Tag correlated_mutations [54 articles] Export

Recent papers classified by the tag correlated_mutations.

	A combinatorial approach to detect coevolved amino acid networks in protein families of variable divergence. [My Copy] PLoS computational biology, Vol. 5, No. 9. (4 September 2009), e1000488. by Julie Baussand, Alessandra Carbone posted to correlated_mutations bioinformatics by sobolevnrm on 2009-10-31 00:58:00 as along with 6 people and 1 group dfdong anuragsethi phoenixzxl maren barry zwang Bioinformatics
	Integration of evolutionary features for the identification of functionally important residues in major facilitator superfamily transporters. [My Copy] PLoS computational biology, Vol. 5, No. 10. (2 October 2009), e1000522. by Jouhyun Jeon, Jae-Seong S. Yang, Sanguk Kim posted to sequence_conservation correlated_mutations by barry to the group structural_bioinformatics on 2009-10-30 17:47:40 as along with 2 people and 1 group dfdong barriot Bioinformatics
	Protein sectors: evolutionary units of three-dimensional structure. [My Copy] Cell, Vol. 138, No. 4. (21 August 2009), pp. 774-786. by Najeeb Halabi, Olivier Rivoire, Stanislas Leibler, Rama Ranganathan posted to structure protein evolution correlated_mutations by pansapiens on 2009-09-22 05:42:53 as along with 10 people and 1 group yyfwuhan cmzmasek dgront robfsouza pablocarb vvoorr biomcgary dayjm jwm jbhiatt Marcotte_Lab
	InterMap3D: predicting and visualizing co-evolving protein residues [My Copy] Bioinformatics, Vol. 25, No. 15. (1 August 2009), pp. 1963-1965. by Rodrigo Gouveia-Oliveira, Francisco S. Roque, Rasmus Wernersson, et al.Thomas Sicheritz-Ponten, Peter W. Sackett, Anne Molgaard, Anders G. Pedersen posted to correlated_mutations bioinformatics by sobolevnrm on 2009-09-01 12:43:23 as along with 4 people and 1 group ollieredfernwork friendpine carlosjavierna phoenixzxl Orengo Group Journal Picks
	Correlated Mutation Analysis on the Catalytic Domains of Serine/Threonine Protein Kinases [My Copy] PLoS ONE, Vol. 4, No. 6. (15 June 2009), e5913. by Feng Xu, Pan Du, Hongbo Shen, et al.Hairong Hu, Qi Wu, Jun Xie, Long Yu posted to bioinformatics correlated_mutations by sobolevnrm on 2009-07-02 12:58:40 as along with 3 people qluo dimka hryk
	Identification of Coevolving Residues and Coevolution Potentials Emphasizing Structure, Bond Formation and Catalytic Coordination in Protein Evolution [My Copy] PLoS ONE, Vol. 4, No. 3. (10 March 2009), e4762. by Daniel Y. Little, Lu Chen posted to bioinformatics correlated_mutations by sobolevnrm to the group baker-group on 2009-03-26 11:32:37 as along with 1 person min013
	Graphical models of protein-protein interaction specificity from correlated mutations and interaction data [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 76, No. 4. (2 February 2009), pp. 911-929. by John Thomas, Naren Ramakrishnan, Chris Bailey-Kellogg posted to correlated_mutations pdz protein_protein by barry on 2009-03-25 21:58:54 as along with 5 people and 2 groups dfdong sobolevnrm AliC qluo RebeccaHamer Orengo Group Journal Picks baker-group
	Correlated mutation analyses on super-family alignments reveal functionally important residues. [My Copy] Proteins, Vol. 76, No. 3. (15 August 2009), pp. 608-616. by Remko K. Kuipers, Henk-Jan J. Joosten, Eugene Verwiel, et al.Sjoerd Paans, Jasper Akerboom, John van der Oost, Nicole G. Leferink, Willem J. van Berkel, Gert Vriend, Peter J. Schaap posted to correlated_mutations sca by barry to the group Bioinformatics on 2009-03-25 21:30:22 as along with 5 people and 2 groups mgomes qluo AliC RebeccaHamer sobolevnrm Orengo Group Journal Picks baker-group
	Computing highly correlated positions using mutual information and graph theory for G protein-coupled receptors. [My Copy] PloS one, Vol. 4, No. 3. (5 March 2009), e4681. by Sarosh N. Fatakia, Stefano Costanzi, Carson C. Chow posted to bioinformatics correlated_mutations by sobolevnrm to the group baker-group on 2009-03-25 11:36:12 as along with 1 person xdeupi
	Coevolution in defining the functional specificity [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 75, No. 1. (April 2009), pp. 231-240. by Saikat Chakrabarti, Anna R. Panchenko posted to correlated_mutations sca by barry on 2009-03-16 06:42:13 as along with 2 people qluo jameswasmuth
	Two Separate Interfaces between the Voltage Sensor and Pore Are Required for the Function of Voltage-Dependent K+ Channels [My Copy] PLoS Biology, Vol. 7, No. 3. (1 March 2009), e47. by Seok-Yong Lee, Anirban Banerjee, Roderick Mackinnon posted to bioinformatics correlated_mutations ion_channels by sobolevnrm to the group baker-group on 2009-03-12 12:32:31 as along with 1 person tyrell_turing
	Correlated Evolution of Interacting Proteins: Looking Behind the Mirrortree [My Copy] Journal of Molecular Biology, Vol. 385, No. 1. (09 January 2009), pp. 91-98. by M. Kann, B. Shoemaker, A. Panchenko, T. Przytycka posted to bioinformatics correlated_mutations by sobolevnrm to the group baker-group on 2009-03-12 12:31:03 as along with 11 people and 1 group mgomes biomcgary chica druvus mhofree grahamc barry zwang marti reyez paulschlesinger Bioinformatics
	Identification of direct residue contacts in protein–protein interaction by message passing [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 1. (6 January 2009), pp. 67-72. by Martin Weigt, Robert A. White, Hendrik Szurmant, James A. Hoch, Terence Hwa posted to allostery bioinformatics correlated_mutations structure by sobolevnrm to the group baker-group on 2009-03-05 12:34:10 as along with 6 people and 1 group orr cactus haisent sjcockell akraemer hmk KeatingJClub
	Surface Sites for Engineering Allosteric Control in Proteins [My Copy] Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442. by Jeeyeon Lee, Madhusudan Natarajan, Vishal C. Nashine, et al.Michael Socolich, Tina Vo, William P. Russ, Stephen J. Benkovic, Rama Ranganathan posted to allostery correlated_mutations by sobolevnrm to the group baker-group on 2009-01-28 13:10:50 as along with 7 people and 3 groups jbhiatt lflorez cactus marck i000 barry paulschlesinger structural_bioinformatics McCammon Bioinformatics
	Protein co-evolution, co-adaptation and interactions. [My Copy] The EMBO journal, Vol. 27, No. 20. (22 October 2008), pp. 2648-2655. by Florencio Pazos, Alfonso Valencia posted to correlated_mutations phylogeny protein_protein review by barry to the group structural_bioinformatics on 2008-10-02 20:24:17 as along with 8 people and 2 groups chica biomcgary qluo balicea grahamc fhsantanna marti sjcockell McCammon Bioinformatics
	Statistical Coupling Analysis of Aspartic Proteinases Based on Crystal Structures of the Trichoderma reesei Enzyme and Its Complex with Pepstatin A [My Copy] Journal of Molecular Biology, Vol. 382, No. 3. (10 October 2008), pp. 763-778. by Alessandro S. Nascimento, Sandra Krauchenco, Alexander M. Golubev, Alla Gustchina, Alexander Wlodawer, Igor Polikarpov posted to correlated_mutations protein_sequence protein_structure sca by barry on 2008-09-04 02:24:58 as
	Can correlated mutations in protein domain families be used for protein design? [My Copy] Brief Bioinform, Vol. 2, No. 3. (1 January 2001), pp. 279-288. by Sylvia B. Nagl posted to correlated_mutations by jteyra on 2008-08-19 09:28:52 as along with 1 person Lombardo_7
	The prediction of protein contacts from multiple sequence alignments. [My Copy] Protein Eng, Vol. 9, No. 11. (November 1996), pp. 941-948. by D. J. Thomas, G. Casari, C. Sander posted to correlated_mutations by jteyra on 2008-08-19 09:23:36 as along with 1 person gbart
	Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis† [My Copy] Biochemistry, Vol. 47, No. 30. (1 July 2008), pp. 7782-7784. by Hendrik Szurmant, Benjamin G. Bobay, Robert A. White, et al.Daniel M. Sullivan, Richele J. Thompson, Terence Hwa, James A. Hoch, John Cavanagh posted to correlated_mutations dynamics histidine-kinase kinase nmr protein signaling two-component by pansapiens on 2008-07-12 03:00:13 as along with 5 people and 1 group orr raik marck neils paulschlesinger KeatingJClub
	Correlated mutations and residue contacts in proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 18, No. 4. (April 1994), pp. 309-317. by Ulrike Göbel, Chris Sander, Reinhard Schneider, Alfonso Valencia posted to correlated_mutations ppi by jteyra on 2008-07-10 15:58:36 as along with 9 people mgomes qluo RebeccaHamer mcbla gbart analogAI dgront cjeans Lombardo_7
	Analysis of correlated mutations in HIV-1 protease using spectral clustering [My Copy] Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1243-1250. by Ying Liu, Eran Eyal, Ivet Bahar posted to correlated_mutations quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2008-06-20 11:35:34 as along with 3 people RebeccaHamer Ema bmaust
	Reassessing a sparse energetic network within a single protein domain [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 12. (25 March 2008), pp. 4679-4684. by Celestine N. Chi, Lisa ElfstrÃ¶m, Yao Shi, Tord SnÃ¤ll, Ãke EngstrÃ¶m, Per Jemth posted to allostery correlated_mutations by sobolevnrm on 2008-04-30 11:02:56 as along with 6 people and 1 group choonpeng barry apaydin cjeans cactus sunhwan baker-group
	Analysis of the residue-residue coevolution network and the functionally important residues in proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2008), NA. by Byung-Chul Lee, Keunwan Park, Dongsup Kim posted to correlated_mutations protein_sequence protein_structure by barry to the group structural_bioinformatics on 2008-03-20 00:40:27 as along with 7 people and 1 group neils sobolevnrm mingzhi penpen926 scienbox wilbur friendpine baker-group
	The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction [My Copy] BMC Bioinformatics, Vol. 9, No. 1. (2008) by Jonathan Manning, Emily Jefferson, Geoffrey Barton posted to bioinformatics correlated_mutations by sobolevnrm to the group baker-group on 2008-02-26 11:59:01 as along with 3 people nklee laughcry dgront
	Mutual Information Without the Influence of Phylogeny or Entropy Dramatically Improves Residue Contact Prediction [My Copy] Bioinformatics, Vol. 24, No. 3. (5 December 2007), pp. btm604-340. by S. D. Dunn, L. M. Wahl, G. B. Gloor posted to bioinformatics correlated_mutations by sobolevnrm to the group baker-group on 2008-01-31 12:19:53 as along with 5 people mgomes qluo bicko zwang marck
	An integrated system for studying residue coevolution in proteins [My Copy] Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 290-292. by Kevin Y. Yip, Prianka Patel, Philip M. Kim, Donald M. Engelman, Drew Mcdermott, Mark Gerstein posted to bioinformatics correlated_mutations by sobolevnrm to the group baker-group on 2008-01-14 12:28:24 as along with 6 people leemond31 qluo marck chrys friendpine ca3295
	Detecting coevolution in and among protein domains. [My Copy] PLoS computational biology, Vol. 3, No. 11. (1 November 2007), e211. by Chen-Hsiang H. Yeang, David Haussler posted to bioinformatics correlated_mutations by sobolevnrm to the group baker-group on 2008-01-03 12:32:12 as along with 13 people dfdong martainn balicea skhadar zwang niallhaslam hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray
	Evolution of protein sequences and structures. [My Copy] J Mol Biol, Vol. 291, No. 4. (27 August 1999), pp. 977-995. by T. C. Wood, W. R. Pearson posted to bioinformatics correlated_mutations by sobolevnrm to the group baker-group on 2007-12-19 12:35:44 as along with 2 people and 2 groups ana rabio structural_bioinformatics Bioinformatics
	Correlated substitution analysis and the prediction of amino acid structural contacts [My Copy] Brief Bioinform, Vol. 9, No. 1. (1 January 2008), pp. 46-56. by David S. Horner, Walter Pirovano, Graziano Pesole posted to correlated_mutations review by barry to the group structural_bioinformatics on 2007-11-27 23:34:46 as along with 7 people and 2 groups dfdong mgomes qluo RebeccaHamer zwang sobolevnrm Lombardo_7 Bioinformatics baker-group
	Contact rearrangements form coupled networks from local motions in allosteric proteins [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA. by Michael D. Daily, Tarak J. Upadhyaya, Jeffrey J. Gray posted to allostery correlated_mutations molecular_simulation quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm to the group baker-group on 2007-11-08 12:54:28 as
	The CHAIN program: forging evolutionary links to underlying mechanisms [My Copy] Trends in Biochemical Sciences, Vol. 32, No. 11. (November 2007), pp. 487-493. by Andrew F. Neuwald posted to bioinformatics correlated_mutations software by sobolevnrm to the group baker-group on 2007-11-01 17:28:53 as
	Predicting Allosteric Communication in Myosin via a Pathway ofConserved Residues [My Copy] Journal of Molecular Biology, Vol. In Press, Accepted Manuscript by Susan Tang, Jung-Chi Liao, Alexander R. Dunn, Russ B. Altman, James A. Spudich, Jeanette P. Schmidt posted to allostery bioinformatics correlated_mutations by sobolevnrm on 2007-09-04 12:46:29 as along with 5 people and 2 groups barry choonpeng cactus jlh64 melting structural_bioinformatics baker-group
	How Directional Translocation is Regulated in a DNA Helicase Motor [My Copy] Biophys. J. (17 August 2007), biophysj.107.109546. by Jin Yu, Taekjip Ha, Klaus Schulten posted to allostery helicase correlated_mutations quasiharmonic_models by sobolevnrm on 2007-08-26 19:58:10 as along with 1 group baker-group
	Allosteric determinants in guanine nucleotide-binding proteins. [My Copy] Proc Natl Acad Sci U S A, Vol. 100, No. 24. (25 November 2003), pp. 14445-14450. by M. E. Hatley, S. W. Lockless, S. K. Gibson, A. G. Gilman, R. Ranganathan posted to sca g_proteins correlated_mutations contacts by barry to the group Bioinformatics on 2007-02-05 21:58:17 as along with 5 people and 4 groups qluo lna Einat marcius caporaso structural_bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF
	Effective use of sequence correlation and conservation in fold recognition. [My Copy] Journal of molecular biology, Vol. 293, No. 5. (12 November 1999), pp. 1221-1239. by O. Olmea, B. Rost, A. Valencia posted to correlated_mutations fold_discrimination fold_recognition by gbart on 2006-10-06 12:09:49 as along with 2 people qluo cjeans
	Mapping pathways of allosteric communication in GroEL by analysis of correlated mutations [My Copy] Proteins: Structure, Function, and Genetics, Vol. 48, No. 4. (1 September 2002), pp. 611-617. by Itamar Kass, Amnon Horovitz posted to correlated_mutations by gbart on 2006-10-06 12:06:50 as along with 2 people mgomes qluo
	Analysis of covariation in an SH3 domain sequence alignment: applications in tertiary contact prediction and the design of compensating hydrophobic core substitutions. [My Copy] J Mol Biol, Vol. 303, No. 3. (27 October 2000), pp. 433-446. by S. M. Larson, A. A. Di Nardo, A. R. Davidson posted to correlated_mutations by gbart on 2006-10-06 12:06:15 as along with 6 people and 2 groups ana analogAI Haggan cjeans tale bethbromley structural_bioinformatics Bioinformatics
	Positional dependence, cliques, and predictive motifs in the bHLH protein domain. [My Copy] J Mol Evol, Vol. 48, No. 5. (May 1999), pp. 501-516. by W. R. Atchley, W. Terhalle, A. Dress posted to correlated_mutations by gbart on 2006-10-06 12:05:38 as
	How frequent are correlated changes in families of protein sequences? [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 91, No. 1. (4 January 1994), pp. 98-102. by E. Neher posted to correlated_mutations by gbart on 2006-10-06 12:04:55 as along with 3 people qluo Haggan friendpine
	Detection and reduction of evolutionary noise in correlated mutation analysis [My Copy] Protein Engineering, Design and Selection, Vol. 18, No. 5. (1 May 2005), pp. 247-253. by Orly Noivirt, Miriam Eisenstein, Amnon Horovitz posted to correlated_mutations by gbart on 2006-10-04 16:26:46 as along with 3 people and 2 groups orr barry cjeans structural_bioinformatics Bioinformatics
	Natural Selection for Kinetic Stability Is a Likely Origin of Correlations between Mutational Effects on Protein Energetics and Frequencies of Amino Acid Occurrences in Sequence Alignments. [My Copy] J Mol Biol, Vol. 362, No. 5. (6 October 2006), pp. 966-978. by R. Godoy-Ruiz, F. Ariza, D. Rodriguez-Larrea, R. Perez-Jimenez, B. Ibarra-Molero, J. M. Sanchez-Ruiz posted to correlated_mutations by gbart on 2006-10-04 16:25:41 as
	A simple tool to explore the distance distribution of correlated mutations in proteins. [My Copy] Biophys Chem, Vol. 119, No. 3. (1 February 2006), pp. 240-246. by R. Perez-Jimenez, R. Godoy-Ruiz, A. Parody-Morreale, B. Ibarra-Molero, J. M. Sanchez-Ruiz posted to correlated_mutations by gbart on 2006-10-04 16:24:52 as along with 1 person Lombardo_7
	Correlated mutations: Advances and limitations. A study on fusion proteins and on the Cohesin-Dockerin families [My Copy] Proteins: Structure, Function, and Bioinformatics, Vol. 63, No. 4. (1 June 2006), pp. 832-845. by Inbal Halperin, Haim Wolfson, Ruth Nussinov posted to correlated_mutations by gbart on 2006-10-04 16:24:06 as along with 11 people dfdong mgomes qluo RebeccaHamer bicko ramensky cjeans tale mingzhi friendpine Lombardo_7
	Can three-dimensional contacts in protein structures be predicted by analysis of correlated mutations? [My Copy] Protein engineering, Vol. 7, No. 3. (1 March 1994), pp. 349-358. by I. N. Shindyalov, N. A. Kolchanov, C. Sander posted to 3d_contacts correlated_mutations by gbart on 2006-10-04 16:22:16 as along with 4 people stharward qluo nirfriedman kieran101
	Local complexity of amino acid interactions in a protein core. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 1. (6 January 2004), pp. 111-116. by R. K. Jain, R. Ranganathan posted to core_residues core_structure correlated_mutations protein_design protein_structure by barry on 2006-09-29 19:24:22 as along with 5 people and 4 groups ana lna marcius gbart choonpeng structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
	On Evolutionary Conservation of Thermodynamic Coupling in Proteins [My Copy] Journal of Biological Chemistry, Vol. 279, No. 18. (30 April 2004), pp. 19046-19050. by Anthony A. Fodor, Richard W. Aldrich posted to contacts correlated_motions correlated_mutations pdz sequence_comparison by barry on 2006-01-25 04:17:37 as along with 8 people and 2 groups dfdong ana gbart cjeans tale friendpine ca3295 Lombardo_7 structural_bioinformatics Bioinformatics
	Intramolecular Signaling Pathways Revealed by Modeling Anisotropic Thermal Diffusion [My Copy] Journal of Molecular Biology, Vol. 351, No. 2. (12 August 2005), pp. 345-354. by Nobuyuki Ota, David A. Agard posted to allosteric contacts correlated_motions correlated_mutations md_simulation by barry to the group structural_bioinformatics on 2006-01-24 18:24:55 as along with 3 people and 1 group pansapiens lna choonpeng Bioinformatics
	Statistical coevolution analysis and molecular dynamics: identification of amino acid pairs essential for catalysis. [My Copy] Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 994-999. by R. A. Estabrook, J. Luo, M. M. Purdy, et al.V. Sharma, P. Weakliem, T. C. Bruice, N. O. Reich posted to correlated_motions correlated_mutations protein_design protein_dynamics protein_evolution by barry on 2005-10-26 00:16:13 as along with 5 people and 2 groups dfdong ana pansapiens dimka gbart structural_bioinformatics Bioinformatics
	Influence of conservation on calculations of amino acid covariance in multiple sequence alignments. [My Copy] Proteins, Vol. 56, No. 2. (1 August 2004), pp. 211-221. by Anthony A. Fodor, Richard W. Aldrich posted to correlated_mutations multiple_sequence_alignment protein_evolution protein_sequence protein_structure statistical_coupling_analysis by ana on 2005-09-27 22:05:54 as along with 10 people and 2 groups dfdong mgomes qluo RebeccaHamer gbart cjeans jlh64 mingzhi dgront Lombardo_7 structural_bioinformatics Bioinformatics
	Evolutionary information for specifying a protein fold [My Copy] Nature, Vol. 437, No. 7058., pp. 512-518. by Michael Socolich, Steve W. Lockless, William P. Russ, Heather Lee, Kevin H. Gardner, Rama Ranganathan posted to correlated_mutations protein_evolution protein_sequence protein_structure statistical_coupling_analysis by ana to the group structural_bioinformatics on 2005-09-22 23:02:40 as along with 17 people and 4 groups krapnik dfdong ucbcjbm barry lna bpb Einat balajis marcius gbart analogAI nirfriedman caporaso massivemayhem mingzhi bethbromley ca3295 Bioinformatics biomedical-nlp BioinfoCIPF SGU-CIPF

Note: You may cite this page as: http://www.citeulike.org/tag/correlated_mutations

Result page: 1 2 Next

bioinformatics	34
protein_sequence	24
protein_structure	22
protein_design	21
statistical_coupling_analysis	15
protein_evolution	14
allostery	11
sca	11
sequence_comparison	10
allosteric	7
bioinf_methods	7
contacts	7
protein_protein	7
review	7
correlated_motions	5
phylogeny	4
g_proteins	3
md_simulation	3
multiple_sequence_alignment	3
protein_folding	3
protein_function	3
quasiharmonic-models_elastic-network_gnm_nma_pca_etc	3
quasiharmonic_models	3
sequence_conservation	3
structure	3
helicase	2
ion_channels	2
molecular_simulation	2
pdz	2
protein	2
protein-protein_interactions	2
software	2
3d_contacts	1
core_residues	1
core_structure	1
dynamics	1
evolution	1
fold_discrimination	1
fold_recognition	1
histidine-kinase	1
kinase	1
nmr	1
ppi	1
protein_dynamics	1
signaling	1
two-component	1

Tag correlated_mutations [54 articles] Export

Related Tags