Tag conformation [145 articles] Export

Recent papers classified by the tag conformation.

	Structure of a two-G-tetrad intramolecular G-quadruplex formed by a variant human telomeric sequence in K+ solution: insights into the interconversion of human telomeric G-quadruplex structures [My Copy] Nucl. Acids Res. (27 November 2009), gkp1029. by Zhenjiang Zhang, Jixun Dai, Elizabeth Veliath, Roger A. Jones, Danzhou Yang posted to tetrads tetrad telomeric_dna sequences gq-structure g-quadruplex conformation by jmrivort to the group G-quadruplex on 2009-11-28 19:21:09 as
	Computational Identification of Slow Conformational Fluctuations in Proteins [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Arvind Ramanathan, Pratul K. Agarwal posted to protein conformation by qshao on 2009-11-16 00:01:06 as
	Protein Segments with Conformationally Restricted Amino Acids Can Control Supramolecular Organization at the Nanoscale [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 7. (27 July 2009), pp. 1623-1629. by David Zanuy, Gema Ballano, Ana I. Jiménez, et al.Jordi Casanovas, Nurit Haspel, Carlos Cativiela, David Curcó, Ruth Nussinov, Carlos Alemán posted to protein conformation by zfekete on 2009-11-04 17:33:57 as along with 1 person higueruelo
	Conformational populations of ligand-sized molecules by replica exchange molecular dynamics and temperature reweighting [My Copy] Journal of Computational Chemistry, Vol. 9999, No. 9999. (2009), NA. by Hisashi Okumura, Emilio Gallicchio, Ronald M. Levy posted to replica_exchange populations nov09 molecular_dynamics ligand jcc conformation by klexa on 2009-11-04 15:36:26 as
	Conformational Sampling of Druglike Molecules with MOE and Catalyst: Implications for Pharmacophore Modeling and Virtual Screening [My Copy] Journal of Chemical Information and Modeling, Vol. 48, No. 9. (22 September 2008), pp. 1773-1791. by I-Jen Chen, Nicolas Foloppe posted to sampling pharmacophore nov09 moe conformation catalyst by pmung on 2009-11-04 00:06:13 as along with 1 person thanatos
	Conformation-dependent swinging of the matrix loop m2 of the mitochondrial Saccharomyces cerevisiae ADP/ATP carrier. [My Copy] Biochemistry, Vol. 44, No. 49. (13 December 2005), pp. 16310-16320. by Cécile Dahout-Gonzalez, Claire Ramus, Emmanuel Philippe P. Dassa, Anne-Christine C. Dianoux, Gérard Brandolin posted to conformation carriers brandolin by blasco_morozzo on 2009-10-27 09:24:22 as along with 1 person martainn
	A Structural Basis for the Regulatory Inactivation of DnaA [My Copy] Journal of Molecular Biology, Vol. 385, No. 2. (16 January 2009), pp. 368-380. by Q. Xu, D. McMullan, P. Abdubek, et al.T. Astakhova, D. Carlton, C. Chen, H. Chiu, T. Clayton, D. Das, M. Deller posted to hda dimer_interface crystal_structure conformation aaa_proteins by Asclepius on 2009-10-22 22:02:48 as along with 1 person and 1 group barry McCammon
	Elucidating Molecular Overlays from Pairwise Alignments Using a Genetic Algorithm [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 7. (27 July 2009), pp. 1847-1855. by Gareth Jones, Yinghong Gao, Carleton R. Sage posted to smallmol conformation bioactive by dimka on 2009-10-20 16:41:40 as along with 2 people reyez ima
	Estimation of the pore size of the large-conductance mechanosensitive ion channel of Escherichia coli. [My Copy] Biophysical journal, Vol. 73, No. 4. (October 1997), pp. 1925-1931. by C. C. Cruickshank, R. F. Minchin, A. C. Le Dain, B. Martinac posted to pore open-closed helix conformation by dimka on 2009-10-19 05:30:49 as
	Building alternate protein structures using the elastic network model [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Qingyi Yang, Kim A. Sharp posted to protein normal_modes modelling dynamics conformation by pansapiens on 2009-10-16 09:52:57 as along with 5 people and 2 groups klexa abovell sobolevnrm oteri middledomain baker-group Structural Biology Group TorVergata
	Reference strand conformational analysis (RSCA) is a valuable tool in identifying MHC-DRB sequences in three species of Aotus monkeys [My Copy] Immunogenetics, Vol. 58, No. 7. (1 July 2006), pp. 590-597. by Juan Baquero, Santiago Miranda, Oscar Murillo, et al.Heidy Mateus, Esperanza Trujillo, Carlos Suarez, Manuel Patarroyo, Carlos Parra-López posted to strand reference conformation analysis by owenlancaster on 2009-10-15 11:02:42 as
	IsoStar: A library of information about nonbonded interactions [My Copy] Journal of Computer-Aided Molecular Design, Vol. 11, No. 6. (1 November 1997), pp. 525-537. by Ian J. Bruno, Jason C. Cole, Jos P. M. Lommerse, R. Scott Rowland, Robin Taylor, Marcel L. Verdonk posted to program non-bonded ligand library isostar interaction conformation by dimka on 2009-10-13 17:22:43 as
	Lipid Protein Interactions Couple Protonation to Conformation in a Conserved Cytosolic Domain of G Protein-coupled Receptors [My Copy] Journal of Biological Chemistry, Vol. 284, No. 42. (16 October 2009), pp. 28801-28809. by Sineej Madathil, Karim Fahmy posted to conformation by carlosjavierna on 2009-10-09 21:36:36 as
	Computation of Conformational Coupling in Allosteric Proteins [My Copy] PLoS Comput Biol, Vol. 5, No. 8. (28 August 2009), e1000484. by Brian A. Kidd, David Baker, Wendy E. Thomas posted to sep09 plos coupling conformation allosteric_protein by klexa on 2009-10-07 13:44:49 as along with 6 people and 1 group sobolevnrm oteri boris_aguilar bmduggan barry zwang McCammon
	Assessing the performance of OMEGA with respect to retrieving bioactive conformations. [My Copy] Journal of molecular graphics & modelling, Vol. 21, No. 5. (March 2003), pp. 449-462. by Jonas Boström, Jeremy R. Greenwood, Johan Gottfries posted to methods ligand conformation by dimka on 2009-10-06 16:30:36 as
	Solvation and Hydrogen Bonding in Alanine- and Glycine-Containing Dipeptides Probed Using Solution- and Solid-State NMR Spectroscopy [My Copy] Journal of the American Chemical Society, Vol. 131, No. 27. (15 July 2009), pp. 9579-9589. by Manasi P. Bhate, Jaie C. Woodard, Manish A. Mehta posted to spectroscopy peptide conformation by yzlab on 2009-10-05 02:40:34 as along with 2 people and 1 group carlosjavierna qaiser_fatmi Chang group
	Subtype Polymorphisms Among HIV-1 Protease Variants Confer Altered Flap Conformations and Flexibility [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Jamie L. Kear, Mandy E. Blackburn, Angelo M. Veloro, Ben M. Dunn, Gail E. Fanucci posted to jacs hivp flexibility conformation 2009 by klexa on 2009-09-29 23:03:26 as
	Switchable DNA interfaces for the highly sensitive detection of label-free DNA targets [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 44. (30 October 2007), pp. 17364-17369. by Ulrich Rant, Kenji Arinaga, Simon Scherer, et al.Erika Pringsheim, Shozo Fujita, Naoki Yokoyama, Marc Tornow, Gerhard Abstreiter posted to switchable sensitive_detection nucleic_acids molecular_dynamics hybridization free_dna fluorescence dna_targets depolarization conformation amplitude by sigoldberg1 on 2009-09-08 07:36:23 as
	Nucleotide-dependent conformational states of actin [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 31. (4 August 2009), pp. 12723-12728. by Jim Pfaendtner, Davide Branduardi, Michele Parrinello, Thomas D. Pollard, Gregory A. Voth posted to nucleotide conformation actin by pmung on 2009-09-08 01:54:27 as along with 3 people and 2 groups okapi anuragsethi barry structural_bioinformatics McCammon
	Probing the Dynamics of a Protein Hydrophobic Core by Deuteron Solid-State Nuclear Magnetic Resonance Spectroscopy [My Copy] Journal of the American Chemical Society, Vol. 0, No. 0. (0000) by Liliya Vugmeyster, Dmitry Ostrovsky, Joseph J. Ford, et al.Sarah D. Burton, Andrew S. Lipton, Gina L. Hoatson, Robert L. Vold posted to protein nmr conformation by whitead to the group Jiang Research Group on 2009-09-03 23:44:03 as
	Conformational selection or induced fit: A flux description of reaction mechanism [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 33. (18 August 2009), pp. 13737-13741. by Gordon G. Hammes, Yu-Chu Chang, Terrence G. Oas posted to induced fit conformation by pmung on 2009-08-26 21:00:48 as along with 5 people and 1 group okapi chemrahul82 xdeupi anuragsethi barry McCammon
	Conformational rearrangements of an archaeal chaperonin upon ATPase cycling [My Copy] Current Biology, Vol. 10, No. 7. (01 April 2000), pp. 405-408. by Irina Gutsche, Jörg Holzinger, Manfred Rößle, Hermann Heumann, Wolfgang Baumeister, Roland P. May posted to cryo-em conformation chaperonin atpase by yanjiang on 2009-08-25 05:03:54 as
	Small Molecule Conformational Preferences Derived from Crystal Structure Data. A Medicinal Chemistry Focused Analysis [My Copy] Journal of Chemical Information and Modeling, Vol. 48, No. 1. (1 January 2008), pp. 1-24. by Ken A. Brameld, Bernd Kuhn, Deborah C. Reuter, Martin Stahl posted to smallmol pdb conformation ccdc by dimka on 2009-08-20 18:19:49 as along with 2 people pslee daevans
	Experimental and Theoretical Charge Density Study of the Neurotransmitter Taurine [My Copy] Chemistry - A European Journal, Vol. 9, No. 5. (2003), pp. 1075-1084. by David E. Hibbs, Charles J. Austin-Woods, James A. Platts, Jacob Overgaard, Peter Turner posted to taurine crystal conformation by qshao on 2009-08-17 16:39:42 as
	Conformational Study of Taurine in the Gas Phase† [My Copy] The Journal of Physical Chemistry A, Vol. 0, No. 0. (0000) by Vanessa Cortijo, M. Eugenia Sanz, Juan C. López, José L. Alonso posted to taurine conformation by qshao on 2009-08-17 16:23:51 as along with 1 person Gershom
	Effect of Input Differences on the Results of Docking Calculations [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 7. (27 July 2009), pp. 1704-1714. by Miklos Feher, Christopher I. Williams posted to accuracy conformation corina docking geometry input ligand poses sensitivity structure x-ray by zimbo1 on 2009-07-28 08:06:15 as along with 1 person ima
	A dictionary for protein side-chain entropies from NMR order parameters. [My Copy] Journal of the American Chemical Society, Vol. 131, No. 21. (3 June 2009), pp. 7226-7227. by D. W. Li, R. Brüschweiler posted to conformation entropy nmr protein simulation by krapnik on 2009-07-09 07:06:26 as along with 3 people kintoki anna_yershova carlosjavierna
	SPICKER: a clustering approach to identify near-native protein folds. [My Copy] J Comput Chem, Vol. 25, No. 6. (30 April 2004), pp. 865-871. by Y. Zhang, J. Skolnick posted to 2004 clustering conformation folding protein spicker tasser by klexa on 2009-06-29 15:29:11 as along with 4 people and 1 group oteri j3xucite iakes nigham Structural Biology Group TorVergata
	Relating protein conformational changes to packing efficiency and disorder. [My Copy] Protein science : a publication of the Protein Society, Vol. 18, No. 6. (June 2009), pp. 1230-1240. by N. Bhardwaj, M. Gerstein posted to 2009 bioinformatics conformation disorder dynamics efficiency packing protein quasiharmonic_models structure by klexa on 2009-06-29 15:12:08 as along with 3 people and 2 groups skywalkerus02 sobolevnrm barry structural_bioinformatics McCammon
	Conformational energy penalties of protein-bound ligands [My Copy] Journal of Computer-Aided Molecular Design, Vol. 12, No. 4. (1 July 1998), pp. 383-383. by Jonas Boström, Per-Ola Norrby, Tommy Liljefors posted to conformation docking protein_structure by JALumley on 2009-06-18 10:51:15 as
	Conformational Diversity of Ligands Bound to Proteins [My Copy] Journal of Molecular Biology, Vol. 356, No. 4. (3 March 2006), pp. 928-944. by Gareth R. Stockwell, Janet M. Thornton posted to conformation docking interaction_analysis protein_structure by JALumley on 2009-06-18 10:44:10 as along with 7 people ubcg08l BragilMassoud apaydin kuhn bilab grottenolm thanatos
	Synthesis, Conformation, and Biological Characterization of a Sugar Derivative of Morphine that is a Potent, Long-Lasting, and Nontolerant Antinociceptive [My Copy] Journal of Medicinal Chemistry, Vol. 0, No. 0. (0000) by Gemma Arsequell, Mariona Salvatella, Gregorio Valencia, et al.Alfonso Fernández-Mayoralas, Marco Fontanella, Chiara Venturi, Jesús Jiménez-Barbero, Ezequiel Marrón, Raquel E. Rodríguez posted to conformation morphine pain by alfons on 2009-05-21 14:10:53 as along with 1 person alexhakkinen
	Changes in the conformation of influenza virus hemagglutinin at the pH optimum of virus-mediated membrane fusion [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 79, No. 4. (February 1982), pp. 968-972. by J. J. Skehel, P. M. Bayley, E. B. Brown, et al.S. R. Martin, M. D. Waterfield, J. M. White, I. A. Wilson, D. C. Wiley posted to conformation fusion hemagglutinin influenza low-ph by dsmueller on 2009-05-17 23:37:29 as
	Conformational changes of the flavivirus E glycoprotein. [My Copy] Structure (London, England : 1993), Vol. 12, No. 9. (September 2004), pp. 1607-1618. by Ying Zhang, Wei Zhang, Steven Ogata, et al.David Clements, James H. Strauss, Timothy S. Baker, Richard J. Kuhn, Michael G. Rossmann posted to conformation envelope flavivirus low-ph protein by dsmueller on 2009-05-17 22:11:57 as along with 1 person feltesm
	Membrane fusion activity of the influenza virus hemagglutinin. The low pH-induced conformational change [My Copy] J. Biol. Chem., Vol. 260, No. 5. (10 March 1985), pp. 2973-2981. by R. W. Doms, A. Helenius, J. White posted to conformation hemagglutinin influenza low-ph by dsmueller on 2009-05-17 22:07:26 as
	Distinguishing between Bioactive and Modeled Compound Conformations through Mining of Emerging Chemical Patterns [My Copy] J. Chem. Inf. Model., Vol. 48, No. 9. (13 August 2008), pp. 1747-1753. by Jens Auer, Jürgen Bajorath posted to conformation by JALumley on 2009-05-14 13:12:56 as along with 3 people massivemayhem sschurer zimbo1
	Can we separate active from inactive conformations? [My Copy] Journal of computer-aided molecular design, Vol. 16, No. 2. (February 2002), pp. 105-112. by D. J. Diller, K. M. Merz posted to conformation by JALumley on 2009-05-14 13:11:18 as along with 2 people hryk massivemayhem
	An analysis of conformational changes on proteinprotein association: implications for predictive docking [My Copy] Protein Eng., Vol. 12, No. 4. (1 April 1999), pp. 271-283. by Matthew J. Betts, Michael J. E. Sternberg posted to complex conformation docking prediction by mijogiffin on 2009-05-01 18:54:48 as along with 4 people boris_aguilar bicko ffranca chad_davis
	Generating Ensemble Averages for Small Proteins from Extended Conformations by Monte Carlo Simulations [My Copy] Physical Review Letters, Vol. 85, No. 1. (Jul 2000), pp. 206-209. by Philippe Derreumaux posted to conformation journal protein_structure by joseph_x_zhou on 2009-04-21 21:00:48 as
	Quantitative analysis of chromosome conformation capture assays (3C-qPCR). [My Copy] Nature protocols, Vol. 2, No. 7. (July 2007), pp. 1722-1733. by Hélène Hagège, Petra Klous, Caroline Braem, et al.Erik Splinter, Job Dekker, Guy Cathala, Wouter de Laat, Thierry Forné posted to 3c-qpcr capture chromosome conformation qpcr quantitative by fpattyn on 2009-04-21 15:11:08 as along with 1 person TorstenWaldminghaus
	Protein Dynamism and Evolvability [My Copy] Science, Vol. 324, No. 5924. (10 April 2009), pp. 203-207. by Nobuhiko Tokuriki, Dan S. Tawfik posted to and conformation dynamics evolution plasticity protein structural by ramanuja on 2009-04-17 11:08:27 as along with 20 people and 3 groups dfdong tomhebbron anuragsethi ahmetbakan kevinchannon klexa lauresultan dbikard ibuch ramiro2k barry pablocarb sobolevnrm biomcgary hsekiguc VGreiff phoenixzxl zwang jdoconnell paulschlesinger structural_bioinformatics McCammon baker-group
	Statistical analysis of RNA backbone. [My Copy] IEEE/ACM Trans Comput Biol Bioinform, Vol. 3, No. 1. (r 2006), pp. 33-46. by E. Hershkovitz, G. Sapiro, A. Tannenbaum, L. D. Williams posted to backbone bioinformatics conformation rna by svozil on 2009-03-25 14:40:18 as along with 2 people dgront emidio_capriotti
	RNA backbone is rotameric. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 13904-13909. by L. J. Murray, W. B. Arendall, D. C. Richardson, J. S. Richardson posted to backbone bioinformatics conformation rna rotameric by svozil on 2009-03-25 13:42:29 as along with 3 people and 3 groups reyez marcius condon beta BioinfoCIPF SGU-CIPF
	RNA backbone: consensus all-angle conformers and modular string nomenclature (an RNA Ontology Consortium contribution). [My Copy] RNA (New York, N.Y.), Vol. 14, No. 3. (March 2008), pp. 465-481. by J. S. Richardson, B. Schneider, L. W. Murray, et al.G. J. Kapral, R. M. Immormino, J. J. Headd, D. C. Richardson, D. Ham, E. Hershkovits, L. D. Williams, K. S. Keating, A. M. Pyle, D. Micallef, J. Westbrook, H. M. Berman, posted to backbone bioinformatics bohdan conformation rna roc by svozil on 2009-03-25 13:40:42 as along with 1 person reyez
	RNA conformational classes. [My Copy] Nucleic Acids Res, Vol. 32, No. 5. (2004), pp. 1666-1677. by B. Schneider, Z. Morávek, H. M. Berman posted to backbone bioinformatics bohdan conformation rna by svozil on 2009-03-25 13:39:03 as along with 2 people and 2 groups marcius emidio_capriotti BioinfoCIPF SGU-CIPF
	Macromolecular Modeling with Rosetta [My Copy] Annual Review of Biochemistry, Vol. 77, No. 1. (2008), pp. 363-382. by Rhiju Das, David Baker posted to conformation software by krapnik on 2009-03-25 12:10:52 as along with 9 people bmduggan choonpeng mijam kgutwin carlk phoenixzxl flbarroso saunders gisle
	Conformational Stability and Membrane Interaction of the Full-Length Ectodomain of HIV-1 gp41: Implication for Mode of Action† [My Copy] Biochemistry, Vol. 0, No. 0. (0000) by Naama Lev, Yael Fridmann-Sirkis, Lior Blank, et al.Arkady Bitler, Raquel F. Epand, Richard M. Epand, Yechiel Shai posted to conformation fusion gp41 hiv-1 interaction lev09pdf membrane by paulschlesinger on 2009-03-23 01:26:43 as
	Single-molecule FRET measures bends and kinks in DNA [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 47. (25 November 2008), pp. 18337-18342. by Anna K. Woźniak, Gunnar F. Schröder, Helmut Grubmüller, Claus A. Seidel, Filipp Oesterhelt posted to conformation dna smfret by haisent on 2009-03-19 15:44:23 as along with 1 person lukzky
	Using quantum mechanics to improve estimates of amino acid side chain rotamer energies [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 71, No. 4. (2008), pp. 1637-1646. by Douglas P. Renfrew, Glenn L. Butterfoss, Brian Kuhlman posted to conformation dft force-field hf mp2 quantum_chemical side-chain validation by krapnik on 2009-02-21 18:32:09 as along with 1 person Lombardo_7
	Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: Application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K [My Copy] Proceedings of the National Academy of Sciences, Vol. 96, No. 5. (2 March 1999), pp. 2025-2030. by Jooyoung Lee, Adam Liwo, Harold A. Scheraga posted to coarse-graining conformation folding force-field potential protein residue-residue simulation united-residue by krapnik on 2009-02-21 15:25:23 as along with 1 person newton1234

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protein	38
structure	13
peptide	12
folding	11
docking	10
simulation	10
dna	9
free-energy	9
modeling	9
nmr	9
potential	9
interactions	8
2009	7
dynamics	7
free_energy	7
ligand	7
molecular_dynamics	7
residue-residue	7
substance_p	7
surface	7
binding	6
brushes	6
coarse-graining	6
flexibility	6
polymer	6
water	6
backbone	5
bioinformatics	5
cd	5
protein-ligand	5
sampling	5
allostery	4
helix	4
influenza	4
interaction	4
mdanalysis	4
nov09	4
proteomics	4
rna	4
sep09	4
analysis	3
cheminformatics	3
clustering	3
dft	3
ensembles	3
entropy	3
evolution	3
force-field	3
force_field	3
forcefield	3
induced	3
kirbac31	3
low-ph	3
md	3
membrane	3
molecular	3
mp2	3
protein_dynamics	3
protein_structure	3
secondary-structure	3
software	3
tfe	3
validation	3
2006	2
actin	2
aggregation	2
apolipoprotein	2
beta-strand	2
binding_affinity	2
bohdan	2
catalyst	2
coupling	2
cranial	2
cruciate	2
dmso	2
femur	2
fit	2
fluorescence	2
hemagglutinin	2
jacs	2
ligament	2
materials	2
methodology	2
modelling	2
moe	2
morphology	2
nma	2
nucleotide	2
plos	2
prediction	2
protein_flexibility	2
proximal	2
radiography	2
replica_exchange	2
smallmol	2
surface-modification	2
taurine	2
tibia	2
torsion_angles	2
x-ray	2

Tag conformation [145 articles] Export

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