Tag conformational [77 articles] Export

Recent papers classified by the tag conformational.

	Conformational transition of amyloid Î²-peptide [My Copy] In Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 15. (12 April 2005), pp. 5403-5407. by Yechun Xu, Jianhua Shen, Xiaomin Luo, et al.Weiliang Zhu, Kaixian Chen, Jianpeng Ma, Hualiang Jiang posted to transition of conformational abeta-peptide by chemrahul82 on 2009-12-07 23:49:10 as
	Docking Ligands into Flexible and Solvated Macromolecules. 5. Force-Field-Based Prediction of Binding Affinities of Ligands to Proteins [My Copy] Journal of Chemical Information and Modeling, Vol. 49, No. 11. (23 November 2009), pp. 2564-2571. by Pablo Englebienne, Nicolas Moitessier posted to tuning structures scoring roc proteinligand protein predict inactives ensembles empirical discriminate decoys crystal cross-dock conformational coefficients binding affinities actives by zimbo1 on 2009-11-27 07:49:48 as along with 2 people middledomain nickolay
	Application of nonlinear dimensionality reduction to characterize the conformational landscape of small peptides. [My Copy] Proteins (7 July 2009) by Hernán Stamati, Cecilia Clementi, Lydia E. Kavraki posted to peptides landscape dimensionality_reduction conformational by apaydin on 2009-10-20 20:02:21 as
	The role of dynamic conformational ensembles in biomolecular recognition [My Copy] Nature Chemical Biology, Vol. 5, No. 11. (10 October 2009), pp. 789-796. by David D. Boehr, Ruth Nussinov, Peter E. Wright posted to interactions induced_fit ensembles conformational by ubcg08l on 2009-10-20 09:45:00 as along with 3 people skywalkerus02 higueruelo paulschlesinger
	Conformational disorder of conjugated polymers [My Copy] The Journal of Chemical Physics, Vol. 125, No. 15. (2006), 154903. by Sebastian Westenhoff, Wichard J. D. Beenken, Arkady Yartsev, Neil C. Greenham posted to transfer foerster disorder conformational by schumi on 2009-10-15 16:43:14 as
	Structural plasticity and catalysis regulation of a thermosensor histidine kinase. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 38. (22 September 2009), pp. 16185-16190. by Daniela Albanesi, Mariana Martín, Felipe Trajtenberg, et al.María C. Mansilla, Ahmed Haouz, Pedro M. Alzari, Diego de Mendoza, Alejandro Buschiazzo posted to conformational by ubcg08l on 2009-10-15 09:48:39 as
	Direct single-molecule observation of a protein living in two opposed native structures. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 25. (23 June 2009), pp. 10153-10158. by Yann Gambin, Alexander Schug, Edward A. Lemke, et al.Jason J. Lavinder, Allan Chris C. Ferreon, Thomas J. Magliery, José N. Onuchic, Ashok A. Deniz posted to fret conformational by quanwang on 2009-09-23 19:56:33 as along with 6 people and 1 group dbikard yyfwuhan cnegron sobolevnrm paulschlesinger samjlord moernerlab
	Conformational changes in BCL-2 pro-survival proteins determine their capacity to bind ligands [My Copy] Journal of Biological Chemistry (2 September 2009) by Erinna F. Lee, Peter E. Czabotar, Hong Yang, et al.Brad E. Sleebs, Guillaume Lessene, Peter M. Colman, Brian J. Smith, Walter D. Fairlie posted to ligands lee09apdf conformational changes binding bcl-2 by paulschlesinger on 2009-09-20 01:56:08 as
	Slow Transition between Two β-Strand Registers Is Dictated by Protein Unfolding [My Copy] Journal of the American Chemical Society, Vol. 131, No. 32. (19 August 2009), pp. 11306-11307. by Matthew R. Evans, Kevin H. Gardner posted to protein folding conformational change by acpan on 2009-09-01 07:15:30 as
	Building-block approach for determining low-frequency normal modes of macromolecules [My Copy] Proteins: Structure, Function, and Genetics, Vol. 41, No. 1. (2000), pp. 1-7. by Florence Tama, Florent X. Gadea, Osni Marques, Yves-Henri Sanejouand posted to rtb rotation-translation rigid motion method conformational collective change bodies b-factors by sanejouand on 2009-08-31 17:32:25 as
	Conformational change of proteins arising from normal mode calculations [My Copy] Protein Eng., Vol. 14, No. 1. (1 January 2001), pp. 1-6. by Florence Tama, Yves-Henri Sanejouand posted to shear protein normal motion modes model hinge degree conformational collectivity collective change bending by sanejouand on 2009-08-31 17:23:17 as along with 7 people and 1 group sobolevnrm baaden aqeel ruvido martainn saravan nigham baker-group
	Developing a dynamic pharmacophore model for HIV-1 integrase. [My Copy] Journal of medicinal chemistry, Vol. 43, No. 11. (1 June 2000), pp. 2100-2114. by H. A. Carlson, K. M. Masukawa, K. Rubins, et al.F. D. Bushman, W. L. Jorgensen, R. D. Lins, J. M. Briggs, J. A. McCammon posted to hotspots fragments conformational by ubcg08l on 2009-08-27 08:54:01 as along with 3 people apaydin dimka blackbart
	Experimental determination of upper bound for transition path times in protein folding from single-molecule photon-by-photon trajectories [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 29. (21 July 2009), pp. 11837-11844. by Hoi S. Chung, John M. Louis, William A. Eaton posted to fret dynamics conformational by quanwang on 2009-08-18 18:45:09 as along with 5 people and 1 group yanjiang doktornoe apaydin paulschlesinger samjlord moernerlab
	Conformational studies of peptides representing a segment of TM7 from H+-VO-ATPase in SDS micelles [My Copy] European Biophysics Journal by Afonso Duarte, Edwin de Jong, Rob Koehorst, Marcus Hemminga posted to transmembrane studies sds peptides micelles h-atpase duart09pdf conformational by paulschlesinger on 2009-08-17 01:37:46 as
	Induction of the tetracycline repressor: Characterization by molecular-dynamics simulations. [My Copy] Proteins (19 June 2009) by Florian Haberl, Harald Lanig, Timothy Clark posted to allostery conformational by ubcg08l on 2009-08-10 12:04:16 as
	Conformational Free Energy Surface of α-N-Acetylneuraminic Acid: An Interplay Between Hydrogen Bonding and Solvation [My Copy] The Journal of Physical Chemistry B, Vol. 113, No. 28. (16 July 2009), pp. 9589-9594. by Vojtěch Spiwok, Igor Tvaroška posted to conformational conformational-free-energy-surface conformations conformer by carlosjavierna on 2009-07-11 14:55:35 as along with 1 person willard
	Probing Conformational Changes of Human DNA Polymerase λ using Mass Spectrometry-Based Protein Footprinting☆ [My Copy] Journal of Molecular Biology, Vol. 390, No. 3. (17 July 2009), pp. 368-379. by Jason D. Fowler, Jessica A. Brown, Mamuka Kvaratskhelia, Zucai Suo posted to conformational conformational-change by carlosjavierna on 2009-07-07 04:03:08 as
	Molecular dynamics simulation study on conformational behavior of Aβ(1–40) and Aβ(1–42) in water and methanol [My Copy] Journal of Molecular Structure: THEOCHEM, Vol. 907, No. 1-3. (15 August 2009), pp. 51-56. by Cao Yang, Xiaolei Zhu, Jinyu Li, Kai Chen posted to conformational conformational-behavior molecular-dynamics molecular-dynamics-simulations by carlosjavierna on 2009-07-07 03:43:12 as
	Interplay of α-synuclein binding and conformational switching probed by single-molecule fluorescence [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 14. (7 April 2009), pp. 5645-5650. by Allan C. Ferreon, Yann Gambin, Edward A. Lemke, Ashok A. Deniz posted to conformational curvature ferron09pdf micelle protein switch by paulschlesinger on 2009-07-07 02:27:09 as along with 3 people and 1 group quanwang itmeson samjlord moernerlab
	l-Alanyl-l-alanine Conformational Changes Induced by pH As Monitored by the Raman Optical Activity Spectra [My Copy] The Journal of Physical Chemistry A, Vol. 113, No. 27. (9 July 2009), pp. 7760-7768. by Jiří Šebek, Josef Kapitán, Jaroslav Šebestík, Vladimír Baumruk, Petr Bouř posted to ala alanine conformational conformational-change by carlosjavierna on 2009-07-06 02:04:14 as
	Effects of Hydration on the Conformational Energy Landscape of the Pentapeptide Met-Enkephalin [My Copy] Journal of Chemical Theory and Computation, Vol. 0, No. 0. (0000) by L. Ramya, N. Gautham posted to conformational conformational-energy-landscape conformations by carlosjavierna on 2009-07-05 19:03:19 as
	Conformation Dependence of DNA Exciton Parentage [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by E. B. Starikov, G. Cuniberti, Shigenori Tanaka posted to conformational by carlosjavierna on 2009-07-05 18:20:38 as
	Searching the Conformational Space of Cyclic β-Amino Acid Peptides [My Copy] The Journal of Physical Chemistry B, Vol. 0, No. 0. (0000) by Fredy Sussman, M. Carmen Villaverde, Juan C. Estévez, Ramón J. Estévez posted to conformational conformational-states by carlosjavierna on 2009-07-05 17:56:09 as
	Conformational dynamics of the inner pore helix of voltage-gated potassium channels. [My Copy] The Journal of chemical physics, Vol. 130, No. 21. (7 June 2009) by S. Choe, M. Grabe posted to activaiton choe09pdf conformational dynamics pore by paulschlesinger on 2009-06-29 02:04:19 as
	Development of Quantum Chemistry-Based Force Fields for Poly(ethylene oxide) with Many-Body Polarization Interactions [My Copy] The Journal of Physical Chemistry B, Vol. 107, No. 28. (1 July 2003), pp. 6801-6812. by Oleg Borodin, Grant D. Smith posted to conformational energies interactions many-bodied polarizable polymers by j2mortimer on 2009-06-02 20:22:46 as
	Conformational analysis from crystallographic data using conceptual clustering [My Copy] Acta Crystallographica Section B, Vol. 52, No. 3. (Jun 1996), pp. 535-549. by D. Conklin, S. Fortier, J. I. Glasgow, F. H. Allen posted to clustering conformational by ubcg08l on 2009-05-11 10:43:45 as
	Conformational Diversity of Ligands Bound to Proteins [My Copy] Journal of Molecular Biology, Vol. 356, No. 4. (3 March 2006), pp. 928-944. by Gareth R. Stockwell, Janet M. Thornton posted to clustering conformational by ubcg08l on 2009-05-11 09:59:06 as along with 7 people JALumley BragilMassoud apaydin kuhn bilab grottenolm thanatos
	Protein conformational landscapes: energy minimization and clustering of a long molecular dynamics trajectory. [My Copy] Proteins, Vol. 23, No. 1. (September 1995), pp. 97-110. by J. M. Troyer, F. E. Cohen posted to clustering conformational by ubcg08l on 2009-05-11 09:55:25 as along with 1 person mleis
	Protein conformational space in higher order phi-Psi maps. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 3. (18 January 2005), pp. 618-621. by G. E. Sims, I. G. Choi, S. H. Kim posted to clustering conformational by ubcg08l on 2009-05-11 09:45:58 as along with 2 people dgront tny
	Illuminating the mechanistic roles of enzyme conformational dynamics [My Copy] Proceedings of the National Academy of Sciences, Vol. 104, No. 46. (13 November 2007), pp. 18055-18060. by Jeffrey A. Hanson, Karl Duderstadt, Lucas P. Watkins, et al.Sucharita Bhattacharyya, Jason Brokaw, Jhih-Wei Chu, Haw Yang posted to conformational dynamics protein by quanwang on 2009-05-11 07:50:38 as along with 6 people and 2 groups kjell joseph_x_zhou toerst barry sobolevnrm biehl protein_Dyn baker-group
	Docking Ligands into Flexible and Solvated Macromolecules. 3. Impact of Input Ligand Conformation, Protein Flexibility, and Water Molecules on the Accuracy of Docking Programs [My Copy] Journal of Chemical Information and Modeling, Vol. 0, No. 0. (0000) by Christopher R. Corbeil, Nicolas Moitessier posted to algorithm conformational displaceable docking enhanced fitted26 flexibility genetic molecules protein ring search water by zimbo1 on 2009-04-07 08:00:52 as
	Rotational Spectra and Conformational Analysis of Diethylsilane and Diethyldifluorosilane [My Copy] The Journal of Physical Chemistry A, Vol. 113, No. 13. (2 April 2009), pp. 3137-3142. by Sean A. Peebles, Michal M. Serafin, Rebecca A. Peebles, Gamil A. Guirgis, Howard D. Stidham posted to cconformational-analysis conformational by carlosjavierna on 2009-03-29 20:00:47 as
	Adding an explicit solvent molecule to polarized continuum model for computational study on the conformational population of a highly fluorinated hydrazone [My Copy] Journal of Molecular Structure: THEOCHEM (31 December 2008) by S. Lu posted to comformational-population conformational conformer molecular-modeling by carlosjavierna on 2009-03-29 18:00:47 as
	Preparation and conformational analysis of C-glycosyl β2- and β/β2-peptides [My Copy] Carbohydrate Research, Vol. 344, No. 5. (31 March 2009), pp. 613-626. by Yoko Inaba, Toru Kawakami, Saburo Aimoto, et al.Takahisa Ikegami, Takae Takeuchi, Takashi Nakazawa, Shigenobu Yano, Yuji Mikata posted to conformational conformational-states by carlosjavierna on 2009-03-22 03:58:27 as
	Fascination with the Conformational Analysis of Succinic Acid, as Evaluated by NMR Spectroscopy, and Why† [My Copy] Accounts of Chemical Research, Vol. 39, No. 12. (1 December 2006), pp. 889-896. by John D. Roberts posted to conformational conformational-change conformational-states conformer by carlosjavierna on 2009-03-15 18:10:46 as
	Computational techniques for efficient conformational sampling of proteins [My Copy] Current Opinion in Structural Biology, Vol. In Press, Corrected Proof by Adam Liwo, Cezary Czaplewski, Stanislaw Oldziej, Harold A. Scheraga posted to conformational protein_folding sampling by apaydin on 2009-03-15 09:32:13 as along with 3 people barry aqeel j3xucite
	A giant liposome for single-molecule observation of conformational changes in membrane proteins [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes (03 February 2009) by Yasuhiro Onoue, Toshiharu Suzuki, Max Davidson, et al.Mattias Karlsson, Owe Orwar, Masasuke Yoshida, Kinosita posted to bead change conformational protein wiggles by paulschlesinger on 2009-02-09 19:41:05 as
	Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy. [My Copy] J Mol Biol, Vol. 239, No. 2. (3 June 1994), pp. 249-275. by P. Koehl, M. Delarue posted to conformational design entropy packing protein by dfgreen on 2009-01-08 21:40:53 as along with 1 person bluvsh1
	Structure-based conformational preferences of amino acids [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 96, No. 22. (26 October 1999), pp. 12524-12529. by Patrice Koehl, Michael Levitt posted to conformational design packing preferences protein by dfgreen on 2009-01-08 21:37:57 as
	Carbohydrate conformation in aqueous solution: calculation of a QM/MM potential of mean force☆ [My Copy] Chemical Physics Letters, Vol. 388, No. 4-6. (21 April 2004), pp. 473-478. by A. Muslim, R. Bryce posted to ab-initio carbohydrate conformational preferences quantum-mechanics by dfgreen on 2009-01-08 20:52:38 as
	Is There a Generalized Reverse Anomeric Effect? Substituent and Solvent Effects on the Configurational Equilibria of Neutral and Protonated N-Arylglucopyranosylamines and N-Aryl-5-thioglucopyranosylamines† [My Copy] The Journal of Organic Chemistry, Vol. 65, No. 1. (1 January 2000), pp. 220-226. by Karla D. Randell, Blair D. Johnston, David F. Green, Mario B. Pinto posted to carbohydrate conformational preferences by dfgreen on 2009-01-07 23:21:22 as
	Conformational preferences in glycosylamines. implications for the exo-anomeric effect. [My Copy] Carbohydrate research, Vol. 330, No. 3. (15 February 2001), pp. 421-426. by R. J. Batchelor, D. F. Green, B. D. Johnston, B. O. Patrick, B. M. Pinto posted to carbohydrate conformational preferences by dfgreen on 2009-01-07 21:01:36 as
	Multiple conformational states of proteins: a molecular dynamics analysis of myoglobin [My Copy] Science, Vol. 235, No. 4786. (16 January 1987), pp. 318-321. by R. Elber, M. Karplus posted to conformational dynamics entropy molecular by dfgreen on 2009-01-07 20:55:35 as along with 1 person ruvido
	Structure of Human J-type Co-chaperone HscB Reveals a Tetracysteine Metal-binding Domain [My Copy] J. Biol. Chem., Vol. 283, No. 44. (31 October 2008), pp. 30184-30192. by Eduard Bitto, Craig A. Bingman, Lenka Bittova, et al.Dmitry A. Kondrashov, Ryan M. Bannen, Brian G. Fox, John L. Markley, George N. Phillips posted to changes conformational iron-sulfur by csjonline on 2008-12-20 08:29:21 as
	CONFORMATIONAL TRANSITION PATHWAYS EXPLORED BY MONTE CARLO SIMULATION INTEGRATED WITH COLLECTIVE MODES [My Copy] Biophys. J. (1 August 2008), biophysj.107.128447. by Nigar Kantarci-Carsibasi, Turkan Haliloglu, Pemra Doruker posted to carlo conformational kantar08pdf monte transition by paulschlesinger on 2008-12-19 01:16:31 as along with 5 people and 1 group sobolevnrm oteri viktor21614 sunhwan aqeel baker-group
	TonB induces conformational changes in surface-exposed loops of FhuA, outer membrane receptor of Escherichia coli [My Copy] Protein Sci, Vol. 17, No. 10. (1 October 2008), pp. 1679-1688. by Karron J. James, Mark A. Hancock, Violaine Moreau, Franck Molina, James W. Coulton posted to change conformational by carlosjavierna on 2008-10-14 18:16:17 as
	The kinetics of conformational fluctuations in an unfolded protein measured by fluorescence methods [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 7. (15 February 2005), pp. 2385-2389. by Krishnananda Chattopadhyay, Elliot L. Elson, Carl Frieden posted to chatto05pdf conformational fluctuations fluorescence methods by paulschlesinger on 2008-10-08 19:22:26 as along with 2 people victorclaessen rph
	Molecular dynamics simulations of ligand-induced backbone conformational changes in the binding site of the periplasmic lysine-, arginine-, ornithine-binding protein [My Copy] Journal of Computer-Aided Molecular Design by Ami Yang, Ricardo Mancera posted to backbone changes conformational ligand-induced md by zimbo1 on 2008-10-02 08:38:36 as along with 1 person LamBras
	Conformational Preferences and pKa Value of Cysteine Residue [My Copy] J. Phys. Chem. B (14 August 2008) by Joo Y. Lee, Byung J. Byun, Young K. Kang posted to conformational cysteine lee08pdf preference structure by paulschlesinger on 2008-08-15 01:26:46 as
	Small angle X-ray scattering study of calreticulin reveals conformational plasticity. [My Copy] Biochimica et biophysica acta (5 June 2008) by Katrine Nørgaard Toft, Nanna Larsen, Flemming Steen Jørgensen, Peter Højrup, Gunnar Houen, Bente Vestergaard posted to angle calreticulin conformational plasticity reveals scattering small study x-ray by BMBatSDU on 2008-08-01 09:43:06 as

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change	20
protein	15
changes	8
sampling	5
clustering	4
dynamics	4
entropy	4
motion	4
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secondary	1
similarity	1
spectroscopy	1
steric	1
temperature	1
trajectory	1
wiggles	1
x-ray	1

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