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Tag cross-species [41 articles]

Recent papers classified by the tag cross-species.
  • 4DXpress: a database for cross-species expression pattern comparisons.
    Nucleic Acids Res (4 October 2007)
    by Yannick Haudry, Hugo Berube, Ivica Letunic, Paul-Daniel D Weeber, Julien Gagneur, Charles Girardot, Misha Kapushesky, Detlev Arendt, Peer Bork, Alvis Brazma, Eileen Furlong, Joachim Wittbrodt, Thorsten Henrich
    posted to cross-species expression fruitfly gene hybridization in medaka mouse situ zebrafish by ptrobajo on 2008-05-05 21:58:01 as ** along with 2 people jyuh ghattem
  • Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri.
    The Plant journal : for cell and molecular biology, Vol. 37, No. 2. (January 2004), pp. 251-268.
    by M Becher, IN Talke, L Krall, U Krämer
    posted to cross-species halleri metal sara thaliana by ptrobajo on 2008-05-07 16:17:38 as ** along with 1 person balicea
  • Identification of a Common Gene Expression Response in Different Lung Inflammatory Diseases in Rodents and Macaques
    PLoS ONE, Vol. 3, No. 7. (July 2008), e2596.
    by Jeroen L Pennings, Tjeerd G Kimman, Riny Janssen
    posted to rodent microarray macaques lung cross-species by ptrobajo on 2008-10-07 12:47:02 as **
  • Combined Analysis of Murine and Human Microarrays and ChIP Analysis Reveals Genes Associated with the Ability of MYC To Maintain Tumorigenesis
    PLoS Genet, Vol. 4, No. 6. (6 June 2008), e1000090.
    by Chi-Hwa Wu, Debashis Sahoo, Constadina Arvanitis, Nicole Bradon, David L Dill, Dean W Felsher
    posted to cross-species factor human microarray mouse myc transcription by ptrobajo on 2008-06-18 09:07:56 as ** along with 1 person tibbitts
  • Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors.
    The Plant journal : for cell and molecular biology, Vol. 37, No. 2. (January 2004), pp. 269-281.
    by M Weber, E Harada, C Vess, E Roepenack-Lahaye, S Clemens
    posted to cross-species halleri metal sara thaliana by ptrobajo on 2008-05-07 16:33:22 as **
  • Genetics of gene expression and its effect on disease
    Nature (16 March 2008)
    by Valur Emilsson, Gudmar Thorleifsson, Bin Zhang, Amy S Leonardson, Florian Zink, Jun Zhu, Sonia Carlson, Agnar Helgason, Bragi G Walters, Steinunn Gunnarsdottir, Magali Mouy, Valgerdur Steinthorsdottir, Gudrun H Eiriksdottir, Gyda Bjornsdottir, Inga Reynisdottir, Daniel Gudbjartsson, Anna Helgadottir, Aslaug Jonasdottir, Adalbjorg Jonasdottir, Unnur Styrkarsdottir, Solveig Gretarsdottir, Kristinn P Magnusson, Hreinn Stefansson, Ragnheidur Fossdal, Kristleifur Kristjansson, Hjortur G Gislason, Tryggvi Stefansson, Bjorn G Leifsson, Unnur Thorsteinsdottir, John R Lamb, Jeffrey R Gulcher, Marc L Reitman, Augustine Kong, Eric E Schadt, Kari Stefansson
    posted to cross-species network quantitative trait by ptrobajo on 2008-04-05 21:43:55 as ** along with 13 people and 1 group brianb djkt lp2 jo_davies shikin caseybrown vplagnol smbe2008 echinotrix natstreet sanchezbuelna jyuh Borelli GeneGo
  • Employing conservation of co-expression to improve functional inference
    BMC Systems Biology, Vol. 2, No. 1. (2008)
    by Carsten Daub, Erik Sonnhammer
    posted to protein function cross-species coexpression by ptrobajo on 2008-10-08 23:24:49 as ** along with 5 people pengchy natstreet lptolik klo barriot
  • MANTIS, a phylogenetic framework for multi-species genome comparisons.
    Bioinformatics (19 November 2007)
    by Raphaël Helaers, Athanasia C C Tzika, Yves Van de Peer, Michel C C Milinkovitch
    posted to comparative cross-species function phylogeny by ptrobajo on 2008-08-19 20:55:41 as ** along with 1 person grahamc
  • Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
    Genome Biology, Vol. 8 (10 May 2007), R76.
    by Jason I Herschkowitz, Karl Simin, Victor J Weigman, Igor Mikaelian, Jerry Usary, Zhiyuan Hu, Karen E Rasmussen, Laundette P Jones, Shahin Assefnia, Subhashini Chandrasekharan, Michael G Backlund, Yuzhi Yin, Andrey I Khramtsov, Roy Bastein, John Quackenbush, Robert I Glazer, Powel H Brown, Jeffrey E Green, Levy Kopelovich, Priscilla A Furth, Juan P Palazzo, Olufunmilayo I Olopade, Philip S Bernard, Gary A Churchill, Terry Van Dyke, Charles M Perou
    posted to cancer cross-species human microarray mouse by ptrobajo on 2008-07-14 21:52:03 as **
  • Evolutionary plasticity of genetic interaction networks
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 390-391.
    by Julia Tischler, Ben Lehner, Andrew G Fraser
    posted to cross-species genetic interaction by ptrobajo on 2008-04-05 21:41:31 as ** along with 4 people and 1 group caseybrown smgomez emptyhb zwang GomezLab
  • A neutral model of transcriptome evolution.
    PLoS biology, Vol. 2, No. 5. (May 2004)
    by P Khaitovich, G Weiss, M Lachmann, I Hellmann, W Enard, B Muetzel, U Wirkner, W Ansorge, S Pääbo
    posted to affymetrix chimpanzee cross-species human sara by ptrobajo on 2008-05-08 15:12:41 as **
  • Comparative transcriptome analysis of toxic metal responses in Arabidopsis thaliana and the Cd(2+)-hypertolerant facultative metallophyte Arabidopsis halleri.
    Plant, cell & environment, Vol. 29, No. 5. (May 2006), pp. 950-963.
    by M Weber, A Trampczynska, S Clemens
    posted to cadmium cross-species halleri sara thaliana by ptrobajo on 2008-05-07 16:34:13 as **
  • Using DNA microarrays to study gene expression in closely related species.
    Bioinformatics, Vol. 23, No. 10. (15 May 2007), pp. 1235-1242.
    by A Oshlack, AE Chabot, GK Smyth, Y Gilad
    posted to cross-species multi-primate sara by ptrobajo on 2008-05-07 16:24:14 as ** along with 2 people jyuh stajich
  • Identification of distinct molecular phenotypes in acute megakaryoblastic leukemia by gene expression profiling
    Proceedings of the National Academy of Sciences, Vol. 103, No. 9. (28 February 2006), pp. 3339-3344.
    by Jean-Pierre Bourquin, Aravind Subramanian, Claudia Langebrake, Dirk Reinhardt, Olivier Bernard, Paola Ballerini, Andre Baruchel, Helene Cave, Nicole Dastugue, Henrik Hasle, Gertjan L Kaspers, Michel Lessard, Lucienne Michaux, Paresh Vyas, Elisabeth van Wering, Christian M Zwaan, Todd R Golub, Stuart H Orkin
    posted to cross-species gsea human mouse by ptrobajo on 2008-04-05 22:31:41 as **
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
    posted to cross-species network quantitative trait by ptrobajo on 2008-04-05 21:46:48 as ** along with 14 people and 1 group brianb jbsaltz djkt raiyar lp2 jo_davies shikin caseybrown jyuh echinotrix natstreet sanchezbuelna jfr chrisamiller GeneGo
  • Novel insights into the relationships between dendritic cell subsets in human and mouse revealed by genome-wide expression profiling
    Genome Biology, Vol. 9 (24 January 2008), R17.
    by Scott H Robbins, Thierry Walzer, Doulaye Dembele, Christelle Thibault, Axel Defays, Gilles Bessou, Huichun Xu, Eric Vivier, Maclean Sellars, Philippe Pierre, Franck R Sharp, Susan Chan, Philippe Kastner, Marc Dalod
    posted to cross-species expression gene human immunology mouse by ptrobajo on 2008-04-04 22:26:29 as **
  • A method for cross-species gene expression analysis with high-density oligonucleotide arrays.
    Nucleic acids research, Vol. 32, No. 11. (2004)
    by W Ji, W Zhou, K Gregg, N Yu, S Davis, S Davis
    posted to affymetrix cross-species sara by ptrobajo on 2008-05-07 16:20:47 as **
  • Zebrafish Whole-Adult-Organism Chemogenomics for Large-Scale Predictive and Discovery Chemical Biology
    PLoS Genet, Vol. 4, No. 7. (11 July 2008), e1000121.
    by Siew H Lam, Sinnakarupan Mathavan, Yan Tong, Haixia Li, Karuturi, Yilian Wu, Vinsensius B Vega, Edison T Liu, Zhiyuan Gong
    posted to chemogenomics cross-species zebrafish by ptrobajo on 2008-07-12 21:19:12 as ** along with 1 person jyuh
  • Evolutionary regulation of the blind subterranean mole rat, Spalax, revealed by genome-wide gene expression.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 47. (22 November 2005), pp. 17047-17052.
    by LI Brodsky, J Jacob-Hirsch, A Avivi, L Trakhtenbrot, S Zeligson, N Amariglio, A Paz, AB Korol, M Band, G Rechavi, E Nevo
    posted to cross-species mole rat sara by ptrobajo on 2008-05-07 16:32:14 as **
  • Cross-species microarray hybridizations: a developing tool for studying species diversity
    Trends in Genetics, Vol. 23, No. 4. (April 2007), pp. 200-207.
    by Carmiya Bar-Or, Henryk Czosnek, Hinanit Koltai
    posted to cross-species hybridizations microarray review sara by ptrobajo on 2008-05-07 16:11:52 as ** along with 4 people jyuh dchughes TaqSys balicea
  • Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection
    BMC Genomics, Vol. 8, No. 1. (2007)
    by Neil Graham, Martin Broadley, John Hammond, Philip White, Sean May
    posted to affymetrix arabidopsis cross-species rice sara by ptrobajo on 2008-05-07 16:22:25 as ** along with 2 people jyuh natstreet
  • Quantitative evidence for conserved longevity pathways between divergent eukaryotic species
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 564-570.
    by Erica D Smith, Mitsuhiro Tsuchiya, Lindsay A Fox, Nick Dang, Di Hu, Emily O Kerr, Elijah D Johnston, Bie N Tchao, Diana N Pak, Linnea K Welton, Daniel E Promislow, James H Thomas, Matt Kaeberlein, Brian K Kennedy
    posted to age cross-species pathways by ptrobajo on 2008-06-18 13:49:43 as ** along with 3 people and 1 group tharris tmmurali wilbur C. elegans / WormBase
  • Prediction of human disease genes by human-mouse conserved coexpression analysis.
    PLoS computational biology, Vol. 4, No. 3. (March 2008)
    by U Ala, RM Piro, E Grassi, C Damasco, L Silengo, M Oti, P Provero, F Di Cunto
    posted to prioritization mouse human expression disease cross-species conserved by ptrobajo on 2008-10-06 10:16:46 as ** along with 3 people jfr jyuh wenhui
  • Approaches to comparative sequence analysis: towards a functional view of vertebrate genomes
    Nat Rev Genet, Vol. 9, No. 4. (April 2008), pp. 303-313.
    by Elliott H Margulies, Ewan Birney
    posted to analysis comparative cross-species genomics sequence by ptrobajo on 2008-04-05 22:21:35 as ** along with 6 people carlfulp jyuh zwang mingzhi phoenixzxl natstreet
  • Identification of innate immunity genes and pathways using a comparative genomics approach
    Proceedings of the National Academy of Sciences (7 May 2008), 0802405105.
    by Scott Alper, Rebecca Laws, Brad Lackford, Windy A Boyd, Paul Dunlap, Jonathan H Freedman, David A Schwartz
    posted to celegans cross-species immunity mouse rnai by ptrobajo on 2008-05-13 07:54:06 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • Cross-species analysis of biological networks by Bayesian alignment.
    Proc Natl Acad Sci U S A, Vol. 103, No. 29. (18 July 2006), pp. 10967-10972.
    by J Berg, M Lässig
    posted to network evolution cross-species co-expression bayes by pengchy on 2008-10-09 07:08:30 as ** along with 4 people and 1 group jeremymiller jyuh adepace bpcusack EisenLab
  • Comparing genomic expression patterns across species identifies shared transcriptional profile in aging.
    Nat Genet, Vol. 36, No. 2. (February 2004), pp. 197-204.
    by SA McCarroll, CT Murphy, S Zou, SD Pletcher, CS Chin, YN Jan, C Kenyon, CI Bargmann, H Li
    posted to cross-species expression by pcahan1 on 2005-09-09 01:02:33 as ** along with 6 people and 1 group tharris tardigrade johncumbers koller eukfn jeremymiller C. elegans / WormBase
  • Factors influencing the identification of transcription factor binding sites by cross-species comparison.
    Genome Res, Vol. 12, No. 10. (October 2002), pp. 1523-1532.
    by LA McCue, W Thompson, CS Carmack, CE Lawrence
    posted to cross-species by nklee on 2007-09-30 23:52:11 as ***** along with 2 people kaarsinogen dquest
  • Comparative Pathway Analyzer--a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms.
    Nucleic acids research (6 June 2008)
    by Sebastian Oehm, David Gilbert, Andreas Tauch, Jens Stoye, Alexander Goesmann
    posted to pathway cross-species by jyuh on 2008-08-19 04:51:37 as ** along with 4 people maralena thomaskelder renatomilani beete
  • COMPARE, a multi-organism system for cross-species data comparison and transfer of information.
    Bioinformatics (1 December 2007)
    by David Salgado, Gregory Gimenez, François Coulier, Christophe Marcelle
    posted to microarray cross-species by jyuh on 2008-01-26 06:57:05 as **
  • Design factors that influence PCR amplification success of cross-species primers among 1147 mammalian primer pairs
    BMC Genomics, Vol. 7 (09 October 2006), 253.
    by Donna JE Housley, Zachary A Zalewski, Stephanie E Beckett, Patrick J Venta
    posted to cross-species pcr primer by jyuh on 2007-10-27 07:55:30 as **
  • 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser
    Genome Res. (5 November 2007), gr.6761107.
    by Webb Miller, Kate Rosenbloom, Ross C Hardison, Minmei Hou, James Taylor, Brian Raney, Richard Burhans, David C King, Robert Baertsch, Daniel Blankenberg, Kosakovsky, Anton Nekrutenko, Belinda Giardine, Robert S Harris, Svitlana Tyekucheva, Mark Diekhans, Thomas H Pringle, William J Murphy, Arthur Lesk, George M Weinstock, Kerstin Lindblad-Toh, Richard A Gibbs, Eric S Lander, Adam Siepel, David Haussler, James W Kent
    posted to database cross-species alignment by jyuh on 2008-07-18 06:11:50 as ** along with 10 people aprasad dchughes nklee maximilianh idonaldson fpattyn gjuggler clearbluespring joavah AaronDarling
  • Protein identification pipeline for the homology-driven proteomics.
    Journal of proteomics, Vol. 71, No. 3. (21 August 2008), pp. 346-356.
    by M Junqueira, V Spirin, TS Balbuena, H Thomas, I Adzhubei, S Sunyaev, A Shevchenko
    posted to proteomics cross-species by jyuh on 2008-10-10 04:49:58 as **
  • Hybridization of genomic DNA to microarrays: a challenge for the analysis of environmental samples.
    Journal of microbiological methods, Vol. 69, No. 2. (May 2007), pp. 242-248.
    by JC Avarre, P de Lajudie, G Béna
    posted to cross-species microarray by jyuh on 2008-09-01 05:28:29 as **
  • Inter-species normalization of gene mentions with GNAT.
    Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008)
    by J Hakenberg, C Plake, R Leaman, M Schroeder, G Gonzalez
    posted to cross-species name by jyuh on 2008-08-17 02:34:21 as ** along with 1 person graciela
  • Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package annotationTools
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Alexandre Kuhn, Ruth L Carter, Mauro Delorenzi
    posted to cross-platform cross-species microarray r by jyuh on 2008-01-26 07:09:07 as ** along with 10 people jfr balicea dullhunk ghattem RamuAnandakrishnan heliopais ablejec zhouyu bertelsen sanchezbuelna
  • Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by Y Lu, X He, S Zhong
    posted to cross-species microarray by ghattem on 2007-10-31 14:00:42 as ** along with 1 person jyuh
  • Species differences in brain gene expression profiles associated with adult behavioral maturation in honey bees
    BMC Genomics, Vol. 8 (29 June 2007), 202.
    by Moushumi S Sarma, Charles W Whitfield, Gene E Robinson
    posted to cross-species microarray pca by ghattem on 2008-03-03 20:40:22 as **
  • Conservation of Regional Gene Expression in Mouse and Human Brain
    PLoS Genetics, Vol. 3, No. 4. (1 April 2007), e59.
    by Andrew D Strand, Aaron K Aragaki, Zachary C Baquet, Angela Hodges, Philip Cunningham, Peter Holmans, Kevin R Jones, Lesley Jones, Charles Kooperberg, James M Olson
    posted to cross-species microarray by ghattem on 2007-11-01 19:07:21 as ** along with 7 people and 1 group jeremymiller nickluscombe Iden-J_GluR cjeans suizan ppark klo EBI-regulation
  • Metagene projection for cross-platform, cross-species characterization of global transcriptional states.
    Proc Natl Acad Sci U S A, Vol. 104, No. 14. (3 April 2007), pp. 5959-5964.
    by P Tamayo, D Scanfeld, BL Ebert, MA Gillette, CW Roberts, JP Mesirov
    posted to cross-species microarray by ghattem on 2007-10-31 13:56:26 as ** along with 6 people jyuh jfr oelemento aviad_work dragonrez nuin
  • Cross-Species Cluster Co-Conservation: A new method for generating protein interaction networks
    Genome Biology, Vol. 8 (05 September 2007), R185.
    by Anis Karimpour-Fard, Corrella S Detweiler, Kimberly D Erickson, Lawrence Hunter, Ryan T Gill
    posted to cross-species interaction_prediction ppi_network by dragonrez on 2007-10-12 23:10:14 as **
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