J. Craig Venter, Owen R. White, Brett R. Whitty, Phil Youngman, Kenneth H. Wolfe, Gustavo H. Goldman, Jennifer R. Wortman, Bo Jiang, David W. Denning, William C. Nierman posted to comparative_genomics fungi by GustavoLacerda on 2009-08-10 00:13:43 as along with 3 people bcondon gillianturgeon jamselem

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evolution	86
bioinformatics	52
genome	34
bacteria	30
minimal_genome	30
phylogeny	30
essential_genes	27
evolutionary_genomics	27
drosophila	24
fungi	24
hgt	24
sequence_comparison	24
genome_evolution	21
protein_sequence	21
2007	18
human	17
review	17
orthology	15
phylogenetics	15
fold-evolution	14
bioinformatics_software	13
duplication	13
genomics	13
phylogenomics	12
regulatory	12
structure	12
alignment	11
bacterial_genomics	10
chimp	10
conservation	10
genome_paper	10
methods	10
cns	9
proteobacteria	9
psortb_proportions	9
yeast	9
annotation	8
cis-regulatory	8
ecology	8
genome_annotation	8
microbial_genomics	8
statistics	8
tools	8
virulence	8
2006	7
archaea	7
core_genome	7
ecological_genomics	7
element	7
expression	7
metagenomics	7
mirna	7
mutation_rate	7
orthologs	7
sequence	7
bacterial_evolution	6
benchmark	6
celegans	6
database	6
gammaproteobacteria	6
gene_prediction	6
lateral_gene_transfer	6
metabolism	6
natural_selection	6
prediction	6
tfbs	6
virulence_factor	6
whole_genome	6
bioinformatics_databases	5
enhancer	5
firmicutes	5
mcs	5
multiple_alignment	5
ortholog	5
pathogen	5
population_genetics	5
rice	5
streptococcus	5
synteny	5
vertebrate	5
clostridia	4
coccidioides	4
computational_predicition	4
fugu	4
gene_finding	4
genomes	4
gram-positive	4
in_silico	4
intron_delay	4
motif	4
mouse	4
pangenome	4
population_genomics	4
positive_selection	4
rate_of_evolution	4
repeats	4
saccharomyces	4
species_specific_nw	4
systematics	4
xml	4

Tag comparative_genomics [at least 200 articles] Export

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