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Tag defrost [109 articles]

 
Recent papers classified by the tag defrost.
 

Citation Tools in Academic Libraries

  [CiTO]
Reference & User Services Quarterly, Vol. 51, No. 2. (1 December 2011), pp. 143-152, doi:10.5860/rusq.51n2.143
posted to defrost informatics by dullhunk to the group Journal picks on 2013-05-23 10:50:22 ** along with 1 person BenTreat

Abstract

In recent years libraries have seen an increase in the number and complexity of citation management programs like Zotero, RefWorks and Endnote, and with this an expanded role for libraries in support of citation and research management. But how should libraries best support citation management and the needs of users and how do the tools fit into information literacy programs? Penn State University librarians decided to take stock of the various tools and programs available for citation management and outline how ...

 

Zotero: A bibliographic assistant to researcher

  [CiTO]
Journal of Pharmacology and Pharmacotherapeutics, Vol. 2, No. 4. (2011), 303, doi:10.4103/0976-500x.85940
posted to cites-defrost defrost zotero by dullhunk to the group Journal picks on 2013-04-16 18:55:17 **
 

Negated bio-events: analysis and identification.

  [CiTO]
BMC bioinformatics, Vol. 14, No. 1. (2013), 14, doi:10.1186/1471-2105-14-14

Abstract

Negation occurs frequently in scientific literature, especially in biomedical literature. It has previously been reported that around 13% of sentences found in biomedical research articles contain negation. Historically, the main motivation for identifying negated events has been to ensure their exclusion from lists of extracted interactions. However, recently, there has been a growing interest in negative results, which has resulted in negation detection being identified ...

 

Interactive text mining with Pipeline Pilot: a bibliographic web-based tool for PubMed.

  [CiTO]
Infectious disorders drug targets, Vol. 9, No. 3. (June 2009), pp. 366-374

Abstract

Text mining has become an integral part of all research in the medical field. Many text analysis software platforms support particular use cases and only those. We show an example of a bibliographic tool that can be used to support virtually any use case in an agile manner. Here we focus on a Pipeline Pilot web-based application that interactively analyzes and reports on PubMed search ...

 

Theoretical and technological building blocks for an innovation accelerator

  [CiTO]
In The European Physical Journal Special Topics, Vol. 214, No. 1. (2012), pp. 183-214, doi:10.1140/epjst/e2012-01692-1

Abstract

Abstract Modern science is a main driver of technological innovation. The efficiency of the scientific system is of key importance to ensure the competitiveness of a nation or region. However, the scientific system that we use today was ...

 

Using ARROWSMITH: a computer-assisted approach to formulating and assessing scientific hypotheses

  [CiTO]
Computer Methods and Programs in Biomedicine, Vol. 57, No. 3. (November 1998), pp. 149-153, doi:10.1016/s0169-2607(98)00033-9

Abstract

Conventional computer searches of the biomedical literature (e.g. MEDLINE) allow investigators to retrieve much of the information that has already been published on a given topic. However, these searches are of limited utility at the frontier of scientific discovery, when one wishes to identify and assess new, untested scientific hypotheses, or to uncover biologically significant relations between two previously disparate fields of inquiry. We have designed a set of interactive software and database search strategies, collectively called ARROWSMITH, that facilitate the ...

 

Architecture for a Collaborative Research Environment Based on Reading List Sharing

  [CiTO]
In Research and Advanced Technology for Digital Libraries, Vol. 6273 (2010), pp. 294-306, doi:10.1007/978-3-642-15464-5_30
posted to andreas-rauber antonis-lempesis citeulike defrost fabrizio-sebastiani gabriella-kazai ingo-frommholz joemon-jose katerina-iatropoulou marko-mikulicic mendeley mounia-lalmas natalia-manola natasa-milic-frayling paolo-manghi tim-haughton by hazman  on 2012-12-07 09:07:52 ** along with 4 people and 1 group cjhunter dullhunk jhyin Scis0000002 tjlib

Abstract

Scholarly research involves a systematic study of information sources in order to establish facts and reach new conclusions. It encompasses survey, analysis, evaluation, and creation as distinct phases that are performed iteratively and often in parallel by accessing a range of local and remote resources. Throughout these activities scholars create collections of relevant work, ranging from publication references to new information acquired through experiments or correspondence with other scholars. We use the term reading list to refer to such collections. Existing ...

 

The persistence of error: a study of retracted articles on the Internet and in personal libraries.

  [CiTO]
Journal of the Medical Library Association : JMLA, Vol. 100, No. 3. (July 2012), pp. 184-189, doi:10.3163/1536-5050.100.3.008

Abstract

To determine the accessibility of retracted articles residing on non-publisher websites and in personal libraries. Searches were performed to locate Internet copies of 1,779 retracted articles identified in MEDLINE, published between 1973 and 2010, excluding the publishers' website. Found copies were classified by article version and location. Mendeley (a bibliographic ...

 

Semantic Query Answering in Digital Libraries Artificial Intelligence: Theories and Applications

  [CiTO]
Vol. 7297 (2012), pp. 17-24, doi:10.1007/978-3-642-30448-4_3
posted to defrost by dullhunk to the group Journal picks on 2012-08-10 10:21:18 **

Abstract

A large activity for digitization, access and preservation of cultural heritage is taking place in Europe and the United States, which involves all types of cultural institutions, i.e., galleries, libraries, museums, archives and all types of cultural content. Semantic interoperability is a key issue in these developments. Content metadata constitute the main features of cultural items that are analysed and used to interpret users’ queries, so that the most appropriate content is presented to the users. This paper presents a new ...

 

Design for all: towards a social platform for integrating distributed open-access repositories

  [CiTO]
In Proceedings of the 4th International Conference on PErvasive Technologies Related to Assistive Environments (2011), doi:10.1145/2141622.2141628

Abstract

Recent advances in networking and telecommunications technologies combined with the vast load of readily available scientific data, urge towards the implementation of software systems that are able to collect, combine and present information from distributed repositories. At the same time, scientists, researchers, academics and experts demand flexible infrastructures that provide just-in-time information, with reliable, peer-reviewed data, through ubiquitous interfaces. Towards this direction, several international organizations including the European Commission, promote the development of software platforms that will facilitate universal access to ...

 

Building student proficiency with scientific literature using the Zotero reference manager platform.

  [CiTO]
Biochemistry and molecular biology education : a bimonthly publication of the International Union of Biochemistry and Molecular Biology, Vol. 39, No. 6. (11 November 2011), pp. 412-415, doi:10.1002/bmb.20551
posted to cites-defrost defrost zotero by dullhunk to the group Journal picks on 2011-11-28 19:45:33 **

Abstract

While mastery of the scientific literature is a strongly desirable trait for undergraduate students, the sheer volume of the current literature has complicated the challenge of teaching scientific literacy. Part of the response to this ever-increasing volume of resources includes formal instruction in the use of reference manager software while engaging students with the primary literature. This article describes the incorporation of the reference manager ...

 

Ceci n'est pas un hamburger: modelling and representing the scholarly article

  [CiTO]
Learned Publishing, Vol. 24, No. 3. (01 July 2011), pp. 207-220, doi:10.1087/20110309

Abstract

Current approaches to publishing scholarly work are falling behind the growing demands of modern readers, who need easy access to the underlying data, as well as the ability to consume content on an ever-growing variety of electronic devices. The pros and cons of the various formats for representing the scholarly article are hotly contested, but as yet these debates have had little tangible impact on the publishing world where, in spite of its apparent limitations, the PDF remains the dominant form ...

 

TogoDoc server/client system: smart recommendation and efficient management of life science literature.

  [CiTO]
PloS one, Vol. 5, No. 12. (13 December 2010), e15305, doi:10.1371/journal.pone.0015305

Abstract

In this paper, we describe a server/client literature management system specialized for the life science domain, the TogoDoc system (Togo, pronounced Toe-Go, is a romanization of a Japanese word for integration). The server and the client program cooperate closely over the Internet to provide life scientists with an effective literature recommendation service and efficient literature management. The content-based and personalized literature recommendation helps researchers to isolate interesting papers from the "tsunami" of literature, in which, on average, more than one biomedical ...

 

Rolling Out Zotero Across Campus as a Part of a Science Librarian's Outreach Efforts

  [CiTO]
Science & Technology Libraries, Vol. 29, No. 4. (2010), pp. 315-324, doi:10.1080/0194262x.2010.523309

Abstract

As more information proliferates online, researchers often struggle to find an efficient way of managing their bibliographic data. Zotero presents an attractive alternative to proprietary citation tools as it is free, user-friendly, Web 2.0-compatible, and can be easily integrated with websites, online databases, catalogs, and repositories. Besides a brief review and comparative analysis of Zotero, the article highlights the science librarian's efforts to promote Zotero to students and faculty members in the College of Natural Sciences and Mathematics. While his initial ...

 

Technology: Libraries of the future

  [CiTO]
Nature, Vol. 468, No. 7324. (2 December 2010), pp. 633-633, doi:10.1038/468633a
 

Recent progress in automatically extracting information from the pharmacogenomic literature.

  [CiTO]
Pharmacogenomics, Vol. 11, No. 10. (October 2010), pp. 1467-1489, doi:10.2217/pgs.10.136

Abstract

The biomedical literature holds our understanding of pharmacogenomics, but it is dispersed across many journals. In order to integrate our knowledge, connect important facts across publications and generate new hypotheses we must organize and encode the contents of the literature. By creating databases of structured pharmocogenomic knowledge, we can make the value of the literature much greater than the sum of the individual reports. We ...

 

Knowledge-Driven Approaches to Genome-Scale Analysis

  [CiTO]
In Knowledge-Based Bioinformatics (2010), pp. 33-65, doi:10.1002/9780470669716.ch2

Abstract

Summary 10.1002/9780470669716.ch2.abs This chapter contains sections titled: * Fundamentals * Challenges in knowledge-driven approaches * Current knowledge-based bioinformatics tools * 3R systems: reading, reasoning and reporting the way towards biomedical discovery * The Hanalyzer: a proof of 3R concept * Acknowledgements * References ...

 

Supporting the creation of scholarly bibliographies by communities through online reputation based social collaboration

  [CiTO]
In ECDL'09: Proceedings of the 13th European conference on Research and advanced technology for digital libraries (2009), pp. 180-191
 

A New Era in Citation and Bibliometric Analyses: Web of Science, Scopus, and Google Scholar

  [CiTO]
(23 Dec 2006)
posted to defrost google-scholar scopus wok by dullhunk  on 2010-10-12 19:35:17 ** along with 7 people and 1 group BOUKACEM cm1acb MariaTeresaGarciaGallardo mfenner Schopfel snsilva ulrichhouzanme Gobbledygook

Abstract

Academic institutions, federal agencies, publishers, editors, authors, and librarians increasingly rely on citation analysis for making hiring, promotion, tenure, funding, and/or reviewer and journal evaluation and selection decisions. The Institute for Scientific Information's (ISI) citation databases have been used for decades as a starting point and often as the only tools for locating citations and/or conducting citation analyses. ISI databases (or Web of Science), however, may no longer be adequate as the only or even the main sources of citations because new databases and tools that allow citation searching ...

 

L’avenir hypertextuel des Annales

  [CiTO]
Annales Pharmaceutiques Françaises, Vol. 68, No. 5. (September 2010), pp. 267-268, doi:10.1016/j.pharma.2010.08.004
posted to alain-astier cites-defrost defrost by dullhunk on 2010-09-26 18:47:54 **
 

Zotero: harnessing the power of a personal bibliographic manager.

  [CiTO]
Nurse educator, Vol. 35, No. 5. (t 2010), pp. 205-207, doi:10.1097/nne.0b013e3181ed81e4
posted to defrost zotero by dullhunk on 2010-08-24 16:46:53 **

Abstract

Zotero is a powerful free personal bibliographic manager (PBM) for writers. Use of a PBM allows the writer to focus on content, rather than the tedious details of formatting citations and references. Zotero 2.0 (http://www.zotero.org) has new features including the ability to synchronize citations with the off-site Zotero server and the ability to collaborate and share with others. An overview on how to use the software and discussion about the strengths and limitations are included. ...

 

Article 50 million: an estimate of the number of scholarly articles in existence

  [CiTO]
Learned Publishing, Vol. 23, No. 3. (July 2010), pp. 258-263, doi:10.1087/20100308

Abstract

How many scholarly research articles are there in existence? Journal articles first appeared in 1665, and the cumulative total is estimated here to have passed 50 million in 2009. This sum was arrived at based on published figures for global annual output for 2006, and analyses of annual output and growth rates published in the last decade. ...

 

Croatian Medical Journal Citation Score in Web of Science, Scopus, and Google Scholar

  [CiTO]
Croatian Medical Journal, Vol. 51, No. 2. (April 2010), pp. 99-103, doi:10.3325/cmj.2010.51.99
posted to defrost by dullhunk on 2010-07-01 11:28:08 **
 

PubMed® Search Interface Alternatives: A Descriptive Comparison

  [CiTO]
Journal of Electronic Resources in Medical Libraries, Vol. 7, No. 2. (2010), pp. 126-134, doi:10.1080/15424065.2010.482905

Abstract

The Entrez interface developed by the National Center for Biotechnology Information (NCBI) includes basic and advanced features that benefit novice and expert searchers alike. After NCBI made its content available as an application programming interface (API), external database developers started creating alternative interfaces to search Entrez databases. This article reviews the features and functionality of several of these alternatives (ClusterMed, eTBlast 3.0, HubMed, and SLIM v.2) and compares search results for two PubMed® strategies executed in each of the four comparison ...

 

Supporting the Creation of Scholarly Bibliographies by Communities through Online Reputation Based Social Collaboration

  [CiTO]
Research and Advanced Technology for Digital Libraries, Vol. 5714 (2009), pp. 180-191, doi:10.1007/978-3-642-04346-8_19
posted to defrost by dullhunk on 2010-05-26 23:51:46 ** along with 2 people alhoori AlisonBabeu

Abstract

Bibliographic digital libraries play a significant role in conducting research and, in the past few years, have started to move from closed to more open social platforms. However, in this, they have faced challenges (e.g., from Web spam) in maintaining the level of scholarly precision—the ratio of relevant citations retrieved by search. This paper describes a hybrid approach that uses online social collaboration and reputation based social moderation to reduce the cost and to speed up the construction of scholarly bibliographies ...

 

How the New Web Generations are Changing Library and Information Services

  [CiTO]
Medical Reference Services Quarterly, Vol. 29, No. 2. (2010), pp. 132-145, doi:10.1080/02763861003723200
posted to defrost by dullhunk on 2010-05-22 15:18:57 ** along with 3 people giorgiobertin mleo1 rrbarb

Abstract

The new Web generations are influencing the minds and changing the habits of software developers and end users. Users, librarians, and information services professionals can interact more efficiently, creating additional information and content and generating knowledge. This new scenario is also changing the behavior of information providers and users in health sciences libraries. This article reviews the new Web environments and tools that give librarians opportunities to tailor their services better, and gives some examples of the advantages and disadvantages for ...

 

EndNote Plus: Enhanced Reference Database and Bibliography Maker

  [CiTO]
Journal of Chemical Information and Computer Sciences, Vol. 32, No. 6. (1 November 1992), pp. 755-756, doi:10.1021/ci00010a601
 

Are Bibliographic Management Software Search Interfaces Reliable?: A Comparison between Search Results Obtained Using Database Interfaces and the EndNote Online Search Function

  [CiTO]
The Journal of Academic Librarianship, Vol. 36, No. 2. (27 March 2010), pp. 144-150, doi:10.1016/j.acalib.2010.01.005

Abstract

The use of bibliographic management software and its internal search interfaces is now pervasive among researchers. This study compares the results between searches conducted in academic databases' search interfaces versus the EndNote search interface. The results show mixed search reliability, depending on the database and type of search performed. ...

 

Creating Scholarly Tools and Resources for the Digital Ecosystem: Building Connections in the Zotero Project

  [CiTO]
First Monday, Vol. 13, No. 8. (4 August 2008)
posted to dan-cohen defrost qotd zotero by dullhunk to the group Journal picks on 2010-04-29 18:07:05 **
 

Teaching computers to read the pharmacogenomics literature ... so you don't have to.

  [CiTO]
Pharmacogenomics, Vol. 11, No. 4. (April 2010), pp. 515-518, doi:10.2217/pgs.10.48
 

Mendeley - A Last.fm For Research?

  [CiTO]
eScience, 2008. eScience '08. IEEE Fourth International Conference on In eScience, 2008. eScience '08. IEEE Fourth International Conference on (12 December 2008), pp. 327-328, doi:10.1109/escience.2008.128

Abstract

This paper aims to explore how the principles of a well-known Web 2.0 service, the world¿s largest social music service "Last.fm" (www.last.fm), can be applied to research, which potential it could have in the world of research (e.g. an open and interdisciplinary database, usage-based reputation metrics, and collaborative filtering) and which challenges such a model would face in academia. A real-world application of these principles, "Mendeley" (www.mendeley.com), will be demoed at the IEEE e-Science Conference 2008. ...

 

Defrosting the Digital Library: Bibliographic Tools for the Next Generation Web

  [CiTO]
PLoS Comput Biol, Vol. 4, No. 10. (31 October 2008), e1000204, doi:10.1371/journal.pcbi.1000204
posted to buggotea citeulike connotea defrost douglas-kell duncan-hull mekentosj mendeley papers refine scifoo steve-pettifer xml-summer-school zotero by dullhunk to the group Hartlibian Research on 2010-01-07 13:12:04 **/Average rating 3.7 along with 409 people and 29 groups 1971biblio A_Carrasco aaltenburger abelibanez acabezas accopeland afaisal agbiotec AGouvousi aida12 ajaymalik AJCann akraemer akriesch aky123 aldra alhoori alun amarois amueller amyfyn Anita13 anitastreicher annampage annefenwood anthrogeek antonkratz applebyb aquiles ararazul arinbasu artaban421 arthurdev aslupe banso barakplasma barry bcondon beanformer belenbbb bennyjello BerndBerndsen Betelgeuse60 bhengeveld birukou bookwormzz bourby brandituttle bsamal bskaalid bumatic buoinfobiblio CameronNeylon carelcad carlblesius carlospinheiro carmas caseybrown cbg cdsouthan cgl cgleaniz chad_davis chenlc03 chrahn christianholz chriswillmott cisevol ckai1 clarabermudez claudia1964 claudine claudiushauptmann cm1acb cogs coldmeadow colombet continea CPAP cristiangutierrez cs02 cucherat curthh cybob10 cyrille daforerog danielafyf Dannycoutinho dariom DavidG67 davidgoppenheimer davidsanchezm dbk dcombe Demeter desantis dgovoni dlweston dmaweb dna Dovile dpf dr_lee_xray drakelibguy druvus eduardoalvarez7 eduardod5 Effie emayorga ergordam esterhasz Etew euanlawson eudominguezmartin evaodancers fcohen fergus fggutierrez fgibson filipmarcinowski fitzgeraldp2 fletchad flipip23 Fneesen fuenfgeld fungal furlong Gaetan Gallegos505 gbouma GeeSharpMinor gego Geknitics gena geraldhebbink giovannicasagrande girabbit GJNauta gnewton guhjy GuillaumeFilteau guillermocobo gzmclib1 hairuo hannahwhaley hazman helenaleon heliopais hiero hilmerfaik hkimura hmedal hmx Horduna houtmane hpaces hughesro ianturton idlegrraphx IgorP ilyashl imchelo INK-SSCI-SCI irishoconnor Irmasanchez IRTADOC ishmael iskanbasal israrelax istoyanov jackguillen jago jalonsoarevalo JanaVotteler jandot Janezhangjy jasonzou jbroer jcherfas jclau jeffschneidewind jennialp JenSie jessicwang jlinglis jmohan jmueller17 joseph_x_zhou jpgrolle jrifon jrmacias jtcribbs JuanGiarrizzo juliac julianyl junwang4 kaffles kbkbk8 ketchum kevinemamy kharke klauso klexa Koh kokphinchooi komada kou_jinsei kristgy kvjanos LauraEMont lawa leonardo lesikv lgibson lhuarotop lilianvt LinaMelo LizAAvila lmichan loritagawa lq408 ltitodem LucioAlencar lucybuykx lxm LyHoang lynnefox lyss malkav30 malkocb MarcoSchmidt MARCOUNAM marelmedina maren maribell martainn martica840527 maumartinez mawds mcentyre mcolmene medicalinformationlibrary meikipp melissacardenas-dow mfenner mihainica mikel_egana mmuecke mneeley mordiano mrvaidya msanchof2009 mseyfang mwd mzkbnt n00c nailest NancyAbigail narroyo natldawson natstreet neils nellapower Nembrod neuralwarp nhoussos niallhaslam nidialj NIlz nklee nlafferty norris npalma nperoni npotters nuin olenorgaard operon overweirktezot pacian pawelsobko pbrannon pdessus pdgf-88 peony petersw petrposik petyado Philonski phreeza pick600 pigironjoe pkonings polivares poloalejandro Prlwrlczkwsky puchu quianominorleo radagabriel rdiaz rdmagnuson rempeljl renatazarate RFMcC richardbickerton richardmcgee rickl rmasur robertlischke robfsouza robsyme rockrescue Rohdium rorecco Rosetta rossmounce rrbarb rschulz ryan sachingarg sainsworth sandracarlalima sarabatts sarahgee saramovahedi sarelfa schoeband Schopfel scmelton sdgsilvana seancsb seika sgessis shikin silberbauer simonalpha sinkovics sirexkat siro skjq Sklavit skonkiel slack---line slariccia slr52 smithrise smu sstose StemCellWorkstation stempvoort stetumin stevepettifer sujaikumar summerschool suribe tag taguchi tanyacovi6 teachingaging tech4trainers techintraining1 telma_lopes TeresitaAmezcua tilanka timhubbard timrwatkins Tita TKAB tlb56 tmar TMichael tnhh tobiasjohansson tomroper Tomste Torsten_Holmer treangen tsetse Turambar tux2000 ugcouto ukppdadsr ulrichs vellino victorantoniomtz virolog voronov vwendel wamserma welliegirl western4uk williamgunn wsumthai wujastyk wwweagle xjlibod yangjustinc yas yochju yorktraining2011 ypjones zbadcat zeiler01 Zephyrus zhuojie zilvlan ZoeThomas zzb3886 zzdhalla BergmanLab Bioinformatics BlaxterLab CIBERLITERATURA UNAM Dentistry Département Hypermédia - Master NET eLearning Gobbledygook Health_Informatics Herramientas20 IECO Information Resources Academic Development Group INK-SSCI-SCI@CiteuLike.org International Migration JLab Journal picks L3T McCammon MEHTRadiology Metals-Conservation mgh-lcs NaCTeM Parenting 2.0 Poverty Alleviation from Access to Knowledge reference manager Science 2.0 / Open Science Semantic-Social-Networks structural_bioinformatics Zotero en español

Abstract

Many scientists now manage the bulk of their bibliographic information electronically, thereby organizing their publications and citation material from digital libraries. However, a library has been described as “thought in cold storage,” and unfortunately many digital libraries can be cold, impersonal, isolated, and inaccessible places. In this Review, we discuss the current chilly state of digital libraries for the computational biologist, including PubMed, IEEE Xplore, the ACM digital library, ISI Web of Knowledge, Scopus, Citeseer, arXiv, DBLP, and Google Scholar. We ...

 

How can we investigate citation behavior? A study of reasons for citing literature in communication

  [CiTO]
J. Am. Soc. Inf. Sci., Vol. 51, No. 7. (May 2000), pp. 635-645, doi:10.1002/(sici)1097-4571(2000)51:7<635::aid-asi6>3.0.co;2-h
posted to defrost by dullhunk on 2009-06-22 15:22:32 ** along with 2 people hpiwowar kharke

Abstract

Authors' motivations for citing documents are addressed through a literature review and an empirical study. Replicating an investigation in psychology, the works of two highly-cited authors in the discipline of communication were identified, and all of the authors who cited them during the period 1995–1997 were surveyed. The instrument posed 32 questions about why a certain document was cited, plus questions about the citer's relationship to the cited author and document. Most findings were similar to the psychology study, including a ...

 

What are journals for?

  [CiTO]
Journal of Biology, Vol. 8, No. 1. (27 January 2009), 1, doi:10.1186/jbiol111
posted to defrost editorial publishing by dullhunk on 2009-01-28 12:00:51 **

Abstract

Here is a truism. The function of a scientific journal is to disseminate the results of research. It also of course has a responsibility to ensure as far as possible that the results reported are valid. But it would seem from the comments of many biologists – sometimes in print [1-3] – that the policing function of journals (especially but not exclusively the high-profile journals) is in danger of overwhelming their primary function as publishers. ...

 

New Science, New Features, New Advisors

  [CiTO]
Cell, Vol. 136, No. 2. (23 January 2009), pp. 197-198, doi:10.1016/j.cell.2009.01.008
posted to defrost editorial emilie-marcus by dullhunk on 2009-01-27 13:02:32 ** along with 1 person druvus

Note (first note only)

One issue in particular that we at Cell will be focusing on in 2009 is redefining what constitutes a “publishable unit” in the age of electronic journals and how we can best present the information content of a scientific article online. The vision in our crystal ball is still blurred, but some key elements are beginning to take shape. The scientific article of the future will no longer be tied to the constraints of a printing press and will take advantage

 

Everything is Miscellaneous: The Power of the New Digital Disorder

  [CiTO]
(01 May 2007)
posted to defrost folksonomy by dbk  on 2009-01-06 09:20:28 read/Average rating 5.0 along with 19 people and 1 group AJCann akpe AlisonBabeu aosbat archivy copyculture dullhunk evanor GJNauta gonz herrmeyer jennifermjones kerim meikipp mfrisque openpad PaulBHartzog pigironjoe shirleyearley eLearning

Abstract

Human beings are information omnivores: we are constantly collecting, labeling, and organizing data. But today, the shift from the physical to the digital is mixing, burning, and ripping our lives apart. In the past, everything had its one place--the physical world demanded it--but now everything has its places: multiple categories, multiple shelves. Simply put, everything is suddenly miscellaneous. In _Everything Is Miscellaneous_, David Weinberger charts the new principles of digital order that are remaking business, education, politics, science, and culture. In his rollicking tour of the rise of the ...

 

I Am Not a Scientist, I Am a Number

  [CiTO]
PLoS Comput Biol, Vol. 4, No. 12. (26 December 2008), e1000247, doi:10.1371/journal.pcbi.1000247
posted to defrost by dbk  on 2008-12-28 00:37:50 ** along with 43 people and 4 groups aberamanda allysonlister alun banso birukou cbg deanmalmgren dswan dullhunk GustavoLacerda henk-cul jcaddy jirak jrw kaniko kevinemamy kshameer lesikv lxm1117 mawds mfenner mmarois nailest nuin pablog phreeza pick600 reyez rs rschulz Schopfel Scis0000002 sebastien_vigneau siebert skonkiel spores stajich thomaskelder tnhh valterbiblio VGreiff Yanno Zephyrus Academic Writing, Literacies and Discourse dbmi-nlp Mycology STS
 

Personalized online information search and visualization.

  [CiTO]
BMC Med Inform Decis Mak, Vol. 5, No. 1. (2005), doi:10.1186/1472-6947-5-6
posted to defrost by dullhunk on 2008-12-01 16:22:04 **

Abstract

BACKGROUND: The rapid growth of online publications such as the Medline and other sources raises the questions how to get the relevant information efficiently. It is important, for a bench scientist, e.g., to monitor related publications constantly. It is also important, for a clinician, e.g., to access the patient records anywhere and anytime. Although time-consuming, this kind of searching procedure is usually similar and simple. Likely, it involves a search engine and a visualization interface. Different words or combination reflects different ...

 

Digital Object Identifiers for scientific data

  [CiTO]
Data Science Journal, Vol. 4 (2005), pp. 12-20, doi:10.2481/dsj.4.12
posted to defrost digital-identity doi by dullhunk  on 2008-12-01 11:25:12 ** along with 1 person and 1 group lmichan Biiiogeek

Abstract

The Digital Object Identifier (DOI) is a system for identifying content objects in the digital environment. DOIs are names assigned to any entity for use on Internet digital networks. Scientific data sets may be identified by DOIs, and several efforts are now underway in this area. This paper outlines the underlying architecture of the DOI system, and two such efforts which are applying DOIs to content objects of scientific data. ...

Note (first note only)

10.2481/dsj.4.12

 

The Social Life of Information

  [CiTO]
(10 March 2000)
posted to defrost by dullhunk  on 2008-11-10 14:29:05 ** along with 45 people and 15 groups A_Olympia aalves achiar Actualal ajpope arthurdev brusilovsky cciledemailly chrishmorris dmboyer douglasthomas draggin hme Hoenikker irenas JayDugger jeffmcneill joemurphy jpassoth KAllendoerfer kbuxton kirstenbell lschiff MorganHill mthomure netzwerkerin Newbridge NML pick600 pigironjoe ProgramandDesign qaramazov RalphPutnam reta scholz shinwhacha sociocybernetics spinster stevebarth sudarshaniisc Taragui uvriss wcrosbie ypjones zephoria Blog_and_Wiki_Research CMU-HCII complex networks CoP_CMS Cybernetics digital_youth Discourse_analysis Enterprise 2.0 Practitioners reading list MASSS Philosophy_of_Information RETA Social Web Sociology what_is_a_library Wikipedia

Abstract

How many times has your PC crashed today? While Gordon Moore's now famous law projecting the doubling of computer power every 18 months has more than borne itself out, it's too bad that a similar trajectory projecting the reliability and usefulness of all that power didn't come to pass, as well. Advances in information technology are most often measured in the cool numbers of megahertz, throughput, and bandwidth--but, for many us, the experience of these advances may be better measured in ...

 

URL decay in MEDLINE—a 4-year follow-up study

  [CiTO]
Bioinformatics, Vol. 24, No. 11. (01 June 2008), pp. 1381-1385, doi:10.1093/bioinformatics/btn127

Abstract

Motivation: Internet-based electronic resources, as given by Uniform Resource Locators (URLs), are being increasingly used in scientific publications but are also becoming inaccessible in a time-dependant manner, a phenomenon documented across disciplines. Initial reports brought attention to the problem, spawning methods of effectively preserving URL content while some journals adopted policies regarding URL publication and begun storing supplementary information on journal websites. Thus, a reexamination of URL growth and decay in the literature is merited to see if the problem has ...

 

Beta blockers?

  [CiTO]
Nature, Vol. 455, No. 7214. (9 October 2008), pp. 708-708, doi:10.1038/455708a

Note (first note only)

Proprietary data formats like Endnote may be legally defensible but open standards can be a better spur for innovation, by Zotero (for example)

 

Why Current Publication Practices May Distort Science

  [CiTO]
PLoS Med, Vol. 5, No. 10. (7 October 2008), e201, doi:10.1371/journal.pmed.0050201
posted to defrost by dullhunk  on 2008-10-07 08:20:16 ** along with 55 people and 6 groups ajaymalik aspen banso brembs cabbagesofdoom CameronNeylon cbg ChaTo cisevol CulCog daforerog danlurie Demeter DGiles Faerk farhat fheintz guhjy heypeggy hmedal hughesro iannis j_rodriguez jago jkstewart jtcribbs kentsis mfenner mikeeck mzkbnt nailest NathalieCornee neils nellapower NIlz ommachi pak pfanderson qwermish renatomilani reyez RichardSWSmith rossmounce shoshin silberbauer skonkiel spores StephanMatthiesen stringertheory tomhebbron viktor21614 vkwn whitead yochju Zephyrus Convention on Knowledge Commons Gobbledygook Jiang Research Group Parenting 2.0 Science 2.0 / Open Science Surface Temperatures of Earth

Abstract

John Ioannidis and colleagues argue that the current system of publication in biomedical research provides a distorted view of the reality of scientific data. ...

 

BibGlimpse: The case for a light-weight reprint manager in distributed literature research

  [CiTO]
BMC Bioinformatics, Vol. 9, No. 1. (2008), 406, doi:10.1186/1471-2105-9-406
posted to bibglimpse defrost pubmed svm by dullhunk  on 2008-10-01 11:32:39 ** along with 10 people and 2 groups barriot briangodsey cisevol druvus Effie guhjy hpiwowar nuin yas zimbo1 BergmanLab NaCTeM

Abstract

BACKGROUND:While text-mining and distributed annotation systems both aim at capturing knowledge and presenting it in a standardized form, there have been few attempts to investigate potential synergies between these two fields. For instance, distributed annotation would be very well suited for providing topic focussed, expert knowledge enriched text corpora. A key limitation for this approach is the availability of literature annotation systems that can be routinely used by groups of collaborating researchers on a day to day basis, not distracting from ...

 

A survey of black-box modernization approaches for information systems

  [CiTO]
Software Maintenance, 2000. Proceedings. International Conference on In Software Maintenance, 2000. Proceedings. International Conference on (2000), pp. 173-183

Abstract

Information systems are critical assets for modern enterprises and incorporate key knowledge acquired over the life of an organization. These systems must be updated continuously to reflect evolving business practices. Unfortunately, repeated modification has a cumulative effect on system complexity, and the rapid evolution of technology quickly renders existing technologies obsolete. Eventually, the existing information systems become too fragile to modify and too important to discard. For this reason, organizations must consider modernizing these legacy systems to remain viable. The commercial ...

 

Library 2.0 and Beyond: Innovative Technologies and Tomorrow's User

  [CiTO]
(30 June 2007)

Abstract

Library 2.0: does everyone seem to know what this means except you? Or are you reasonably well informed but wondering what challenge to take on next? In this new work, Nancy Courtney has assembled some of the most forward looking thinkers in the library world to describe the next generation of online tools. Beginning with Steven J. Bell, each contributor introduces his or her favorite technology, outlines its use, and discusses its potential in today's library environment. Topical coverage includes blogs ...

 

Minority report

  [CiTO]
Nature Geosci, Vol. 1, No. 4. (April 2008), pp. 209-209, doi:10.1038/ngeo174
posted to climatepredictionnet defrost myles-allen by dullhunk on 2008-09-02 14:40:13 **
 

To blog or not to blog?

  [CiTO]
Nature Geosci, Vol. 1, No. 4. (April 2008), pp. 208-208, doi:10.1038/ngeo170
posted to blogging blogosphere defrost by dullhunk on 2008-09-02 14:23:27 ** along with 1 person Enro
 

A Virtual Research Environment (VRE) for Bioscience Researchers

  [CiTO]
Advanced Engineering Computing and Applications in Sciences, 2007. ADVCOMP 2007. International Conference on In Advanced Engineering Computing and Applications in Sciences, 2007. ADVCOMP 2007. International Conference on (2007), pp. 31-38, doi:10.1109/advcomp.2007.14

Abstract

In this paper we present the Research Information Centre (RIC), a virtual research environment being jointly developed by the Technical Computing Group at Microsoft and The British Library. We view researchers as extreme information workers and the purpose of the RIC is to support researchers in managing the increasingly complex range of tasks involved in carrying out research. Our first implementation of the RIC is focused on the biomedical researcher, leveraging commercial off-the-shelf software to the extent possible. However, the base ...

 

Drug discovery in the era of Facebook--new tools for scientific networking.

  [CiTO]
Drug discovery today, Vol. 13, No. 19-20. (1 October 2008), pp. 863-868, doi:10.1016/j.drudis.2008.07.003
posted to defrost drug-discovery facebook by dullhunk  on 2008-08-11 13:28:41 ** along with 13 people agomez AndrewPoirrette druvus flbarroso garuby guhjy jfr jjcain00 paulmcl tbinbal ucbcjbm Yanno zimbo1

Abstract

Social networking is beginning to make an impact on the drug discovery process. While bioinformatics and chemoinformatics underpin research at a scientific level, rapid communication between individual researchers across continents now allows the global exchange of ideas, tools and technologies. Networking at this level of speed and reach is quite a recent phenomenon. It facilitates the development of common interests, accelerates technology transfer and increases ...

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