Tag copy-number [at least 200 articles] Export

Recent papers classified by the tag copy-number.

	rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea. [My Copy] Nucleic acids research, Vol. 37, No. Database issue. (January 2009) by Zarraz May-Ping M. Lee, Carl Bussema, Thomas M. Schmidt posted to rrna_gene rrna copy-number-variation copy-number 16s by idoerg on 2009-11-27 23:30:37 as
	Molecular Quantification of Symbiotic Dinoflagellate Algae of the Genus Symbiodinium [My Copy] Biol Bull, Vol. 212, No. 3. (1 June 2007), pp. 259-268. by Jeannette E. Loram, Neil Boonham, Peter O'Toole, Henry G. Trapido-Rosenthal, Angela E. Douglas posted to copy-number-variation copy-number 18s by idoerg on 2009-11-27 23:27:48 as
	Targets of genome copy number reduction in primary breast cancers identified by integrative genomics. [My Copy] Genes, chromosomes & cancer, Vol. 46, No. 3. (March 2007), pp. 288-301. by Wei Chen, Manuel Salto-Tellez, Nallasivam Palanisamy, et al.Kumaresan Ganesan, Qingsong Hou, Lay Keng K. Tan, Lang Hiong H. Sii, Kosei Ito, Benita Tan, Jeanie Wu, Andrew Tay, Kok Chai C. Tan, Erik Ang, Bien Keem K. Tan, Puay Hoon H. Tan, Yoshiaki Ito, Patrick Tan posted to integration gene_expression copy-number breast_cancer by jfr on 2009-11-27 11:04:34 as along with 1 person emb51
	Copy number analysis indicates monoclonal origin of lethal metastatic prostate cancer [My Copy] Nat Med, Vol. 15, No. 5. (May 2009), pp. 559-565. by Wennuan Liu, Sari Laitinen, Sofia Khan, et al.Mauno Vihinen, Jeanne Kowalski, Guoqiang Yu, Li Chen, Charles M. Ewing, Mario A. Eisenberger, Michael A. Carducci, William G. Nelson, Srinivasan Yegnasubramanian, Jun Luo, Yue Wang, Jianfeng Xu, William B. Isaacs, Tapio Visakorpi, G. Steven Bova posted to snp-arrays prostate_cancer metastasis copy-number by jfr on 2009-11-26 13:06:05 as along with 3 people jessopher wimufi jbhiatt
	High-resolution analysis of copy number alterations and associated expression changes in ovarian tumors. [My Copy] BMC medical genomics, Vol. 2 (2009) by Peter M. Haverty, Lawrence S. Hon, Joshua S. Kaminker, John Chant, Zemin Zhang posted to ovarian_cancer integration gene_expression copy-number by jfr on 2009-11-25 15:01:43 as along with 2 people daed rdiaz
	High-resolution mapping of copy-number alterations with massively parallel sequencing. [My Copy] Nature methods, Vol. 6, No. 1. (30 January 2009), pp. 99-103. by Derek Y. Chiang, Gad Getz, David B. Jaffe, et al.Michael J. O'Kelly, Xiaojun Zhao, Scott L. Carter, Carsten Russ, Chad Nusbaum, Matthew Meyerson, Eric S. Lander posted to deep_sequencing copy-number by jfr on 2009-11-25 14:59:37 as along with 6 people Annab stubrown stsaft jbhiatt absterga xwbcn
	Integrated genome-wide DNA copy number and expression analysis identifies distinct mechanisms of primary chemoresistance in ovarian carcinomas. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 4. (15 February 2009), pp. 1417-1427. by Dariush Etemadmoghadam, Anna deFazio, Rameen Beroukhim, et al.Craig Mermel, Joshy George, Gad Getz, Richard Tothill, Aikou Okamoto, Maria B. Raeder, Paul Harnett, Stephen Lade, Lars A. Akslen, Anna V. Tinker, Bianca Locandro, Kathryn Alsop, Yoke-Eng E. Chiew, Nadia Traficante, Sian Fereday, Daryl Johnson, Stephen Fox, William Sellers, Mitsuyoshi Urashima, Helga B. Salvesen, Matthew Meyerson, David Bowtell, AOCS Study Group posted to ovarian_cancer integration gene_expression copy-number chemotherapy by jfr on 2009-11-25 12:44:00 as along with 1 person rdiaz
	An integrated genomic analysis of lung cancer reveals loss of DUSP4 in EGFR-mutant tumors [My Copy] Oncogene, Vol. 28, No. 31. (15 June 2009), pp. 2773-2783. by D. Chitale, Y. Gong, B. S. Taylor, et al.S. Broderick, C. Brennan, R. Somwar, B. Golas, L. Wang, N. Motoi, J. Szoke, J. M. Reinersman, J. Major, C. Sander, V. E. Seshan, M. F. Zakowski, V. Rusch, W. Pao, W. Gerald, M. Ladanyi posted to mutation lung_cancer kras integration egfr copy-number by jfr on 2009-11-25 11:46:17 as along with 1 person frohike
	Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content [My Copy] PLoS Genet, Vol. 5, No. 11. (20 November 2009), e1000734. by Nathan M. Springer, Kai Ying, Yan Fu, et al.Tieming Ji, Cheng-Ting Yeh, Yi Jia, Wei Wu, Todd Richmond, Jacob Kitzman, Heidi Rosenbaum, A. Leonardo Iniguez, W. Brad Barbazuk, Jeffrey A. Jeddeloh, Daniel Nettleton, Patrick S. Schnable posted to maize genome evolution copy-number by cabbagesofdoom on 2009-11-25 11:34:06 as along with 1 person maren
	Major copy proportion analysis of tumor samples using SNP arrays. [My Copy] BMC bioinformatics, Vol. 9 (21 April 2008), 204. by Cheng Li, Rameen Beroukhim, Barbara A. Weir, et al.Wendy Winckler, Levi A. Garraway, William R. Sellers, Matthew Meyerson posted to software loh copy-number affy by jfr on 2009-11-23 16:36:32 as
	Exploratory analysis of the copy number alterations in glioblastoma multiforme. [My Copy] PloS one, Vol. 3, No. 12. (2008) by Pablo Freire, Marco Vilela, Helena Deus, et al.Yong-Wan W. Kim, Dimpy Koul, Howard Colman, Kenneth D. Aldape, Oliver Bogler, Alfred K. Yung, Kevin Coombes, Gordon B. Mills, Ana T. Vasconcelos, Jonas S. Almeida posted to tcga software glioblastoma copy-number by jfr on 2009-11-23 16:31:21 as along with 1 person srp33
	Model-based clustering of array CGH data [My Copy] Bioinformatics, Vol. 25, No. 12. (15 June 2009), pp. i30-38. by Sohrab P. Shah, K-John Cheung, Nathalie A. Johnson, et al.Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy posted to model-based copy-number clustering array-cgh by jfr on 2009-11-18 14:50:01 as along with 5 people jonilaserson dolchan rdiaz kdpreter nuin
	Joint estimation of copy number variation and reference intensities on multiple DNA arrays using GADA. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 10. (15 May 2009), pp. 1223-1230. by R. Pique-Regi, A. Ortega, S. Asgharzadeh posted to copy-number by jfr on 2009-11-09 14:37:41 as along with 5 people guhjy jsatkosk humburg pkonings rdiaz
	Aneuploidy prediction and tumor classification with heterogeneous hidden conditional random fields [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1307-1313. by Zafer Barutcuoglu, Edoardo M. Airoldi, Vanessa Dumeaux, Robert E. Schapire, Olga G. Troyanskaya posted to copy-number by jfr on 2009-11-09 14:36:20 as along with 3 people rdiaz pkonings Zephyrus
	Genome-wide massively parallel sequencing of formaldehyde fixed-paraffin embedded (FFPE) tumor tissues for copy-number- and mutation-analysis. [My Copy] PloS one, Vol. 4, No. 5. (2009) by Michal R. Schweiger, Martin Kerick, Bernd Timmermann, et al.Marcus W. Albrecht, Tatjana Borodina, Dmitri Parkhomchuk, Kurt Zatloukal, Hans Lehrach posted to technology mutation ffpe deep_sequencing copy-number by jfr on 2009-11-08 23:11:35 as along with 1 person reyez
	Association of survival and disease progression with chromosomal instability: A genomic exploration of colorectal cancer [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 17. (28 April 2009), pp. 7131-7136. by Michal Sheffer, Manny D. Bacolod, Or Zuk, et al.Sarah F. Giardina, Hanna Pincas, Francis Barany, Philip B. Paty, William L. Gerald, Daniel A. Notterman, Eytan Domany posted to survival copy-number colon_cancer by jfr on 2009-11-08 23:03:53 as along with 2 people kdpreter rdiaz
	Combining chromosomal arm status and significantly aberrant genomic locations reveals new cancer subtypes. [My Copy] Cancer informatics, Vol. 7 (2009), pp. 91-104. by Tal Shay, Wanyu L. Lambiv, Anat Reiner-Benaim, Monika E. Hegi, Eytan Domany posted to subtypes copy-number by jfr on 2009-11-08 23:01:41 as
	The breast cancer somatic 'muta-ome': tackling the complexity. [My Copy] Breast cancer research : BCR, Vol. 11, No. 2. (30 March 2009), 301. by Andrew E. Teschendorff, Carlos Caldas posted to sequencing mutations copy-number comment breast_cancer by jfr on 2009-11-08 22:45:12 as
	Genetic Alterations and Oncogenic Pathways Associated with Breast Cancer Subtypes [My Copy] Molecular Cancer Research, Vol. 7, No. 4. (April 2009), pp. 511-522. by Xiaolan Hu, Howard M. Stern, Lin Ge, et al.Carol O'Brien, Lauren Haydu, Cynthia D. Honchell, Peter M. Haverty, Brock A. Peters, Thomas D. Wu, Lukas C. Amler, John Chant, David Stokoe, Mark R. Lackner, Guy Cavet posted to subtypes copy-number breast_cancer by jfr on 2009-11-08 22:06:10 as along with 2 people rdiaz Zephyrus
	Integrated functional, gene expression and genomic analysis for the identification of cancer targets. [My Copy] PloS one, Vol. 4, No. 4. (9 April 2009), e5120. by Elizabeth Iorns, Christopher J. Lord, Anita Grigoriadis, et al.Sarah McDonald, Kerry Fenwick, Alan Mackay, Charles A. Mein, Rachael Natrajan, Kay Savage, Narinder Tamber, Jorge S. Reis-Filho, Nicholas C. Turner, Alan Ashworth posted to target rnai integration gene_expression drug_discovery copy-number biomarker by jfr on 2009-11-03 17:11:01 as along with 2 people rdiaz roys
	Ultrasome: efficient aberration caller for copy number studies of ultra-high resolution. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 8. (15 April 2009), pp. 1078-1079. by Björn Nilsson, Mikael Johansson, Fatima Al-Shahrour, Anne E. Carpenter, Benjamin L. Ebert posted to software segmentation copy-number by jfr on 2009-11-02 17:27:22 as along with 3 people daed rdiaz pkonings
	Distinct genomic aberrations associated with ERG rearranged prostate cancer. [My Copy] Genes, chromosomes & cancer, Vol. 48, No. 4. (April 2009), pp. 366-380. by Francesca Demichelis, Sunita R. Setlur, Rameen Beroukhim, et al.Sven Perner, Jan O. Korbel, Christopher J. Lafargue, Dorothee Pflueger, Cara Pina, Matthias D. Hofer, Andrea Sboner, Maria A. Svensson, David S. Rickman, Alex Urban, Michael Snyder, Matthew Meyerson, Charles Lee, Mark B. Gerstein, Rainer Kuefer, Mark A. Rubin posted to prostate_cancer erg copy-number by jfr on 2009-11-02 17:09:03 as
	Identification of copy number gain and overexpressed genes on chromosome arm 20q by an integrative genomic approach in cervical cancer: potential role in progression. [My Copy] Genes, chromosomes & cancer, Vol. 47, No. 9. (September 2008), pp. 755-765. by Luigi Scotto, Gopeshwar Narayan, Subhadra V. Nandula, et al.Hugo Arias-Pulido, Shivakumar Subramaniyam, Achim Schneider, Andreas M. Kaufmann, Jason D. Wright, Bhavana Pothuri, Mahesh Mansukhani, Vundavalli V. Murty posted to integration gene_expression copy-number cervical_cancer 20q by jfr on 2009-11-02 16:58:49 as along with 1 person YuvalTabach
	Copy number alterations that predict metastatic capability of human breast cancer. [My Copy] Cancer research, Vol. 69, No. 9. (1 May 2009), pp. 3795-3801. by Yi Zhang, John W. Martens, Jack X. Yu, et al.John Jiang, Anieta M. Sieuwerts, Marcel Smid, Jan G. Klijn, Yixin Wang, John A. Foekens posted to integration copy-number classification breast_cancer by jfr on 2009-11-02 16:57:47 as along with 4 people giovenko frohike kdpreter rdiaz
	Integrated genomic profiling of endometrial carcinoma associates aggressive tumors with indicators of PI3 kinase activation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 12. (24 March 2009), pp. 4834-4839. by H. B. Salvesen, S. L. Carter, M. Mannelqvist, et al.A. Dutt, G. Getz, I. M. Stefansson, M. B. Raeder, M. L. Sos, I. B. Engelsen, J. Trovik, E. Wik, H. Greulich, T. H. Bø, I. Jonassen, R. K. Thomas, T. Zander, L. A. Garraway, A. M. Oyan, W. R. Sellers, K. H. Kalland, M. Meyerson, L. A. Akslen, R. Beroukhim posted to pik3ca integration gene_expression copy-number by jfr on 2009-11-02 16:39:09 as
	Prediction of novel microRNA genes in cancer-associated genomic regions--a combined computational and experimental approach. [My Copy] Nucleic acids research, Vol. 37, No. 10. (1 June 2009), pp. 3276-3287. by Anastasis Oulas, Alexandra Boutla, Katerina Gkirtzou, Martin Reczko, Kriton Kalantidis, Panayiota Poirazi posted to mirna_discovery mirna copy-number by jfr on 2009-11-02 16:15:02 as along with 6 people and 2 groups ppgardne ashishanand nuin samgj daforerog tonamswish Journal picks microRNA
	A flexible rank-based framework for detecting copy number aberrations from array data [My Copy] Bioinformatics, Vol. 25, No. 6. (15 March 2009), pp. 722-728. by Thomas LaFramboise, Wendy Winckler, Roman K. Thomas posted to software segmentation r copy-number by jfr on 2009-11-02 14:54:14 as along with 5 people djkt rdiaz dswan guhjy pkonings
	Copy number abnormalities, MYC activity, and the genetic fingerprint of normal B cells mechanistically define the microRNA profile of diffuse large B-cell lymphoma. [My Copy] Blood, Vol. 113, No. 26. (25 June 2009), pp. 6681-6690. by Cheng Li, Sang-Woo W. Kim, Deepak Rai, et al.Aswani R. Bolla, Siddharth Adhvaryu, Marsha C. Kinney, Ryan S. Robetorye, Ricardo C. Aguiar posted to myc mirna lymphoma gene_expression copy-number by jfr to the group microRNA on 2009-09-30 10:02:33 as
	CNV-seq, a new method to detect copy number variation using high-throughput sequencing. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 80. by Chao Xie, Martti T. Tammi posted to resequencing copy-number cnv-seq cnv by n00c on 2009-09-29 16:33:06 as along with 18 people and 1 group hzoltan biovils stubrown cthachuk GustavoLacerda darian bmenten natstreet sameersoi svenrahmann xiechao semrich pkonings rdiaz dswan sleepingcell neils magusina Bioinformatics
	Sensitive and accurate detection of copy number variants using read depth of coverage [My Copy] Genome Research, Vol. 19, No. 9. (5 September 2009), pp. 1586-1592. by Seungtai Yoon, Zhenyu Xuan, Vladimir Makarov, Kenny Ye, Jonathan Sebat posted to resequencing depth-of-coverage copy-number cnv by n00c on 2009-09-02 21:12:00 as along with 7 people woodson8 scmelton torfinnnome dakelley rdiaz jbhiatt pkonings
	Personalized copy number and segmental duplication maps using next-generation sequencing. [My Copy] Nature genetics, Vol. 41, No. 10. (30 October 2009), pp. 1061-1067. by Can Alkan, Jeffrey M. Kidd, Tomas Marques-Bonet, et al.Gozde Aksay, Francesca Antonacci, Fereydoun Hormozdiari, Jacob O. Kitzman, Carl Baker, Maika Malig, Onur Mutlu, S. Cenk Sahinalp, Richard A. Gibbs, Evan E. Eichler posted to resequencing mrfast map illumina copy-number cnv 454 by n00c on 2009-09-02 16:25:14 as along with 30 people and 1 group ongenetics chvlyl leemachado daed gbenson bozdagd dakelley sbmontgomery eshirdel merpublic shyamsg scmelton qayub natstreet fenghezi Annab djkt nuin xingxu jamesmorris rdiaz brant torfinnnome jandot pkonings danmaclean daforerog frohike rschulz gangcai Journal picks
	Reliability of Tissue Microarrays in Detecting Protein Expression and Gene Amplification in Breast Cancer [My Copy] Mod Pathol, Vol. 16, No. 1. (0000), pp. 79-85. by Daohai Zhang, Manuel Salto-Tellez, Thomas C. Putti, Elaine Do, Evelyn S. Koay posted to microarray gene-expression copy-number cancer analytical by stharward on 2009-08-27 21:29:04 as
	Survey of Gene Amplifications during Prostate Cancer Progression by High-Throughput Fluorescence in Situ Hybridization on Tissue Microarrays [My Copy] Cancer Res, Vol. 59, No. 4. (1 February 1999), pp. 803-806. by Lukas Bubendorf, Juha Kononen, Pasi Koivisto, et al.Peter Schraml, Holger Moch, Thomas C. Gasser, Niels Willi, Michael J. Mihatsch, Guido Sauter, Olli-P Kallioniemi posted to microarray high-throughput-screening copy-number cancer by stharward on 2009-08-27 21:24:37 as
	High-Throughput Copy Number Analysis of 17q23 in 3520 Tissue Specimens by Fluorescence in Situ Hybridization to Tissue Microarrays [My Copy] Am J Pathol, Vol. 161, No. 1. (1 July 2002), pp. 73-79. by Claus L. Andersen, Outi Monni, Urs Wagner, et al.Juha Kononen, Maarit Barlund, Christoph Bucher, Philippe Haas, Antonio Nocito, Heidi Bissig, Guido Sauter, Anne Kallioniemi posted to microarray in-situ-hybridization high-throughput-screening copy-number cancer by stharward on 2009-08-27 20:36:34 as
	Discovering Combinations of Genomic Aberrations Associated With Cancer [My Copy] Journal of the American Statistical Association, Vol. 97, No. 460. (December 2002), pp. 931-942. by Michael A. Newton posted to copy-number computational cgh cancer by stharward on 2009-07-23 17:33:51 as along with 1 person srp33
	Representational Oligonucleotide Microarray Analysis: A High-Resolution Method to Detect Genome Copy Number Variation [My Copy] Genome Research, Vol. 13, No. 10. (October 2003), pp. 2291-2305. by Robert Lucito, John Healy, Joan Alexander, et al.Andrew Reiner, Diane Esposito, Maoyen Chi, Linda Rodgers, Amy Brady, Jonathan Sebat, Jennifer Troge, Joseph A. West, Seth Rostan, Ken C. Q. Nguyen, Scott Powers, Kenneth Q. Ye, Adam Olshen, Ennapadam Venkatraman, Larry Norton, Michael Wigler posted to copy-number cgh cancer by stharward on 2009-07-23 17:31:18 as along with 5 people Annab oilcan rdiaz bioguru2000 joule
	The miR-106b-25 polycistron, activated by genomic amplification, functions as an oncogene by suppressing p21 and Bim. [My Copy] Gastroenterology, Vol. 136, No. 5. (May 2009), pp. 1689-1700. by T. Kan, F. Sato, T. Ito, et al.N. Matsumura, S. David, Y. Cheng, R. Agarwal, B. C. Paun, Z. Jin, A. V. Olaru, F. M. Selaru, J. P. Hamilton, J. Yang, J. M. Abraham, Y. Mori, S. J. Meltzer posted to bim copy-number mcm7 mir-106b-25 mirna p21 by jfr to the group microRNA on 2009-07-22 14:31:23 as
	Recurrent gross mutations of the PTEN tumor suppressor gene in breast cancers with deficient DSB repair. [My Copy] Nature genetics, Vol. 40, No. 1. (09 January 2008), pp. 102-107. by L. H. Saal, S. K. Gruvberger-Saal, C. Persson, et al.K. Lövgren, M. Jumppanen, J. Staaf, G. Jönsson, M. M. Pires, M. Maurer, K. Holm, S. Koujak, S. Subramaniyam, J. Vallon-Christersson, H. Olsson, T. Su, L. Memeo, T. Ludwig, S. P. Ethier, M. Krogh, M. Szabolcs, V. V. Murty, J. Isola, H. Hibshoosh, R. Parsons, A. Borg posted to breast_cancer copy-number mutation pten by jfr on 2009-07-22 13:41:41 as
	RJaCGH: Bayesian analysis of aCGH arrays for detecting copy number changes and recurrent regions [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1959-1960. by Oscar M. Rueda, Ramon Diaz-Uriarte posted to acgh analysis cgh copy copy-number number rjacgh by Stew to the group Bioinformatics - CRUK on 2009-07-22 09:36:17 as along with 2 people rdiaz nuin
	Estimation of tumor heterogeneity using CGH array data. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009) by K. Wang, J. Li, S. Li, L. Bolund, C. Wiuf posted to breast_cancer copy-number metastasis by jfr on 2009-07-17 15:40:22 as along with 4 people and 1 group mdharsee rdiaz pkonings dswan Bioinformatics
	Tiling path genomic profiling of grade 3 invasive ductal breast cancers. [My Copy] Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 15, No. 8. (15 April 2009), pp. 2711-2722. by R. Natrajan, M. B. Lambros, S. M. Rodríguez-Pinilla, et al.G. Moreno-Bueno, D. S. Tan, C. Marchió, R. Vatcheva, S. Rayter, B. Mahler-Araujo, L. G. Fulford, D. Hungermann, A. Mackay, A. Grigoriadis, K. Fenwick, N. Tamber, D. Hardisson, A. Tutt, J. Palacios, C. J. Lord, H. Buerger, A. Ashworth, J. S. Reis-Filho posted to breast_cancer copy-number subtypes by jfr on 2009-07-17 10:19:30 as along with 1 person Zephyrus
	Estimating Genome-Wide Copy Number Using Allele-Specific Mixture Models [My Copy] Journal of Computational Biology, Vol. 15, No. 7. (September 2008), pp. 857-866. by Wenyi Wang, Benilton Carvalho, Nathaniel D. Miller, Jonathan Pevsner, Aravinda Chakravarti, Rafael A. Irizarry posted to mixture-models microarray data-preprocessing copy-number cgh by stharward on 2009-07-15 21:16:18 as
	Normalization of array-CGH data: influence of copy number imbalances [My Copy] BMC Genomics, Vol. 8, No. 1. (22 October 2007), 382. by Johan Staaf, Goran Jonsson, Markus Ringner, Johan V. Christersson posted to normalization data-preprocessing copy-number cgh by stharward on 2009-07-15 19:39:18 as along with 3 people rdiaz magusina jfr
	Large-Scale Copy Number Polymorphism in the Human Genome [My Copy] Science, Vol. 305, No. 5683. (23 July 2004), pp. 525-528. by Jonathan Sebat, B. Lakshmi, Jennifer Troge, et al.Joan Alexander, Janet Young, Par Lundin, Susanne Maner, Hillary Massa, Megan Walker, Maoyen Chi, Nicholas Navin, Robert Lucito, John Healy, James Hicks, Kenny Ye, Andrew Reiner, T. Conrad Gilliam, Barbara Trask, Nick Patterson, Anders Zetterberg, Michael Wigler posted to genome copy-number by stharward on 2009-07-14 20:40:40 as along with 11 people and 2 groups psique krokicki waszak mercaptan pcahan1 mrkrause rdiaz jeremymiller massivemayhem jpdemuth Ema Bioinformatics GeschwindLab
	Segmental duplications and copy-number variation in the human genome. [My Copy] American journal of human genetics, Vol. 77, No. 1. (July 2005), pp. 78-88. by A. J. Sharp, D. P. Locke, S. D. McGrath, et al.Z. Cheng, J. A. Bailey, R. U. Vallente, L. M. Pertz, R. A. Clark, S. Schwartz, R. Segraves, V. V. Oseroff, D. G. Albertson, D. Pinkel, E. E. Eichler posted to database copy-number cgh by stharward on 2009-07-14 15:47:00 as along with 6 people and 4 groups dakelley daed pcahan1 balicea dchughes giovanni Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
	High-resolution characterization of the pancreatic adenocarcinoma genome [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 101, No. 24. (15 June 2004), pp. 9067-9072. by Andrew J. Aguirre, Cameron Brennan, Gerald Bailey, et al.Raktim Sinha, Bin Feng, Christopher Leo, Yunyu Zhang, Jean Zhang, Joseph D. Gans, Nabeel Bardeesy, Craig Cauwels, Carlos Cordon-Cardo, Mark S. Redston, Ronald A. Depinho, Lynda Chin posted to quantitative-pcr copy-number cgh cancer by stharward on 2009-07-14 15:30:16 as along with 4 people jfr rdiaz OscarRueda frohike
	Computation of recurrent minimal genomic alterations from array-CGH data [My Copy] Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 849-856. by C. Rouveirol, N. Stransky, Ph Hupe, et al.Ph Rosa, E. Viara, E. Barillot, F. Radvanyi posted to copy-number computational cgh cancer by stharward on 2009-07-14 15:25:12 as along with 1 person dolchan
	Modeling recurrent DNA copy number alterations in array CGH data [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i450-458. by Sohrab P. Shah, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy posted to hmm copy-number cgh by stharward on 2009-07-14 15:21:59 as along with 2 people and 1 group frohike pcarbo Bioinformatics
	Distinct patterns of DNA copy number alteration are associated with different clinicopathological features and gene-expression subtypes of breast cancer [My Copy] Genes, Chromosomes and Cancer, Vol. 45, No. 11. (November 2006), pp. 1033-1040. by Anna Bergamaschi, Young H. Kim, Pei Wang, et al.Therese Sørlie, Tina Hernandez-Boussard, Per E. Lonning, Robert Tibshirani, Anne-Lise Børresen-Dale, Jonathan R. Pollack posted to copy-number cgh cancer by stharward on 2009-07-13 16:36:36 as along with 5 people frohike srp33 jfr rdiaz emb51
	A single-sample method for normalizing and combining full-resolution copy numbers from multiple platforms, labs and analysis methods. [My Copy] Bioinformatics (Oxford, England), Vol. 25, No. 7. (1 April 2009), pp. 861-867. by H. Bengtsson, A. Ray, P. Spellman, T. P. Speed posted to aroma copy-number normalization r by jfr to the group Bioinformatics on 2009-07-09 13:08:40 as along with 5 people zufar djkt guhjy rdiaz pkonings

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gene_expression	38
breast_cancer	33
colon_cancer	33
integration	33
software	22
snp-arrays	18
array-cgh	17
evolution	17
methodology	15
cgh	12
evolutionary-genomics	12
cnv	10
review	10
genome-variation	9
mirna	9
cancer	8
microarray_technology	6
mutations	6
subtypes	6
crc_bib	5
genomics	5
methylation	5
microarray	5
mutation	5
progression	5
whole-genomic	5
drosophila	4
genome	4
metastasis	4
msi	4
normalization	4
r	4
segmentation	4
analysis	3
cell_line	3
comparison	3
database	3
ffpe	3
genotyping	3
human	3
illumina	3
lung_cancer	3
lymphoma	3
meta-analysis	3
ovarian_cancer	3
resequencing	3
sequencing	3
454	2
acgh	2
aroma	2
bim	2
brca	2
classification	2
clustering	2
comment	2
computational	2
copy	2
copy-number-variation	2
data-preprocessing	2
deep_sequencing	2
estrogen	2
gene-expression	2
gene-family	2
genome-structure	2
genome-transposon	2
glioblastoma	2
hapmap	2
high-throughput-screening	2
informatics	2
inversion-paper	2
loh	2
mcm7	2
mir-106b-25	2
myc	2
natural	2
number	2
p21	2
plasmodium	2
platform_comparison	2
polymorphism	2
pop-gen	2
prostate_cancer	2
rjacgh	2
rt-pcr	2
selection	2
snp	2
statistics	2
survival	2
18q_loh	1
algorithm	1
duplication	1
erg	1
estimation	1
families	1
map	1
perception	1
public_data	1
quantitative-pcr	1
r-project	1
stroma	1

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