Tag deep-sequencing [25 articles] Export

Recent papers classified by the tag deep-sequencing.

	Bioinformatics challenges of new sequencing technology [My Copy] Trends in Genetics, Vol. 24, No. 3. (11 February 2008), pp. 142-149. by M. Pop, S. Salzberg posted to review deep-sequencing bioinformatics by ptrobajo on 2009-09-17 15:46:38 as along with 33 people hpaces heliopais imaginatio operon daforerog n00c orzenil APRegier katholt michaelbarton kiekyon thegoose2 xingxu floatingpoint polivares yupu treangen jmcq delenickphd giovenko jmeppley dchughes djkt GustavoLacerda niallhaslam urgi Neeperando jfr tharris mariakmejia caseybrown yoonk druvus
	Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data [My Copy] Genome Biology, Vol. 10, No. 7. (22 July 2009), R79. by Piotr Balwierz, Piero Carninci, Carsten Daub, et al.Jun Kawai, Yoshihide Hayashizaki, Werner Van Belle, Christian Beisel, Erik van Nimwegen posted to normalization noise methodology herman expression deep-sequencing cage by ptrobajo on 2009-09-06 21:03:10 as along with 7 people vingron orzenil maximilianh inesdesantiago djkt guhjy dolchan
	Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea. [My Copy] RNA (New York, N.Y.) (24 June 2009) by Yi-Chien C. Lu, Magda Smielewska, Dasaradhi Palakodeti, et al.Michael T. Lovci, Stefan Aigner, Gene W. Yeo, Brenton R. Graveley posted to deep-sequencing mirna planaria by erel10 on 2009-06-30 15:32:00 as along with 1 person samgj
	Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications [My Copy] Bioinformatics, Vol. 24, No. 23. (1 December 2008), pp. 2776-2777. by Brian D. Ondov, Anjana Varadarajan, Karla D. Passalacqua, Nicholas H. Bergman posted to bioinformatics deep-sequencing socs by felsani on 2009-02-17 18:28:02 as along with 16 people bozdagd fishtank burak ThomasDOtto n00c mmartin natstreet adijr druvus xingxu azazello orzenil dswan pengchy cthachuk nuin
	Inferring causal relationships among different histone modifications and gene expression [My Copy] Genome Research, Vol. 18, No. 8. (18 August 2008), pp. 1314-1324. by Hong Yu, Shanshan Zhu, Bing Zhou, Huiling Xue, Jing-Dong J. Han posted to chip-seq deep-sequencing gene_expression histone_modification transcriptional_regulation by felsani on 2009-02-17 18:14:09 as along with 10 people daveGerrard mingzhi suizifish fpattyn rschulz ptrobajo bootsy bcondon sharmapank klo
	Stem cell transcriptome profiling via massive-scale mRNA sequencing [My Copy] Nature Methods, Vol. 5, No. 7. (30 May 2008), pp. 613-619. by Nicole Cloonan, Alistair R. R. Forrest, Gabriel Kolle, et al.Brooke B. A. Gardiner, Geoffrey J. Faulkner, Mellissa K. Brown, Darrin F. Taylor, Anita L. Steptoe, Shivangi Wani, Graeme Bethel, Alan J. Robertson, Andrew C. Perkins, Stephen J. Bruce, Clarence C. Lee, Swati S. Ranade, Heather E. Peckham, Jonathan M. Manning, Kevin J. McKernan, Sean M. Grimmond posted to deep-sequencing new-technology rna-seq stem_cells transcriptome by felsani on 2009-02-17 18:09:14 as along with 20 people jwfoley heliopais jmanning2k stubrown cassj n00c burak natstreet poschm jbhiatt vplagnol rschulz umit myourshaw megraw inesdesantiago GeeSharpMinor caseybrown guhjy gdb
	Genome-wide in situ exon capture for selective resequencing [My Copy] Nat Genet, Vol. 39, No. 12. (04 November 2007), pp. 1522-1527. by Emily Hodges, Zhenyu Xuan, Vivekanand Balija, et al.Melissa Kramer, Michael N. Molla, Steven W. Smith, Christina M. Middle, Matthew J. Rodesch, Thomas J. Albert, Gregory J. Hannon, W. Richard McCombie posted to deep-sequencing microarray new-technology protocol by felsani on 2009-02-08 16:05:32 as along with 7 people jmanning2k dpsuslo8 vmsr kintoki giovanni jo_davies guhjy
	Repeatability of published microarray gene expression analyses [My Copy] Nature Genetics, Vol. 41, No. 2. (28 January 2008), pp. 149-155. by John P. A. Ioannidis, David B. Allison, Catherine A. Ball, et al.Issa Coulibaly, Xiangqin Cui, Aedin C. Culhane, Mario Falchi, Cesare Furlanello, Laurence Game, Giuseppe Jurman, Jon Mangion, Tapan Mehta, Michael Nitzberg, Grier P. Page, Enrico Petretto, Vera van Noort posted to deep-sequencing microarray new-technology by felsani on 2009-02-08 15:39:05 as along with 20 people and 1 group heliopais ericrpaquet guhjy greg frohike TRHvidsten giovenko jfr rdiaz zufar ptrobajo floatingpoint nuin daforerog cabbagesofdoom dswan Zephyrus inesdesantiago djkt paszkows Roswell Cancer Crosstalk
	Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms [My Copy] Nucl. Acids Res., Vol. 36, No. 21. (1 December 2008), e141. by Peter A. C. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, et al.Erno Vreugdenhil, Rolf H. A. M. Vossen, Renee X. de Menezes, Judith M. Boer, Gert-Jan B. van Ommen, Johan T. den Dunnen posted to deep-sequencing microarray new-technology transcriptome by felsani on 2009-02-08 11:18:25 as along with 23 people GustavoLacerda stubrown GeeSharpMinor n00c guhjy hcoller daed poschm stsaft azazello jfr slevy03 usagi-kirin shikin coela cthachuk ojabado caseybrown abizar natstreet druvus rschulz pengchy
	Alternative isoform regulation in human tissue transcriptomes [My Copy] Nature, Vol. 456, No. 7221. (02 November 2008), pp. 470-476. by Eric T. Wang, Rickard Sandberg, Shujun Luo, et al.Irina Khrebtukova, Lu Zhang, Christine Mayr, Stephen F. Kingsmore, Gary P. Schroth, Christopher B. Burge posted to deep-sequencing new-technology transcriptional_regulation transcriptome by felsani on 2009-02-08 11:10:35 as along with 21 people and 1 group ajbattle stubrown jonilaserson tonamswish frohike fenghezi heliopais zxmon21 tanglingfung xingxu wimufi Zephyrus gjuggler bertelsen eluinka gfliustu vplagnol kieran101 emptyhb rschulz abizar Roswell Cancer Crosstalk
	Subclonal phylogenetic structures in cancer revealed by ultra-deep sequencing [My Copy] Proceedings of the National Academy of Sciences, Vol. 105, No. 35. (2 September 2008), pp. 13081-13086. by Peter J. Campbell, Erin D. Pleasance, Philip J. Stephens, et al.Ed Dicks, Richard Rance, Ian Goodhead, George A. Follows, Anthony R. Green, P. Andy Futreal, Michael R. Stratton posted to cancer deep-sequencing new-technology by felsani on 2009-02-08 11:01:40 as along with 3 people heliopais frohike gjuggler
	Advanced sequencing technologies and their wider impact in microbiology [My Copy] J Exp Biol, Vol. 210, No. 9. (1 May 2007), pp. 1518-1525. by Neil Hall posted to deep-sequencing microbiology review by felsani on 2009-02-08 10:57:05 as along with 5 people Pascalichouchou xingxu rschulz kmdaily bozdagd
	Discovery of Plant MicroRNAs and Short-Interfering RNAs by Deep Parallel Sequencing. [My Copy] Methods in molecular biology (Clifton, N.J.), Vol. 495 (2009), pp. 1-12. by P. Chellappan, H. Jin posted to deep-sequencing microrna by pengchy on 2009-01-12 05:08:51 as along with 3 people abizar natstreet druvus
	Studying alternative splicing regulatory networks through partial correlation analysis [My Copy] Genome Biology, Vol. 10, No. 1. (2009), R3. by Liang Chen, Sika Zheng posted to alternative-splicing deep-sequencing network transcriptome by pengchy on 2009-01-11 01:19:04 as along with 3 people cajunsushi lptolik daforerog
	SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses [My Copy] Bioinformatics (6 January 2009), btp011. by Michael S. Barker, Katrina M. Dlugosch, Reddy, Sarah N. Amyotte, Loren H. Rieseberg posted to deep-sequencing software by felsani on 2009-01-10 01:45:24 as along with 5 people semrich jmeppley druvus jasontsai djkt
	RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays [My Copy] Genome Research, Vol. 18, No. 9. (11 September 2008), pp. 1509-1517. by John C. Marioni, Christopher E. Mason, Shrikant M. Mane, Matthew Stephens, Yoav Gilad posted to deep-sequencing illumina rna-seq by felsani on 2009-01-10 01:39:13 as along with 44 people and 2 groups jwfoley heliopais debasis maren mtagaya mkiyer stubrown woodson8 jonilaserson burak Ayest ThomasDOtto huali n00c natstreet bandrewfox daed dandaman slevy03 pengchy coela shikin fhalbrit inesdesantiago jmcq lp2 caseybrown jfr dakelley Ema balicea vega lusk semrich vmarshal fpattyn stajich giovanni ela503 Stew guhjy kengg shurjo GustavoLacerda SIMR bioinformatics Mycology
	Real-Time DNA Sequencing from Single Polymerase Molecules [My Copy] Science, Vol. 323, No. 5910. (2 January 2009), pp. 133-138. by John Eid, Adrian Fehr, Jeremy Gray, et al.Khai Luong, John Lyle, Geoff Otto, Paul Peluso, David Rank, Primo Baybayan, Brad Bettman, Arkadiusz Bibillo, Keith Bjornson, Bidhan Chaudhuri, Frederick Christians, Ronald Cicero, Sonya Clark, Ravindra Dalal, Alex deWinter, John Dixon, Mathieu Foquet, Alfred Gaertner, Paul Hardenbol, Cheryl Heiner, Kevin Hester, David Holden, Gregory Kearns, Xiangxu Kong, Ronald Kuse, Yves Lacroix, Steven Lin, Paul Lundquist, Congcong Ma, Patrick Marks, Mark Maxham, Devon Murphy, Insil Park, Thang Pham, Michael Phillips, Joy Roy, Robert Sebra, Gene Shen, Jon Sorenson, Austin Tomaney, Kevin Travers, Mark Trulson, John Vieceli, Jeffrey Wegener, Dawn Wu, Alicia Yang, Denis Zaccarin, Peter Zhao, Frank Zhong, Jonas Korlach, Stephen Turner posted to deep-sequencing new-technology by felsani on 2009-01-08 23:32:22 as along with 37 people and 3 groups operon n00c kinestetika mtagaya jlgreen dna idoerg absterga lukzky ImranRaoufMalik Archaeogenetics inesdesantiago 7ac5 wimufi cactus jasontsai mlangill melting polivares pkonings natstreet fhalbrit druvus samjlord Stew ghattem nedwards myzhang pengchy jbhiatt GeeSharpMinor GustavoLacerda azazello sconlan alexknight emptyhb caseybrown iSEEM moernerlab Bioinformatics - CRUK
	High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families [My Copy] BMC Genomics, Vol. 9, No. 1. (2008) by Gyorgy Szittya, Simon Moxon, Dulce Santos, et al.Runchun Jing, Manuel Fevereiro, Vincent Moulton, Tamas Dalmay posted to deep-sequencing microrna by pengchy on 2008-12-21 02:02:10 as along with 3 people samgj abizar druvus
	Metagenome Annotation Using a Distributed Grid of Undergraduate Students [My Copy] PLoS Biol, Vol. 6, No. 11. (25 November 2008), e296. by Pascal Hingamp, Céline Brochier, Emmanuel Talla, Daniel Gautheret, Denis Thieffry, Carl Herrmann posted to annotation deep-sequencing education genome by ptrobajo on 2008-11-25 20:12:26 as along with 17 people and 3 groups daforerog operon azazello Stew JustinCrocker nuin jmeppley xingxu guhjy nitiniitk dbikard dchughes druvus neils djkt dullhunk treangen Bioinformatics - CRUK Centre de Recherches Interdisciplinaires iSEEM
	CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets [My Copy] Bioinformatics, Vol. 25, No. 1. (1 January 2009), pp. 130-131. by Charles Addo-Quaye, Webb Miller, Michael J. Axtell posted to deep-sequencing microrna plant software by pengchy on 2008-11-23 01:38:51 as along with 4 people guhjy natstreet druvus rschulz
	A toolkit for analysing large-scale plant small RNA datasets. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 19. (1 October 2008), pp. 2252-2253. by Simon Moxon, Frank Schwach, Tamas Dalmay, Dan Maclean, David J. Studholme, Vincent Moulton posted to deep-sequencing plant small_rna software by pengchy on 2008-11-23 01:20:32 as along with 3 people and 1 group heliopais natstreet druvus microRNA
	Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches [My Copy] BMC Genomics, Vol. 9 (15 November 2008), 542. by Foo, Robin C. Buell posted to deep-sequencing by pengchy on 2008-11-21 00:53:24 as along with 1 person semrich
	High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi [My Copy] Nature Genetics, Vol. 40, No. 8. (27 July 2008), pp. 987-993. by Kathryn E. Holt, Julian Parkhill, Camila J. Mazzoni, et al.Philippe Roumagnac, François-Xavier Weill, Ian Goodhead, Richard Rance, Stephen Baker, Duncan J. Maskell, John Wain, Christiane Dolecek, Mark Achtman, Gordon Dougan posted to deep-sequencing example by pengchy on 2008-10-20 12:19:41 as along with 10 people azazello felsani usagi-kirin lewista treangen abizar druvus caseybrown Stew aconesa
	Probabilistic base calling of Solexa sequencing data. [My Copy] BMC bioinformatics, Vol. 9, No. 1. (2008), 431. by Jacques Rougemont, Arnaud Amzallag, Christian Iseli, Laurent Farinelli, Ioannis Xenarios, Felix Naef posted to deep-sequencing image solexa by pengchy on 2008-10-20 03:13:51 as along with 16 people and 1 group heliopais orzenil n00c dakelley jfr usagi-kirin magusina malcook natstreet druvus iris42 abizar caseybrown reyez waszak nuin SIMR bioinformatics
	Identification of novel and candidate miRNAs in rice by high throughput sequencing [My Copy] BMC Plant Biology, Vol. 8 (29 February 2008), 25. by Ramanjulu Sunkar, Xuefeng Zhou, Yun Zheng, Weixiong Zhang, Jian-Kang Zhu posted to deep-sequencing microrna by pengchy on 2008-10-19 11:05:49 as along with 2 people orzenil natstreet

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new-technology	7
microarray	4
microrna	4
software	4
transcriptome	4
bioinformatics	2
expression	2
network	2
plant	2
review	2
rna-seq	2
transcriptional_regulation	2
alternative-splicing	1
annotation	1
bayesian	1
cage	1
cancer	1
chip-seq	1
comparative_analysis	1
education	1
evaluate	1
example	1
gene	1
gene_expression	1
genome	1
herman	1
histone	1
histone_modification	1
illumina	1
image	1
map	1
methodology	1
microbiology	1
mirna	1
modifications	1
noise	1
normalization	1
planaria	1
protocol	1
small_rna	1
socs	1
solexa	1
stem_cells	1

Tag deep-sequencing [25 articles] Export

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