Tag data_integration [176 articles] Export

Recent papers classified by the tag data_integration.

	Reconstruction of the yeast Snf1 kinase regulatory network reveals its role as a global energy regulator [My Copy] Molecular Systems Biology, Vol. 5 (03 November 2009) by Renata Usaite, Michael C. Jewett, Ana P. Oliveira, John R. Yates, Lisbeth Olsson, Jens Nielsen posted to regulatory_network reconstruction protein_expression network expression_levels energy_regulator energy_metabolism data_integration carbon_metabolism ampk by greg on 2009-11-05 09:32:57 as along with 1 person pedrobeltrao
	Improved human disease candidate gene prioritization using mouse phenotype [My Copy] BMC Bioinformatics, Vol. 8, No. 1. (2007), 392. by Jing Chen, Huan Xu, Bruce Aronow, Anil Jegga posted to prioritization disease_gene disease data_integration candidate_gene_analysis candidate abstracts by jlike on 2009-11-03 11:42:53 as along with 4 people daforerog jeremymiller guhjy barriot
	Can Survival Prediction Be Improved By Merging Gene Expression Data Sets? [My Copy] PLoS ONE, Vol. 4, No. 10. (23 October 2009), e7431. by Haleh Yasrebi, Peter Sperisen, Viviane Praz, Philipp Bucher posted to machine_learning gene_expression_data data_merging data_integration by installe on 2009-10-26 09:42:02 as along with 1 person frohike
	Quarrying dataspaces: Schemaless profiling of unfamiliar information sources [My Copy] Data Engineering Workshops, 22nd International Conference on In Data Engineering Workshop, 2008. ICDEW 2008. IEEE 24th International Conference on, Vol. 0 (2008), pp. 270-277. by Bill Howe, David Maier, Nicolas Rayner, James Rucker posted to dataspaces data_integration by arjen on 2009-10-23 15:19:18 as along with 1 person rmbrad
	Integrating functional genomics data using maximum likelihood based simultaneous component analysis. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (16 October 2009), 340. by Robert A. van den Berg, Iven Van Mechelen, Tom F. Wilderjans, Katrijn Van Deun, Henk A. Kiers, Age K. Smilde posted to genomic_data data_integration by ashishanand on 2009-10-23 10:09:21 as along with 2 people and 1 group sillitoe ptrobajo Orengo Group Journal Picks
	Ontology-based data integration and decision support for product e-Design [My Copy] Robotics and Computer-Integrated Manufacturing, Vol. 25, No. 6. (31 December 2009), pp. 863-870. by Xiaomeng Chang, Janis Terpenny posted to ontology data_integration by ilepile on 2009-10-23 07:50:12 as
	Predicting eukaryotic transcriptional cooperativity by Bayesian network integration of genome-wide data [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 5943-5958. by Yong Wang, Xiang-Sun Zhang, Yu Xia posted to transcription_factors network_integration genomic_data data_integration by ashishanand on 2009-10-19 19:56:27 as along with 1 person guhjy
	Harnessing gene expression to identify the genetic basis of drug resistance [My Copy] Molecular Systems Biology, Vol. 5 (13 October 2009) by Bo-Juen Chen, Helen C. Causton, Denesy Mancenido, Noel L. Goddard, Ethan O. Perlstein, Dana Pe'er posted to data_integration by ashishanand on 2009-10-15 15:37:37 as along with 4 people dswan phoenixzxl ptrobajo frohike
	Detailing regulatory networks through large scale data integration [My Copy] Bioinformatics (13 October 2009), btp588. by Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, et al.Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller posted to motif module e-coli data_integration biclustering bayesian_integration by frohike on 2009-10-14 11:08:07 as along with 4 people aaron_webber zufar ptrobajo rdiaz
	Gene functional classification from heterogeneous data [My Copy] In RECOMB '01: Proceedings of the fifth annual international conference on Computational biology (2001), pp. 249-255. by Paul Pavlidis, Jason Weston, Jinsong Cai, William N. Grundy posted to support_vector_machine machine_learning integration_framework heterogeneous_data data_mining data_integration combining_diverse_data by installe on 2009-10-12 09:48:52 as
	Assessing the limits of genomic data integration for predicting protein networks [My Copy] Genome Research, Vol. 15, No. 7. (July 2005), pp. 945-953. by Long J. Lu, Yu Xia, Alberto Paccanaro, Haiyuan Yu, Mark Gerstein posted to protein_networks data_integration by ashishanand on 2009-10-08 19:33:13 as along with 17 people and 3 groups paccanarolab jaimie aelef okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc nedwards brianb iris_2001 carlk phoenixzxl Paccanaro Lab kdl Bioinformatics
	Prediction of clinical behaviour and treatment for cancers. [My Copy] Applied bioinformatics, Vol. 2, No. 3 Suppl. (2003) by Matthias E. Futschik, Mike Sullivan, Anthony Reeve, Nikola Kasabov posted to prognosis data_integration by srp33 on 2009-10-06 22:22:52 as
	Data fusion [My Copy] ACM Comput. Surv., Vol. 41, No. 1. (2008), pp. 1-41. by Jens Bleiholder, Felix Naumann posted to survey data_quality data_merging data_integration data_consolidation data_conflicts data_cleansing by baaic on 2009-10-06 22:09:50 as along with 3 people vsavenkov pavelkrbalek cybrpunk
	A general framework for query answering in data quality-based Cooperative Information Systems [My Copy] In IQIS '04: Proceedings of the 2004 international workshop on Information quality in information systems (2004), pp. 44-50. posted to data_quality data_integration by vsavenkov on 2009-10-02 12:18:33 as
	What’s New? What’s Certain? – Scoring Search Results in the Presence of Overlapping Data Sources [My Copy] Data Integration in the Life Sciences (2007), pp. 231-246. by Philipp Hussels, Silke Trißl, Ulf Leser posted to timeliness quality_measurement data_quality data_integration by vsavenkov on 2009-10-02 12:09:36 as
	Integration of Biological Data and Quality-Driven Source Negotiation [My Copy] Conceptual Modeling — ER 2001 (2001), pp. 256-269. by Laure Berti-Equille posted to data_quality data_integration cases biology by vsavenkov on 2009-10-02 11:48:37 as
	An Effective Combination of Multiple Classifiers for Toxicity Prediction [My Copy] Fuzzy Systems and Knowledge Discovery (2006), pp. 481-490. by Gongde Guo, Daniel Neagu, Xuming Huang, Yaxin Bi posted to data_integration by jxl on 2009-09-30 11:16:03 as
	Integrating Proteomic, Transcriptional, and Interactome Data Reveals Hidden Components of Signaling and Regulatory Networks [My Copy] Sci. Signal., Vol. 2, No. 81. (28 July 2009), ra40. by Shao-shan C. Huang, Ernest Fraenkel posted to signaling_nw protein_nw data_integration by roys on 2009-09-29 03:10:27 as along with 2 people brianb sjcockell
	Simultaneous inference of biological networks of multiple species from genome-wide data and evolutionary information: a semi-supervised approach [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 2962-2968. by Hisashi Kashima, Yoshihiro Yamanishi, Tsuyoshi Kato, Masashi Sugiyama, Koji Tsuda posted to network_inference data_integration by phoenixzxl on 2009-09-25 15:59:34 as along with 2 people roys druvus
	A community approach to data integration: Authorship and building meaningful links across diverse archaeological data sets [My Copy] Geosphere, Vol. 1, No. 2. (1 October 2005), pp. 97-109. by Eric Kansa posted to xml markup data_integration archaeology by AlisonBabeu on 2009-09-24 15:08:47 as along with 1 person cbinding
	Integration of complex archeology digital libraries: An ETANA-DL experience [My Copy] Information Systems, Vol. 33, No. 7-8. (November 2008), pp. 699-723. by R. Shen, N. Vemuri, W. Fan, E. Fox posted to digital_libraries data_integration archaeology by AlisonBabeu on 2009-09-24 15:02:54 as along with 1 person leidig07
	Performance-Oriented Privacy-Preserving Data Integration [My Copy] Data Integration in the Life Sciences (2005), pp. 240-256. by Raymond K. Pon, Terence Critchlow posted to privacy_data data_integration by bresiva on 2009-09-23 12:10:33 as
	Privacy-preserving data integration and sharing [My Copy] In DMKD '04: Proceedings of the 9th ACM SIGMOD workshop on Research issues in data mining and knowledge discovery (2004), pp. 19-26. by Chris Clifton, Murat Kantarcioǧlu, AnHai Doan, et al.Gunther Schadow, Jaideep Vaidya, Ahmed Elmagarmid, Dan Suciu posted to privacy_data data_integration by bresiva on 2009-09-21 12:04:22 as along with 1 person tbachteler
	Global networks of functional coupling in eukaryotes from comprehensive data integration [My Copy] Genome Research, Vol. 19, No. 6. (25 June 2009), pp. 1107-1116. by Andrey Alexeyenko, Erik L. L. Sonnhammer posted to data_integration bayesian by phoenixzxl on 2009-09-21 07:44:11 as along with 7 people and 1 group ptrobajo kshameer rdiaz guhjy provero roys grahamc ParkinsonLab_at_MaRS
	Bioinformatics construction of the human cell surfaceome. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 106, No. 39. (29 September 2009), pp. 16752-16757. by J. P. da Cunha, P. A. Galante, J. E. de Souza, et al.R. F. de Souza, P. M. Carvalho, D. T. Ohara, R. P. Moura, S. M. Oba-Shinja, S. K. Marie, W. A. Silva, R. O. Perez, B. Stransky, M. Pieprzyk, J. Moore, O. Caballero, J. Gama-Rodrigues, A. Habr-Gama, W. P. Kuo, A. J. Simpson, A. A. Camargo, Lloyd J. Old, S. J. de Souza posted to insight data_integration by phoenixzxl on 2009-09-16 02:56:39 as along with 3 people frohike tonamswish renatomilani
	A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353. by Olga G. Troyanskaya, Kara Dolinski, Art B. Owen, Russ B. Altman, David Botstein posted to prediction_function data_integration bayesian by phoenixzxl on 2009-09-15 04:17:37 as along with 21 people and 2 groups ruichu bertelsen bresiva BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx nedwards Evangelia kallberg isimpson carlk srp33 frohike kdl Bioinformatics
	Integrating scientific data for drug discovery and development using the Life Sciences Grid [My Copy] Expert Opinion on Drug Discovery, Vol. 4, No. 6. (June 2009), pp. 687-699. by Ernst R. Dow, James B. Hughes, Susie M. Stephens, Vaibhav A. Narayan, Richard W. Bishop posted to semantics life_science drug_discovery drug_development drug_design data_integration by joergkurtwegner to the group Drug-Design on 2009-09-03 19:05:55 as along with 3 people pekrau dullhunk nicklynch
	An integrated system for publishing environmental observations data [My Copy] Environmental Modelling & Software, Vol. 24, No. 8. (August 2009), pp. 879-888. by Jeffery S. Horsburgh, David G. Tarboton, Michael Piasecki, et al.David R. Maidment, Ilya Zaslavsky, David Valentine, Thomas Whitenack posted to web_services water_quality rivers odm informatics hydrology data_model data_management data_integration cyberinfrastructure cuahsi by emayorga on 2009-08-30 22:17:11 as along with 1 person pipitone
	Value of Adding Single-Nucleotide Polymorphism Genotypes to a Breast Cancer Risk Model [My Copy] J. Natl. Cancer Inst., Vol. 101, No. 13. (1 July 2009), pp. 959-963. by Mitchell H. Gail posted to breast-cancer data_integration risk screening snp by frohike on 2009-08-06 09:21:04 as along with 1 person and 2 groups misonneh MGEL Reading Breast Cancer Reading Club
	Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt [My Copy] Nature Protocols, Vol. 4, No. 8. (23 July 2009), pp. 1184-1191. by Steffen Durinck, Paul T. Spellman, Ewan Birney, Wolfgang Huber posted to data_integration id_translation idtranslation by frohike on 2009-07-28 14:29:36 as along with 5 people daforerog srp33 ericrpaquet cassj natstreet
	DISTILLER: a data integration framework to reveal condition dependency of complex regulons in Escherichia coli [My Copy] Genome Biology, Vol. 10, No. 3. (06 March 2009), R27. by Karen Lemmens, Tijl De Bie, Thomas Dhollander, et al.Sigrid De Keersmaecker, Inge Thijs, Geert Schoofs, Ami De Weerdt, Bart De Moor, Jos Vanderleyden, Julio C. Vides, Kristof Engelen, Kathleen Marchal posted to data_integration distiller regulatory_network tool by frohike on 2009-07-28 09:54:01 as along with 5 people druvus natstreet tvdbulck biomcgary dolchan
	Discovery and development of biomarkers of neurological disease. [My Copy] Drug discovery today, Vol. 10, No. 5. (1 March 2005), pp. 326-334. by T. Dunckley, K. D. Coon, D. A. Stephan posted to alzheimer brain data_integration integration omics by frohike on 2009-07-08 11:54:54 as
	DASMIweb: online integration, analysis and assessment of distributed protein interaction data [My Copy] Nucl. Acids Res., Vol. 37, No. suppl_2. (1 July 2009), pp. W122-128. by Hagen Blankenburg, Fidel Ramirez, Joachim Buch, Mario Albrecht posted to data_integration database interactions protein-protein tools by grahamc on 2009-06-16 19:50:25 as along with 3 people yaredo anf guhjy
	PPISearch: a web server for searching homologous protein-protein interactions across multiple species. [My Copy] Nucleic acids research, Vol. 37, No. Web Server issue. (1 July 2009), pp. W369-375. by C. C. Chen, C. Y. Lin, Y. S. Lo, J. M. Yang posted to bioinformatics data_integration interactions protein-protein tools by grahamc to the group ParkinsonLab_at_MaRS on 2009-06-10 16:32:36 as along with 3 people yaredo daforerog guhjy
	Novel integrative genomics strategies to identify genes for complex traits. [My Copy] Anim Genet, Vol. 37 Suppl 1 (August 2006), pp. 18-23. by E. E. Schadt posted to causality data_integration diseases eqtl by roys on 2009-05-25 03:44:03 as along with 2 people manduca fisherp
	Integrating genetic and gene expression data: application to cardiovascular and metabolic traits in mice. [My Copy] Mammalian genome : official journal of the International Mammalian Genome Society, Vol. 17, No. 6. (June 2006), pp. 466-479. by Thomas A. Drake, Eric E. Schadt, Aldons J. Lusis posted to bayesian_networks data_integration eqtl by roys on 2009-05-20 00:48:35 as along with 4 people guhjy koller jo_davies srp33
	Integrating siRNA and protein-protein interaction data to identify an expanded insulin signaling network. [My Copy] Genome research, Vol. 19, No. 6. (4 June 2009), pp. 1057-1067. by Zhidong Tu, Carmen Argmann, Kenny K. Wong, et al.Lyndon J. Mitnaul, Stephen Edwards, Iliana C. Sach, Jun Zhu, Eric E. Schadt posted to data_integration diseases eqtl by roys on 2009-05-19 23:06:07 as along with 4 people ptrobajo megraw kshameer brianb
	Comparative analysis of multiple genome-scale data sets. [My Copy] Genome Res, Vol. 12, No. 10. (October 2002), pp. 1564-1573. by M. Werner-Washburne, B. Wylie, K. Boyack, et al.E. Fuge, J. Galbraith, J. Weber, G. Davidson posted to data_integration gene_expression_nw protein_nw by roys on 2009-05-19 17:51:04 as along with 2 people balajis opheliav
	New regulators of Wnt/beta-catenin signaling revealed by integrative molecular screening. [My Copy] Science signaling, Vol. 1, No. 45. (2008) by M. B. Major, B. S. Roberts, J. D. Berndt, et al.S. Marine, J. Anastas, N. Chung, M. Ferrer, X. Yi, C. L. Stoick-Cooper, P. D. von Haller, L. Kategaya, A. Chien, S. Angers, M. MacCoss, M. A. Cleary, W. T. Arthur, R. T. Moon posted to data_integration genetic_nw signaling_nw by roys on 2009-05-17 20:45:24 as along with 2 people jaimie nedwards
	DASMI: exchanging, annotating and assessing molecular interaction data [My Copy] Bioinformatics, Vol. 25, No. 10. (15 May 2009), pp. 1321-1328. by Hagen Blankenburg, Robert D. Finn, Andreas Prlic, et al.Andrew M. Jenkinson, Fidel Ramirez, Dorothea Emig, Sven-Eric Schelhorn, Joachim Buch, Thomas Lengauer, Mario Albrecht posted to bioinformatics data_integration database interactions tools by grahamc on 2009-05-14 02:47:14 as along with 3 people kshameer guhjy beapen
	Candidate glioblastoma development gene identification using concordance between copy number abnormalities and gene expression level changes. [My Copy] Genes Chromosomes Cancer, Vol. 46, No. 10. (October 2007), pp. 875-894. by K. C. Lo, M. R. Rossi, J. LaDuca, et al.D. G. Hicks, Y. Turpaz, L. Hawthorn, J. K. Cowell posted to brain_cancer data_integration by srp33 on 2009-05-04 21:43:51 as
	Integrated array-comparative genomic hybridization and expression array profiles identify clinically relevant molecular subtypes of glioblastoma. [My Copy] Cancer research, Vol. 65, No. 5. (1 March 2005), pp. 1678-1686. by Janice M. Nigro, Anjan Misra, Li Zhang, et al.Ivan Smirnov, Howard Colman, Chandi Griffin, Natalie Ozburn, Mingang Chen, Edward Pan, Dimpy Koul, Alfred K. Yung, Burt G. Feuerstein, Kenneth D. Aldape posted to brain_cancer data_integration prognosis by srp33 on 2009-04-27 17:28:04 as along with 4 people aezrin chrisamiller jfr bioguru2000
	Data integration - connecting the dots [My Copy] Nat Biotech, Vol. 21, No. 8. (August 2003), pp. 844-845. by David B. Searls posted to data_integration by jxl on 2009-04-27 11:40:01 as
	Discovery of biological networks from diverse functional genomic data. [My Copy] Genome Biol, Vol. 6, No. 13. (2005) by C. L. Myers, D. Robson, A. Wible, et al.M. A. Hibbs, C. Chiriac, C. L. Theesfeld, K. Dolinski, O. G. Troyanskaya posted to bayesian_networks biological_networks data_integration functional_networks yeast by roys on 2009-04-23 05:02:15 as along with 5 people dragonrez cswinburne grahamc carlk AbnerCYH
	A genomewide functional network for the laboratory mouse. [My Copy] PLoS computational biology, Vol. 4, No. 9. (2008), e1000165. by Y. Guan, C. L. Myers, R. Lu, I. R. Lemischka, C. J. Bult, O. G. Troyanskaya posted to bayesian_networks biological_networks data_integration functional_networks gene_expression_nw mouse by roys on 2009-04-23 04:59:14 as along with 9 people dansullivanblk biomcgary cswinburne zwang pengchy ptrobajo guhjy grahamc tmmurali
	Toward accurate reconstruction of functional protein networks. [My Copy] Molecular systems biology, Vol. 5 (17 March 2009) by Nir Yosef, Lior Ungar, Einat Zalckvar, et al.Adi Kimchi, Martin Kupiec, Eytan Ruppin, Roded Sharan posted to causality data_integration flow_networks protein_nw subnw by roys on 2009-04-20 03:07:44 as along with 6 people jfr poirel zwang renatomilani phoenixzxl biomcgary
	Identifying functional modules using expression profiles and confidence-scored protein interactions [My Copy] Bioinformatics, Vol. 25, No. 9. (1 May 2009), pp. 1158-1164. by Igor Ulitsky, Ron Shamir posted to data_integration gene_expression by phoenixzxl on 2009-04-17 02:23:20 as along with 4 people jfr yaredo saket tmmurali
	A geo-temporal Web gazetteer integrating data from multiple sources [My Copy] Digital Information Management, 2008. ICDIM 2008. Third International Conference on In Digital Information Management, 2008. ICDIM 2008. Third International Conference on (2008), pp. 146-153. by H. Manguinhas, B. Martins, J. Borbinha posted to data_integration gazetteers--digital gazetteers--time_periods geographic-information_retrieval by AlisonBabeu on 2009-04-16 15:58:28 as
	Integrated functional, gene expression and genomic analysis for the identification of cancer targets. [My Copy] PloS one, Vol. 4, No. 4. (9 April 2009), e5120. by Elizabeth Iorns, Christopher J. Lord, Anita Grigoriadis, et al.Sarah McDonald, Kerry Fenwick, Alan Mackay, Charles A. Mein, Rachael Natrajan, Kay Savage, Narinder Tamber, Jorge S. Reis-Filho, Nicholas C. Turner, Alan Ashworth posted to cancer data_integration networks by roys on 2009-04-10 06:39:35 as along with 2 people jfr rdiaz
	Rembrandt: helping personalized medicine become a reality through integrative translational research. [My Copy] Molecular cancer research : MCR, Vol. 7, No. 2. (1 February 2009), pp. 157-167. by S. Madhavan, J. C. Zenklusen, Y. Kotliarov, H. Sahni, H. A. Fine, K. Buetow posted to brain_cancer cancer_genome_atlas data_integration by srp33 on 2009-03-23 20:47:27 as along with 1 person frohike

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proj_assembly	31
structure	31
complexes	23
algorithm	22
database	22
review	19
binding	15
embl	15
interactions	15
networks	14
annotation	13
modelling	13
service	13
ppi	11
protein-protein	10
data_quality	9
web_service	9
alignment	8
classic	8
tools	8
evolution	7
network_biology	7
bioinformatics	6
biological_networks	6
gene_expression	6
microarray	6
proj_interprets	6
systems_biology	6
toolkit	6
bayesian	5
brain_cancer	5
complex	5
download	5
network_ppi	5
bayesian_networks	4
biology	4
data_mining	4
human	4
integration	4
machine_learning	4
non-redundant	4
archaeology	3
breast-cancer	3
classification	3
data	3
eqtl	3
function_prediction	3
informatics	3
microarray_data_analysis	3
peruse	3
prediction_function	3
prognosis	3
protein_nw	3
reverse_engineering	3
semantic_web	3
signaling_nw	3
statistics	3
svm	3
actex	2
arraycgh	2
bayesian_inference	2
biclustering	2
cancer	2
cases	2
combining_metrics	2
cuahsi	2
databases	2
disease	2
disorder	2
drug_discovery	2
ensemble	2
feature_selection	2
functional_networks	2
gene_expression_mining	2
general	2
genomic_data	2
has_metrics	2
insight	2
interoperability	2
life_science	2
metadata	2
model_organisms	2
mouse	2
prediction_ppi	2
privacy_data	2
proj_disocons	2
proj_stabperf	2
quality_measurement	2
regulatory_network	2
schema	2
semantic-interoperability	2
sigmod	2
snp	2
somatic_mutations	2
statistical_power	2
systems	2
timeliness	2
validation	2
web_services	2
yeast	2

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