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Tag cutoff [14 articles]

Recent papers classified by the tag cutoff.
  • Structural and energetic effects of truncating long ranged interactions in ionic and polar fluids
    The Journal of Chemical Physics, Vol. 83, No. 11. (1985), pp. 5897-5908.
    by Charles L Brooks, Montgomery B Pettitt, Martin Karplus
    posted to cutoff md by RamuAnandakrishnan on 2007-12-17 21:27:23 as **
  • Interaction cutoff effect on ruggedness of protein-protein energy landscape
    Proteins: Structure, Function, and Bioinformatics, Vol. 70, No. 4. (2008), pp. 1498-1505.
    by Anatoly M Ruvinsky, Ilya A Vakser
    posted to cutoff electrostatics md by RamuAnandakrishnan on 2007-10-25 01:07:19 as *** along with 1 person bicko
  • Cutoff Size Need Not Strongly Influence Molecular Dynamics Results for Solvated Polypeptides
    Biochemistry, Vol. 44, No. 2. (18 January 2005), pp. 609-616.
    by DAC Beck, RS Armen, V Daggett
    posted to cutoff electrostatics md by RamuAnandakrishnan on 2007-12-03 20:40:03 as **
  • The effects of truncating long-range forces on protein dynamics.
    Proteins, Vol. 6, No. 1. (1989), pp. 32-45.
    by RJ Loncharich, BR Brooks
    posted to cutoff md by RamuAnandakrishnan on 2008-08-18 15:39:56 as **
  • Structure and dynamics of liquid water with different long-range interaction truncation and temperature control methods in molecular dynamics simulations
    Journal of Computational Chemistry, Vol. 23, No. 13. (2002), pp. 1211-1219.
    by Pekka Mark, Lennart Nilsson
    posted to cutoff electrostatics md by RamuAnandakrishnan on 2008-03-28 15:22:19 as **
  • Molecular dynamics studies of solvated polypeptides: Why the cut-off scheme does not work
    Chemical Physics, Vol. 168, No. 1. (1 December 1992), pp. 75-89.
    by H Schreiber, O Steinhauser
    posted to cutoff md by RamuAnandakrishnan on 2007-12-02 17:58:30 as **
  • Some fundamental problems for an energy-conserving adaptive-resolution molecular dynamics scheme
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 4. (2007)
    by Luigi Delle Site
    posted to cutoff electrostatics md by RamuAnandakrishnan on 2008-06-02 23:22:52 as **
  • Laser-assisted ion-atom collisions: Plateau, cutoff, and multiphoton peaks
    Physical Review A (Atomic, Molecular, and Optical Physics), Vol. 77, No. 2. (2008)
    by Marcelo F Ciappina, Lars B Madsen
    posted to additional_field cutoff increase_efficiency multiphoton plateau by qwerty on 2008-02-20 13:01:14 as **
  • High-Energy Cutoff in the Spectrum of Strong-Field Nonsequential Double Ionization
    Physical Review Letters, Vol. 96, No. 13. (2006)
    by JS Parker, BJS Doherty, KT Taylor, KD Schultz, CI Blaga, LF Dimauro
    posted to cutoff helium non-sequential-double-ionization by nogi on 2007-06-09 20:21:42 as *** along with 1 person feist
  • A stochastic model for the evolution of the web
    (2002)
    by M Levene, T Fenner, G Loizou, R Wheeldon
    posted to cutoff network simulation by mylit on 2007-03-27 08:58:09 as ** along with 1 person donade
  • Is the Ewald summation still necessary? Pairwise alternatives to the accepted standard for long-range electrostatics
    The Journal of Chemical Physics, Vol. 124, No. 23. (2006)
    by Christopher J Fennell, Daniel J Gezelter
    posted to algorithm binary cutoff dynamics ewald grid molecular pairwise summation by michaelbussmann on 2008-02-28 16:43:01 as ** along with 3 people and 1 group mikaellund OndrejMarsalek sobolevnrm baker-group
  • Protein flexibility prediction by an all-atom mean-field statistical theory.
    Protein Sci, Vol. 14, No. 7. (July 2005), pp. 1772-1777.
    by BP Pandey, C Zhang, X Yuan, J Zi, Y Zhou
    posted to confanal cutoff protein by jessicaopacic on 2006-11-06 12:23:56 as ** along with 3 people and 2 groups baaden aqeel yongzhao TSRI_MGL LabCompMed
  • STOP: searching for Transcription Factor motifs using gene expression.
    Bioinformatics (8 May 2007)
    by Libi Hertzberg, Shai Izraeli, Eytan Domany
    posted to threshold pwm gene_expression cutoff by dpollard to the group EisenLab on 2007-05-23 00:44:29 as * along with 1 person nuin
  • Total-variation cutoff in birth-and-death chains
    (13 Mar 2008)
    by Jian Ding, Eyal Lubetzky, Yuval Peres
    posted to mixing_times markov_chains cutoff by groobert on 2008-09-11 15:02:25 as read
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