Tag copy_number [44 articles] Export

Recent papers classified by the tag copy_number.

	Visualization of ribosomal RNA operon copy number distribution [My Copy] BMC Microbiology, Vol. 9, No. 1. (25 September 2009), 208. by Rajat Rastogi, Martin Wu, Indrani DasGupta, George Fox posted to operon copy_number 16s by skembel on 2009-11-19 19:06:22 as
	Copy number alterations that predict metastatic capability of human breast cancer. [My Copy] Cancer research, Vol. 69, No. 9. (1 May 2009), pp. 3795-3801. by Yi Zhang, John W. Martens, Jack X. Yu, et al.John Jiang, Anieta M. Sieuwerts, Marcel Smid, Jan G. Klijn, Yixin Wang, John A. Foekens posted to copy_number breast_cancer by giovenko on 2009-10-10 11:38:00 as along with 4 people jfr frohike kdpreter rdiaz
	Worldwide distribution of transposable element copy number in natural populations of Drosophila simulans. [My Copy] Evolution; international journal of organic evolution, Vol. 57, No. 1. (January 2003), pp. 159-167. by Christian Biémont, Christiane Nardon, Grégory Deceliere, David Lepetit, Catherine Loevenbruck, Cristina Vieira posted to copy_number drosophila simulans transposable_elements worldwide_distribution by gwallau on 2009-07-31 14:41:21 as
	Wake up of transposable elements following Drosophila simulans worldwide colonization [My Copy] Mol Biol Evol, Vol. 16, No. 9. (1 September 1999), pp. 1251-1255. by C. Vieira, D. Lepetit, S. Dumont, C. Biémont posted to copy_number drosophila simulans transposable_elements by gwallau on 2009-07-31 14:38:17 as
	Maintenance of transposable element copy number in natural populations of Drosophila melanogaster and D. simulans [My Copy] Genetica, Vol. 100, No. 1. (1 March 1997), pp. 161-166. by Christian Biémont, Cristina Vieira, Christine Hoogland, et al.Géraldine Cizeron, Catherine Lœvenbruck, Claude Arnault, Jean-Pierre Carante posted to copy_number drosophila melanogaster natural_populations simulans transposable_elements by gwallau on 2009-07-31 14:06:24 as
	A rapid decrease in number of the complete ninja element and concomitant increase of the defective element in a strain of Drosophila simulans [My Copy] Genetica, Vol. 124, No. 1. (31 May 2005), pp. 99-106. by Keiji Ogura, Takashi Ohsako, Masa-Toshi Yamamoto posted to drosophila ninja number simulans copy_number transposable_elements by gwallau on 2009-07-31 14:03:00 as
	Does replication-induced transcription regulate synthesis of the myriad low copy number proteins of <I>Escherichia coli</I>? [My Copy] BioEssays, Vol. 17, No. 11. (1995), pp. 987-997. by Purnananda Guptasarma posted to bacteria copy_number e_coli stochastic transcription by jjray on 2009-04-27 23:17:26 as
	Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey [My Copy] BMC Genomics, Vol. 8 (24 May 2007), 132. by Kankshita Swaminathan, Kranthi Varala, Matthew E. Hudson posted to copy_number ngs by floatingpoint on 2009-02-16 15:32:50 as along with 5 people and 2 groups orzenil ghattem GustavoLacerda tpreeprem bozdagd BergmanLab gatech-compgenomics
	A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster. [My Copy] Genetical research, Vol. 89, No. 5-6. (December 2007), pp. 435-445. by E. Montgomery, B. Charlesworth, C. H. Langley posted to drosophila melanogaster natural population selection transposable_elements copy_number by gwallau on 2008-12-23 18:54:29 as along with 1 person operon
	What prevents transposable elements from taking over the genome? A commentary on 'A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster' by Elizabeth Montgomery, Brian Charlesworth and Charles H. Langley. [My Copy] Genetical research, Vol. 89, No. 5-6. (December 2007), pp. 433-434. by T. F. Mackay posted to drosophila melanogaster natural population selection transposable_elements copy_number by gwallau on 2008-12-23 18:51:09 as along with 2 people operon imtechnology
	Small-scale copy number variation and large-scale changes in gene expression [My Copy] Proceedings of the National Academy of Sciences (22 October 2008) by Yuriy Mileyko, Richard I. Joh, Joshua S. Weitz posted to copy_number duplication expression motif network regulation by ealloza on 2008-10-29 10:45:29 as along with 7 people jporternj austin zufar azazello mtagaya bpcusack jjray
	Functional copy number changes in Sézary syndrome: toward an integrated molecular cytogenetic map III [My Copy] Cancer Genetics and Cytogenetics, Vol. 185, No. 2. (September 2008), pp. 86-94. by Xin Mao, Suzanne Mcelwaine posted to aberration cancer copy_number functional_annotation human syndrome by ealloza on 2008-09-09 15:14:32 as
	A fast and flexible method for the segmentation of aCGH data. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by E. Ben-Yaacov, Y. C. Eldar posted to acgh copy_number segmentation by aviad_work on 2008-08-19 22:17:20 as along with 6 people noushin daed jfr rdiaz nuin talponer
	Global variation in copy number in the human genome [My Copy] Nature, Vol. 444, No. 7118. (23 November 2006), pp. 444-454. by Richard Redon, Shumpei Ishikawa, Karen R. Fitch, et al.Lars Feuk, George H. Perry, T. Daniel Andrews, Heike Fiegler, Michael H. Shapero, Andrew R. Carson, Wenwei Chen, Eun K. Cho, Stephanie Dallaire, Jennifer L. Freeman, Juan R. Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R. MacDonald, Christian R. Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J. Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F. Conrad, Xavier Estivill, Chris Tyler-Smith, Nigel P. Carter, Hiroyuki Aburatani, Charles Lee, Keith W. Jones, Stephen W. Scherer, Matthew E. Hurles posted to comparative copy_number genomics human snp by pradiptaray on 2008-07-01 02:00:03 as along with 41 people and 7 groups sameersoi lp2 ilyashl ajbattle darian jonilaserson jrvalcourt turnersd guhjy daforerog noushin Glires ivanek waszak jo_davies psique bpb jfr balajis dpollard mtagaya adepace aswin rdiaz qfwills ealloza vplagnol giovanni jeremymiller frohike vpschulz raiyar ramensky ccr azazello dbgrant colinveal xingxu srp33 Ema daed parkinson's disease references Bioinformatics EisenLab BioinfoCIPF GeschwindLab steinmetzlab MBLAB
	A genotype calling algorithm for the Illumina BeadArray platform [My Copy] Bioinformatics, Vol. 23, No. 20. (15 October 2007), pp. 2741-2746. by Yik Y. Teo, Michael Inouye, Kerrin S. Small, et al.Rhian Gwilliam, Panagiotis Deloukas, Dominic P. Kwiatkowski, Taane G. Clark posted to copy_number by debasis on 2008-05-05 13:04:27 as along with 3 people floatingpoint niallhaslam flexer
	Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays. [My Copy] Genome research, Vol. 16, No. 12. (1 December 2006), pp. 1575-1584. by Daisuke Komura, Fan Shen, Shumpei Ishikawa, et al.Karen R. Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E. Hurles, Charles Lee, Stephen W. Scherer, Keith W. Jones, Michael H. Shapero, Jing Huang, Hiroyuki Aburatani posted to copy_number by debasis on 2008-05-02 12:45:28 as along with 10 people and 4 groups shikin rdiaz waszak jfr dchughes giovanni jeremymiller frohike vpschulz shigepong Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
	A robust algorithm for copy number detection using high-density oligonucleotide single nucleotide polymorphism genotyping arrays. [My Copy] Cancer Res, Vol. 65, No. 14. (15 July 2005), pp. 6071-6079. by Y. Nannya, M. Sanada, K. Nakazaki, et al.N. Hosoya, L. Wang, A. Hangaishi, M. Kurokawa, S. Chiba, D. K. Bailey, G. C. Kennedy, S. Ogawa posted to copy_number by debasis on 2008-05-02 12:39:54 as along with 5 people noushin jfr rdiaz bioguru2000 cpnP
	Spatial smoothing and hot spot detection for CGH data using the fused lasso. [My Copy] Biostatistics (Oxford, England), Vol. 9, No. 1. (January 2008), pp. 18-29. by Robert Tibshirani, Pei Wang posted to copy_number by debasis on 2008-05-02 10:45:47 as along with 2 people shikin rdiaz
	Accurate and reliable high-throughput detection of copy number variation in the human genome [My Copy] Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1566-1574. by Heike Fiegler, Richard Redon, Dan Andrews, et al.Carol Scott, Robert Andrews, Carol Carder, Richard Clark, Oliver Dovey, Peter Ellis, Lars Feuk, Lisa French, Paul Hunt, Dimitrios Kalaitzopoulos, James Larkin, Lyndal Montgomery, George H. Perry, Bob W. Plumb, Keith Porter, Rachel E. Rigby, Diane Rigler, Armand Valsesia, Cordelia Langford, Sean J. Humphray, Stephen W. Scherer, Charles Lee, Matthew E. Hurles, Nigel P. Carter posted to copy_number by debasis on 2008-05-02 07:43:54 as along with 7 people and 4 groups jfr balicea dchughes mgaldzic shigepong ccr colinveal Bioinformatics G4ID CHIP Genetics-of-Gambling
	Rare structural variants disrupt multiple genes in neurodevelopmental pathways in schizophrenia. [My Copy] Science (New York, N.Y.), Vol. 320, No. 5875. (25 April 2008), pp. 539-543. by Tom Walsh, Jon M. McClellan, Shane E. McCarthy, et al.Anjené M. Addington, Sarah B. Pierce, Greg M. Cooper, Alex S. Nord, Mary Kusenda, Dheeraj Malhotra, Abhishek Bhandari, Sunday M. Stray, Caitlin F. Rippey, Patricia Roccanova, Vlad Makarov, B. Lakshmi, Robert L. Findling, Linmarie Sikich, Thomas Stromberg, Barry Merriman, Nitin Gogtay, Philip Butler, Kristen Eckstrand, Laila Noory, Peter Gochman, Robert Long, Zugen Chen, Sean Davis, Carl Baker, Evan E. Eichler, Paul S. Meltzer, Stanley F. Nelson, Andrew B. Singleton, Ming K. Lee, Judith L. Rapoport, Mary-Claire C. King, Jonathan Sebat posted to copy_number schizophrenia by giovanni on 2008-04-25 14:44:13 as along with 13 people and 1 group daforerog jbhiatt yun_li mbolding balabu waszak sekulerlab GustavoLacerda MWagner applebyb djkt lisa1 renatomilani VisionLab
	Increasing power in association studies by using linkage disequilibrium structure and molecular function as prior information. [My Copy] Genome research, Vol. 18, No. 4. (1 April 2008), pp. 653-660. by Eleazar Eskin posted to copy_number by debasis on 2008-04-21 05:53:09 as along with 6 people shikin daforerog ekostem jessopher gracio guhjy
	Integrative analysis reveals the direct and indirect interactions between DNA copy number aberrations and gene expression changes [My Copy] Bioinformatics, Vol. 24, No. 7. (1 April 2008), pp. 889-896. by Hyunju Lee, Sek W. Kong, Peter J. Park posted to aberration cancer copy_number expression microarray pathway by ealloza on 2008-03-26 12:56:52 as along with 9 people yina rdiaz Zephyrus jfr jcaddy barriot ptrobajo frohike srp33
	Efficiency and power in genetic association studies [My Copy] Nat Genet, Vol. 37, No. 11. (23 November 2005), pp. 1217-1223. by Paul I. W. de Bakker, Roman Yelensky, Itsik Pe'er, Stacey B. Gabriel, Mark J. Daly, David Altshuler posted to copy_number by debasis on 2008-02-29 05:30:39 as along with 13 people and 2 groups arsyed maren ekostem Zephyrus misonneh pcahan1 tiago ashandanj giovanni parkcc mailund guhjy Ayest Bioinformatics GeschwindLab
	Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome [My Copy] Science, Vol. 318, No. 5849. (19 October 2007), pp. 420-426. by Jan O. Korbel, Alexander E. Urban, Jason P. Affourtit, et al.Brian Godwin, Fabian Grubert, Jan F. Simons, Philip M. Kim, Dean Palejev, Nicholas J. Carriero, Lei Du, Bruce E. Taillon, Zhoutao Chen, Andrea Tanzer, A. C. Eugenia Saunders, Jianxiang Chi, Fengtang Yang, Nigel P. Carter, Matthew E. Hurles, Sherman M. Weissman, Timothy T. Harkins, Mark B. Gerstein, Michael Egholm, Michael Snyder posted to copy_number by giovanni on 2008-02-13 23:14:09 as along with 22 people and 2 groups torfinnnome jandot n00c jonilaserson jrvalcourt APRegier jessopher hpaces Zephyrus pkonings orzenil stuetz matthewsuderman dpollard dchughes AaronDarling rdiaz jlangdon annacarina07 Neeperando jfr caseybrown Journal picks EisenLab
	Copy-number variation in control population cohorts. [My Copy] Hum Mol Genet, Vol. 16 Spec No. 2 (15 October 2007) by D. Pinto, C. Marshall, L. Feuk, S. W. Scherer posted to copy_number by giovanni on 2007-11-28 15:21:40 as along with 1 person psique
	Widespread Monoallelic Expression on Human Autosomes [My Copy] Science, Vol. 318, No. 5853. (16 November 2007), pp. 1136-1140. by Alexander Gimelbrant, John N. Hutchinson, Benjamin R. Thompson, Andrew Chess posted to copy_number by giovanni on 2007-11-16 14:25:25 as along with 10 people clearbluespring Zephyrus djkt vplagnol qwermish oelemento caseybrown stoffreg vmsr bpcusack
	Array CGH analysis of copy number variation identifies 1284 new genes variant in healthy white males: implications for association studies of complex diseases. [My Copy] Human molecular genetics, Vol. 16, No. 23. (1 December 2007), pp. 2783-2794. by Adam J. de Smith, Anya Tsalenko, Nick Sampas, et al.Alicia Scheffer, N. Alice Yamada, Peter Tsang, Amir Ben-Dor, Zohar Yakhini, Richard J. Ellis, Laurakay Bruhn, Stephen Laderman, Philippe Froguel, Alexandra I. Blakemore posted to copy_number by giovanni on 2007-11-07 05:35:12 as along with 1 person and 1 group vplagnol Bioinformatics
	Copy Number Variants and Common Disorders: Filling the Gaps and Exploring Complexity in Genome-Wide Association Studies [My Copy] PLoS Genetics, Vol. 3, No. 10. (1 October 2007), e190. by Xavier Estivill, Lluís Armengol posted to copy_number by giovanni on 2007-10-20 02:11:18 as along with 2 people waszak jfr
	Large-Scale Copy Number Polymorphism in the Human Genome [My Copy] Science, Vol. 305, No. 5683. (23 July 2004), pp. 525-528. by Jonathan Sebat, B. Lakshmi, Jennifer Troge, et al.Joan Alexander, Janet Young, Par Lundin, Susanne Maner, Hillary Massa, Megan Walker, Maoyen Chi, Nicholas Navin, Robert Lucito, John Healy, James Hicks, Kenny Ye, Andrew Reiner, T. Conrad Gilliam, Barbara Trask, Nick Patterson, Anders Zetterberg, Michael Wigler posted to copy_number genetics quals by mrkrause on 2007-09-09 20:35:46 as along with 11 people and 2 groups stharward psique krokicki waszak mercaptan pcahan1 rdiaz jeremymiller massivemayhem jpdemuth Ema Bioinformatics GeschwindLab
	Mutational and selective effects on copy-number variants in the human genome. [My Copy] Nat Genet, Vol. 39, No. 7 Suppl. (July 2007) by G. M. Cooper, D. A. Nickerson, E. E. Eichler posted to copy_number genetics quals by mrkrause on 2007-09-09 20:32:19 as along with 3 people and 1 group waszak daed rdiaz Bioinformatics
	Copy-number variation and association studies of human disease. [My Copy] Nature genetics, Vol. 39, No. 7 Suppl. (July 2007) by Steven A. McCarroll, David M. Altshuler posted to copy_number genetics quals by mrkrause on 2007-09-09 20:31:47 as along with 9 people and 1 group psique daforerog waszak jo_davies vplagnol guhjy balicea rdiaz jasonflannick Bioinformatics
	The population genetics of structural variation. [My Copy] Nature genetics, Vol. 39, No. 7 Suppl. (July 2007) by Donald F. Conrad, Matthew E. Hurles posted to copy_number genetics quals by mrkrause on 2007-09-09 20:31:15 as along with 5 people sameersoi APRegier guhjy rdiaz jlangdon
	Methods and strategies for analyzing copy number variation using DNA microarrays. [My Copy] Nature genetics, Vol. 39, No. 7 Suppl. (July 2007) by Nigel P. Carter posted to copy_number genetics quals by mrkrause on 2007-09-09 20:30:21 as along with 5 people and 1 group vplagnol jo_davies guhjy jfr rdiaz Bioinformatics
	Functional profiling and gene expression analysis of chromosomal copy number alterations. [My Copy] Bioinformation, Vol. 1, No. 10. (2007), pp. 432-435. by L. Conde, D. Montaner, J. Burguet-Castell, J. Tárraga, F. Al-Shahrour, J. Dopazo posted to cgh chromosome copy_number expression microarray by ealloza on 2007-08-09 12:37:48 as along with 1 person and 1 group jfr BioinfoCIPF
	Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data [My Copy] Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3763-3770. by Weil R. Lai, Mark D. Johnson, Raju Kucherlapati, Peter J. Park posted to copy_number by debasis on 2007-07-17 21:10:01 as along with 3 people saerni shigepong srp33
	Using expression arrays for copy number detection: an example from E. coli [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (14 June 2007), 203. by Dmitriy Skvortsov, Diana Abdueva, Michael Stitzer, Steven Finkel, Simon Tavare posted to hmm expression copy_number cgh aberration by ealloza to the group BioinfoCIPF on 2007-06-25 12:50:00 as along with 3 people and 1 group natstreet bioguru2000 shigepong Bioinformatics
	A breakpoint map of recurrent chromosomal rearrangements in human neoplasia. [My Copy] Nat Genet, Vol. 15 Spec No (April 1997), pp. 417-474. by F. Mitelman, F. Mertens, B. Johansson posted to aberration cancer chromosome copy_number database deletion human by ealloza on 2007-06-06 16:04:55 as along with 1 person and 1 group waghsk BioinfoCIPF
	A High-Resolution Map of Segmental DNA Copy Number Variation in the Mouse Genome [My Copy] PLoS Genetics, Vol. 3, No. 1. (1 January 2007), e3. by Timothy A. Graubert, Patrick Cahan, Deepa Edwin, et al.Rebecca R. Selzer, Todd A. Richmond, Peggy S. Eis, William D. Shannon, Xia Li, Howard L. Mcleod, James M. Cheverud, Timothy J. Ley posted to mouse copy_number cgh by ealloza on 2007-01-31 11:50:27 as along with 1 person and 1 group tvdbulck BioinfoCIPF
	Detection of small genomic imbalances using microarray-based multiplex amplifiable probe hybridization [My Copy] European Journal of Human Genetics, Vol. aop, No. current. by Philippos C. Patsalis, Ludmila Kousoulidou, Katrin Männik, et al.Carolina Sismani, Olga Žilina, Sven Parkel, Helen Puusepp, Neeme Tõnisson, Priit Palta, Maido Remm, Ants Kurg, posted to microarray copy_number aberration by ealloza to the group BioinfoCIPF on 2007-01-19 10:32:30 as
	Are microRNAs located in genomic regions associated with cancer? [My Copy] British Journal of Cancer, Vol. aop, No. current. (26 September 2006) by P. Lamy, C. L. Andersen, L. Dyrskjot, N. Torring, T. Orntoft, C. Wiuf posted to cancer copy_number expression human microrna by ealloza to the group BioinfoCIPF on 2006-11-16 09:55:14 as along with 3 people and 1 group jfr andersbj Garamonfok microRNA
	Segmental duplications and copy-number variation in the human genome. [My Copy] American journal of human genetics, Vol. 77, No. 1. (July 2005), pp. 78-88. by A. J. Sharp, D. P. Locke, S. D. McGrath, et al.Z. Cheng, J. A. Bailey, R. U. Vallente, L. M. Pertz, R. A. Clark, S. Schwartz, R. Segraves, V. V. Oseroff, D. G. Albertson, D. Pinkel, E. E. Eichler posted to copy_number by giovanni to the group GeschwindLab on 2006-10-25 23:57:55 as along with 6 people and 3 groups stharward dakelley daed pcahan1 balicea dchughes Bioinformatics G4ID Genetics-of-Gambling
	microRNAs exhibit high frequency genomic alterations in human cancer. [My Copy] Proc Natl Acad Sci U S A (5 June 2006) by Lin Zhang, Jia Huang, Nuo Yang, et al.Joel Greshock, Molly S S. Megraw, Antonis Giannakakis, Shun Liang, Tara L L. Naylor, Andrea Barchetti, Michelle R R. Ward, George Yao, Angelica Medina, Ann O'brien-Jenkins, Dionyssios Katsaros, Artemis Hatzigeorgiou, Phyllis A A. Gimotty, Barbara L L. Weber, George Coukos posted to cancer cgh copy_number human microarray microrna by ealloza on 2006-10-20 16:10:39 as along with 7 people and 2 groups abhattac eckart_bindewald mtagaya cmm Garamonfok maralena jfr FAB-lab BioinfoCIPF
	The Conserved Mec1/Rad53 Nuclear Checkpoint Pathway Regulates Mitochondrial DNA Copy Number in Saccharomyces cerevisiae [My Copy] Mol. Biol. Cell, Vol. 16, No. 6. (1 June 2005), pp. 3010-3018. by Sean D. Taylor, Hong Zhang, Jana S. Eaton, et al.Matthew S. Rodeheffer, Maria A. Lebedeva, Thomas W. O'Rourke, Wolfram Siede, Gerald S. Shadel posted to copy_number dna_damage mitochdonria rad53 by tuck on 2006-05-27 12:02:28 as
	Genetic regulators of large-scale transcriptional signatures in cancer. [My Copy] Nature genetics, Vol. 38, No. 4. (05 April 2006), pp. 421-430. by Adam S. Adler, Meihong Lin, Hugo Horlings, Dimitry S. Nuyten, Marc J. van de Vijver, Howard Y. Chang posted to cgh copy_number microarray transcription_factor by tuck on 2006-04-28 06:13:46 as along with 6 people rdiaz huiminC jfr ccots Ao_Li2007 oelemento

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cgh	9
aberration	8
cancer	8
expression	8
human	8
microarray	8
drosophila	6
transposable_elements	6
genetics	5
quals	5
chromosome	4
microrna	4
simulans	4
melanogaster	3
snp	3
database	2
deletion	2
hmm	2
mouse	2
natural	2
network	2
population	2
selection	2
16s	1
acgh	1
bacteria	1
breast_cancer	1
comparative	1
dna_damage	1
duplication	1
e_coli	1
feedback	1
functional_annotation	1
gene_expression	1
gene_regulation	1
genomics	1
mitochdonria	1
motif	1
natural_populations	1
network_motifs	1
ngs	1
ninja	1
number	1
operon	1
pathway	1
rad53	1
regulation	1
repressilator	1
schizophrenia	1
segmentation	1
stochastic	1
syndrome	1
transcription	1
transcription_factor	1
worldwide_distribution	1

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