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Tag data-generation-control [10 articles]

Recent papers classified by the tag data-generation-control.
  • notes A supervised hidden Markov model framework for efficiently segmenting tiling array data in transcriptional and ChIP-chip experiments: systematically incorporating validated biological knowledge.
    Bioinformatics (12 October 2006)
    by Jiang Du, Joel S S Rozowsky, Jan O O Korbel, Zhengdong D D Zhang, Thomas E E Royce, Martin H H Schultz, Michael Snyder, Mark Gerstein
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:34:08 as ** along with 7 people and 2 groups xingxu miguel tuck eckart_bindewald djkt SeungjoonOh blobbybirdman Bioinformatics UH - Computational Biology
  • notes Ringo - an R/Bioconductor package for analyzing ChIP-chip readouts
    BMC Bioinformatics, Vol. 8 (26 June 2007), 221.
    by Joern Toedling, Oleg Sklyar, Wolfgang Huber
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:26:16 as *** along with 5 people jyuh jfr ghattem hpaces caseybrown
  • notes BLAT--the BLAST-like alignment tool.
    Genome Res, Vol. 12, No. 4. (April 2002), pp. 656-664.
    by WJ Kent
    posted to alignments epigenetics data-generation-control by inesdesantiago on 2008-01-18 21:39:25 as ** along with 19 people and 1 group bozdagd gpappas talponer operon miguel pcahan1 Ayest indigoviolet mtagaya treangen michC djkt timflutre olympos cjeans wenhan natstreet antonkratz yoanjacquemin EisenLab
  • notes ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments
    Genomics, Vol. 83, No. 3. (March 2004), pp. 349-360.
    by Michael J Buck, Jason D Lieb
    posted to chip-chip epigenetics review data-generation-control by inesdesantiago on 2008-01-18 18:11:52 as *** along with 1 person epigenetics
  • notes Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
    Nature (01 July 2007)
    by Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, Georgia Giannoukos, Pablo Alvarez, William Brockman, Tae-Kyung Kim, Richard P Koche, William Lee, Eric Mendenhall, Aisling O’donovan, Aviva Presser, Carsten Russ, Xiaohui Xie, Alexander Meissner, Marius Wernig, Rudolf Jaenisch, Chad Nusbaum, Eric S Lander, Bradley E Bernstein
    posted to chipseq epigenetics data-generation-control by inesdesantiago on 2008-01-18 18:29:05 as * along with 12 people and 1 group jyuh brant dchughes vega kengg vplagnol olympos epigenetics bioyang cabbagezs rschulz slevy03 EisenLab
  • notes Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs
    Cell, Vol. 116, No. 4. (20 February 2004), pp. 499-509.
    by Simon Cawley, Stefan Bekiranov, Huck H Ng, Philipp Kapranov, Edward A Sekinger, Dione Kampa, Antonio Piccolboni, Victor Sementchenko, Jill Cheng, Alan J Williams, Raymond Wheeler, Brant Wong, Jorg Drenkow, Mark Yamanaka, Sandeep Patel, Shane Brubaker, Hari Tammana, Gregg Helt, Kevin Struhl, Thomas R Gingeras
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 18:48:45 as ** along with 1 person johncumbers
  • notes Tilescope: online analysis pipeline for high-density tiling microarray data
    Genome Biology, Vol. 8 (14 May 2007), R81.
    by Zhengdong D Zhang, Joel Rozowsky, Hugo YK Lam, Jiang Du, Michael Snyder, Mark Gerstein
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:31:40 as ** along with 2 people jfr caseybrown
  • notes TileMap: create chromosomal map of tiling array hybridizations
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3629-3636.
    by Hongkai Ji, Wing H Wong
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:24:08 as ** along with 3 people tuck dquest caseybrown
  • notes High-resolution computational models of genome binding events
    Nature Biotechnology, Vol. 24, No. 8. (09 August 2006), pp. 963-970.
    by Yuan Qi, Alex Rolfe, Kenzie D Macisaac, Georg K Gerber, Dmitry Pokholok, Julia Zeitlinger, Timothy Danford, Robin D Dowell, Ernest Fraenkel, Tommi S Jaakkola, Richard A Young, David K Gifford
    posted to epigenetics microarray-algorithms data-generation-control by inesdesantiago on 2008-01-18 21:22:26 as *** along with 4 people jfr wnpx ccr caseybrown
  • notes High-resolution profiling of histone methylations in the human genome.
    Cell, Vol. 129, No. 4. (18 May 2007), pp. 823-837.
    by A Barski, S Cuddapah, K Cui, TY Roh, DE Schones, Z Wang, G Wei, I Chepelev, K Zhao
    posted to chipseq data-analysis data-generation-control epigenetics histone-modifications mapping by inesdesantiago on 2008-01-18 18:33:43 as * along with 7 people and 1 group jyuh kengg sebastien_vigneau jackjackjjj ghattem epigenetics ksha Plantandetc
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