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Tag divergence [107 articles]

Recent papers classified by the tag divergence.
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to divergence evolution expression gene promoter by zwang on 2008-01-15 16:40:20 as ** along with 8 people and 2 groups balicea kengg biomcgary cisevol caseybrown renatomilani mclarenv Jporci cis-regulatory-evolution BergmanLab
  • Differential translation efficiency of orthologous genes is involved in phenotypic divergence of yeast species.
    Nat Genet (4 February 2007)
    by Orna Man, Yitzhak Pilpel
    posted to divergence ortholog phenotype translation by zwang on 2007-03-19 12:46:58 as ** along with 3 people and 2 groups jwestbrook grahamc bpcusack ParkinsonLab_at_MaRS King_Lab
  • Quaternary Structure Constraints on Evolutionary Sequence Divergence
    Molecular Biology and Evolution, Vol. 24, No. 2. (February 2007), pp. 349-351.
    by Fornasari, Maria Silvina, Parisi, Gustavo, Echave, Julian
    posted to divergence evolution structure by zwang on 2007-04-12 13:19:48 as ** along with 1 person Garamonfok
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to binding divergence site transcription yeast by zwang on 2007-08-13 07:21:50 as *** along with 18 people and 2 groups caseybrown bryankr aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb nklee anka EisenLab cis-regulatory-evolution
  • Gevrey normal forms of vector fields with one zero eigenvalue
    Journal of Mathematical Analysis and Applications, Vol. 344, No. 1. (1 August 2008), pp. 301-321.
    by P Bonckaert, P De Maesschalck
    posted to divergence normal_forms by yakovenko on 2008-04-26 19:32:04 as **
  • Unique resonant normal forms for area preserving maps at an elliptic fixed point
    (9 Sep 2008)
    by V Gelfreich, N Gelfreikh
    posted to singularity normal_forms divergence by yakovenko on 2008-09-10 08:15:27 as **
  • Transseries for beginners
    (31 Jan 2008)
    by GA Edgar
    posted to complex_analysis divergence formal_theory mellin_transform by yakovenko on 2008-02-01 16:59:54 as *** along with 1 person ansobol
  • Mould expansions for the saddle-node and resurgence monomials
    (14 Dec 2007)
    by David Sauzin
    posted to divergence formal_theory normal_forms by yakovenko on 2007-12-17 11:56:35 as ***
  • Machine Translation Divergences: A Formal Description and Proposed Solution
    Computational Linguistics, Vol. 20, No. 4. (1994), pp. 597-633.
    by Bonnie J Dorr
    posted to divergence interlingual lcs machine representation translation by veer on 2007-03-31 12:52:02 as read
  • DUSTer: A Method for Unraveling Cross-Language Divergences for Statistical Word-Level Alignment
    (2002)
    by B Dorr, L Pearl, R Hwa, N Habash
    posted to alignment divergence overcome by veer on 2007-03-31 12:48:42 as read
  • Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: enlarging genus Homo.
    Proc Natl Acad Sci U S A, Vol. 100, No. 12. (10 June 2003), pp. 7181-7188.
    by DE Wildman, M Uddin, G Liu, LI Grossman, M Goodman
    posted to autosomal chimpanzee divergence dna evolution genus hominidae homo human by tkandell on 2005-12-28 09:55:34 as ****
  • Unravelling the evolution of the head lice and body lice of humans.
    Parasitol Res, Vol. 98, No. 1. (December 2005), pp. 44-47.
    by NP Leo, SC Barker
    posted to divergence erectus evolution homo by tkandell on 2005-12-28 10:13:32 as *****
  • New insights into the evolution of chromosome 1.
    Cytogenet Genome Res, Vol. 108, No. 1-3. (2005), pp. 217-222.
    by A Weise, H Starke, K Mrasek, U Claussen, T Liehr
    posted to chimpanzee chromosome_1 divergence evolution human by tkandell on 2006-01-16 06:37:34 as ***
  • Divergence measures based on the Shannon entropy
    Information Theory, IEEE Transactions on, Vol. 37, No. 1. (1991), pp. 145-151.
    by J Lin
    posted to divergence entropy jensenshannon by thorgal on 2006-11-16 19:12:01 as ** along with 4 people and 1 group ejmeij rsantana ciga matjes Computational_Information_Geometry
  • Subfunctionalization of Duplicated Zebrafish pax6 Genes by cis-Regulatory Divergence
    PLoS Genetics, Vol. 4, No. 2. (1 February 2008), e29.
    by Dirk A Kleinjan, Ruth M Bancewicz, Philippe Gautier, Ralf Dahm, Helia B Schonthaler, Giuseppe Damante, Anne Seawright, Ann M Hever, Patricia L Yeyati, Veronica van Heyningen, Pedro Coutinho
    posted to cis-regulatory divergence subfunctionalization zebrafish by Stew on 2008-06-06 08:20:04 as ** along with 4 people brant gjuggler emptyhb maximilianh
  • Using evolutionary rates to investigate protein functional divergence and conservation. A case study of the carbonic anhydrases.
    Genetics, Vol. 164, No. 4. (August 2003), pp. 1261-1269.
    by B Knudsen, MM Miyamoto, PJ Laipis, DN Silverman
    posted to divergence evolutionary functional likelihood rates test by sriram_s on 2006-03-25 00:29:17 as **
  • A likelihood ratio test for evolutionary rate shifts and functional divergence among proteins.
    Proc Natl Acad Sci U S A, Vol. 98, No. 25. (4 December 2001), pp. 14512-14517.
    by B Knudsen, MM Miyamoto
    posted to divergence functional likelihood test by sriram_s on 2006-03-25 00:32:47 as **
  • Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.
    J Mol Biol, Vol. 311, No. 2. (10 August 2001), pp. 395-408.
    by P Aloy, E Querol, FX Aviles, MJ Sternberg
    posted to divergence docking functional prediction site structure-based by sriram_s on 2006-03-24 23:01:42 as read along with 5 people kaarsinogen chrn bicko chad_davis cjeans
  • Divergence or Convergence in Regional Inequality - Consumption Variables versus Policy Variables: The Israeli Case
    by Gabriel Lipshitz
    posted to divergence by spacetime on 2006-04-13 19:07:38 as **
  • Evolution in the fast lane: rapidly evolving sex-related genes in Drosophila.
    Genetics, Vol. 177, No. 3. (November 2007), pp. 1321-1335.
    by W Haerty, S Jagadeeshan, RJ Kulathinal, A Wong, K Ravi Ram, LK Sirot, L Levesque, CG Artieri, MF Wolfner, A Civetta, RS Singh
    posted to biased divergence drosophila expression gene molevoltestis positive sex sfp srr by skumagai on 2008-06-06 14:03:25 as **
  • Divergence population genetics of chimpanzees.
    Molecular biology and evolution, Vol. 22, No. 2. (February 2005), pp. 297-307.
    by YJ Won, J Hey
    posted to chimpanzee divergence dpg genetics population by skumagai on 2008-06-09 14:18:30 as read
  • Extraordinary divergence and positive Darwinian selection in a fusagenic protein coating the acrosomal process of abalone spermatozoa.
    Proc Natl Acad Sci U S A, Vol. 92, No. 11. (23 May 1995), pp. 4957-4961.
    by WJ Swanson, VD Vacquier
    posted to abalone darwinian divergence evolution molevoltestis positive selection sperm by skumagai on 2008-06-06 16:14:59 as read along with 1 person and 1 group stevanspringer FAB-lab
  • Evolution of specialization and ecological character displacement of herbivores along a gradient of plant quality.
    Evolution; international journal of organic evolution, Vol. 59, No. 3. (March 2005), pp. 507-520.
    by M Egas, MW Sabelis, U Dieckmann
    posted to specialization divergence displacement character adaptive by skumagai on 2008-10-14 01:39:36 as read
  • Inferring the fitness effects of DNA mutations from polymorphism and divergence data: statistical power to detect directional selection under stationarity and free recombination.
    Genetics, Vol. 151, No. 1. (January 1999), pp. 221-238.
    by H Akashi
    posted to data divergence fitness molevoltestis polymorphism simulated by skumagai on 2008-06-06 01:37:15 as read along with 2 people bpb CharlesM
  • Termination, deadlock, and divergence
    J. ACM, Vol. 39, No. 1. (January 1992), pp. 147-187.
    by L Aceto, M Hennessy
    posted to termination divergence deadlock concurrency chu-space by scis0000001 on 2007-01-12 19:58:07 as **
  • Forces Shaping the Fastest Evolving Regions in the Human Genome
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e168.
    by Katherine S Pollard, Sofie R Salama, Bryan King, Andrew D Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob S Pedersen, Gill Bejerano, Robert Baertsch, Kate R Rosenbloom, Jim Kent, David Haussler
    posted to animals divergence dna evolution genome hominidae humans mammals rates substitution-models by rvosa on 2008-08-12 04:13:37 as ** along with 2 people and 2 groups nickluscombe iris42 EBI-regulation FAB-lab
  • Detecting the Node-Density Artifact in Phylogeny Reconstruction
    Systematic Biology, Vol. 55, No. 4. (August 2006), pp. 637-643.
    by Chris Venditti, Andrew Meade, Mark Pagel
    posted to algorithms clock-like divergence diversification inference likelihood phylogeny reconstruction substitution-models by rvosa on 2007-11-20 02:29:50 as **
  • The likelihood node density effect and consequences for evolutionary studies of molecular rates
    Evolution, Vol. 61, No. 10., pp. 2293-2307.
    by Andrew F Hugall, Michael S Lee
    posted to bayesian divergence likelihood phylogeny reconstruction substitution-models by rvosa on 2007-11-20 00:54:26 as **
  • Molecular Evolution in the Descent of Man
    Nature, Vol. 233, No. 5322. (29 October 1971), pp. 604-613.
    by Morris Goodman, JOHN Barnabas, Genji Matsuda, William G Moore
    posted to amino-acid clock-like divergence diversification evolution mammals primates rates sequence-evolution by rvosa on 2008-08-09 06:20:56 as **
  • Rate of Fixation of Nucleotide Substitutions in Evolution
    Nature, Vol. 224, No. 5215. (11 October 1969), pp. 149-154.
    by Charles D Laird, Betty L Mcconaughy, Brian J Mccarthy
    posted to animals clock-like divergence dna evolution hominidae humans mammals primates rates sequence-evolution by rvosa on 2008-08-09 06:30:53 as **
  • Absolute diversification rates in angiosperm clades.
    Evolution Int J Org Evolution, Vol. 55, No. 9. (September 2001), pp. 1762-1780.
    by S Magallón, MJ Sanderson
    posted to clock-like comparative divergence diversification inference phylogeny reconstruction supertree by rvosa on 2005-10-13 13:03:24 as ** along with 1 group FAB-lab
  • Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection.
    Philos Trans R Soc Lond B Biol Sci, Vol. 359, No. 1450. (29 October 2004), pp. 1477-1483.
    by TJ Near, MJ Sanderson
    posted to clock-like divergence fossils inference likelihood reconstruction substitution-models by rvosa on 2005-10-13 12:58:12 as ** along with 1 group FAB-lab
  • notes Frequency of word-use predicts rates of lexical evolution throughout Indo-European history
    Nature, Vol. 449, No. 7163. (11 October 2007), pp. 717-720.
    by Mark Pagel, Quentin D Atkinson, Andrew Meade
    posted to bayesian clock-like comparative divergence lexicostatistics phylogeny by rvosa on 2007-10-11 04:22:49 as read along with 7 people baronka junwang4 briordan alexsteer shivakmr subhacom julianjonker
  • notes Positive selection, relaxation, and acceleration in the evolution of the human and chimp genome.
    PLoS Comput Biol, Vol. 2, No. 4. (April 2006)
    by L Arbiza, J Dopazo, H Dopazo
    posted to adaptation animals clock-like comparative data-mining divergence dna genetics genome hominidae humans mammals nuclear ontology phylogenomics primates protein proteins rates ratio-test selection sequence-evolution by rvosa on 2008-08-11 03:11:42 as read along with 5 people and 3 groups operon marcius jordibc hdopazo Garamonfok BioinfoCIPF SGU-CIPF FAB-lab
  • Maximum-Likelihood Estimation of Population Divergence Times and Population Phylogeny in Models without Mutation
    Evolution, Vol. 52, No. 3. (1998), pp. 669-677.
    by Rasmus Nielsen, Joanna L Mountain, John P Huelsenbeck, Montgomery Slatkin
    posted to bayesian clock-like divergence likelihood reconstruction substitution-models by rvosa on 2005-10-12 21:39:39 as ** along with 1 person and 1 group jmeppley FAB-lab
  • Timing the origin of New World monkeys.
    Molecular Biology And Evolution, Vol. 20, No. 10. (October 2003), pp. 1620-1625.
    by Carlos G Schrago, Claudia AM Russo
    posted to animals cebidae cercopithecidae divergence diversification dna evolution extinction hominidae humans mammals mitochondrial phylogeny reconstruction sequence speciation vertebrates by rvosa on 2005-10-12 21:12:39 as ** along with 1 group FAB-lab
  • Correlates of substitution rate variation in mammalian protein-coding sequences
    BMC Evolutionary Biology, Vol. 8 (19 February 2008), 53.
    by John J Welch, Olaf RP Bininda-Emonds, Lindell Bromham
    posted to animals clock-like comparative divergence life-history mammals rates substitution-models by rvosa on 2008-08-09 20:49:43 as ** along with 1 group FAB-lab
  • The delayed rise of present-day mammals
    Nature, Vol. 446, No. 7135. (2007), pp. 507-512.
    by Olaf RP Bininda-Emonds, Marcel Cardillo, Kate E Jones, Ross DE Macphee, Robin MD Beck, Richard Grenyer, Samantha A Price, Rutger A Vos, John L Gittleman, Andy Purvis
    posted to biodiversity clock-like divergence diversification fossils phylogeny phyloinformatics primates ratio-test reconstruction substitution-models supertree by rvosa on 2007-10-13 22:04:44 as read along with 4 people and 2 groups gjuggler dchughes nurban dwildman G4ID Genetics-of-Gambling
  • Rates of DNA sequence evolution differ between taxonomic groups
    Science, Vol. 231, No. 4744. (21 March 1986), pp. 1393-1398.
    by RJ Britten
    posted to animals clock-like divergence dna humans mammals primates rates sequence-evolution by rvosa on 2008-08-09 07:28:06 as ** along with 1 group FAB-lab
  • Molecular Clock Calibrations and Metazoan Divergence Dates
    Journal of Molecular Evolution, Vol. 49, No. 3. (1999), pp. 385-391.
    by Michael SY Lee
    posted to clock-like divergence fossils likelihood phylogeny by rvosa on 2007-11-19 22:00:17 as **
  • Detecting lineage-specific adaptive evolution of brain-expressed genes in human using rhesus macaque as outgroup
    Genomics, Vol. 88, No. 6. (December 2006), pp. 745-751.
    by Xiao-Jing Yu, Hong-Kun Zheng, Jun Wang, Wen Wang, Bing Su
    posted to adaptation alignment amino-acid animals anthropology clock-like comparative data-mining divergence dna encephalization evolution genetics genome hominidae humans mammals models phylogenomics primates protein proteins proteomics rates ratio-test selection sequence-evolution by rvosa on 2008-08-12 08:00:47 as ** along with 1 group FAB-lab
  • Temporal scaling of molecular evolution in primates and other mammals.
    Mol Biol Evol, Vol. 3, No. 3. (May 1986), pp. 205-221.
    by PD Gingerich
    posted to clock-like comparative divergence phylogeny reconstruction substitution-models by rvosa on 2005-10-12 21:28:42 as ** along with 1 group FAB-lab
  • Large punctuational contribution of speciation to evolutionary divergence at the molecular level.
    Science, Vol. 314, No. 5796. (6 October 2006), pp. 119-121.
    by M Pagel, C Venditti, A Meade
    posted to clock-like divergence dna evolution phylogeny rates speciation substitution-models by rvosa on 2008-08-09 11:44:50 as ** along with 4 people and 2 groups knaseanka brant bpcusack shikin EisenLab FAB-lab
  • The relationship between sequence and interaction divergence in proteins.
    J Mol Biol, Vol. 332, No. 5. (3 October 2003), pp. 989-998.
    by P Aloy, H Ceulemans, A Stark, RB Russell
    posted to divergence evolution interaction sequence by RebeccaHamer on 2008-01-21 15:52:11 as read along with 5 people karbak bicko chad_davis drastic ruvido
  • Inductive Inference for Solving Divergence in Knuth-Bendix Completion
    (1989), pp. 288-303.
    by Muffy Thomas, Klaus P Jantke
    posted to completion divergence by radico on 2007-10-19 15:47:28 as **
  • Solving Divergence in Knuth-Bendix Completion by Enriching Signatures
    (1992), pp. 377-390.
    by Muffy Thmoas, Phil Watson
    posted to completion divergence by radico on 2007-08-14 18:07:38 as **
  • Chain Properties of Rule Closures
    (1989), pp. 339-347.
    by Miki Hermann
    posted to divergence by radico on 2008-01-28 09:34:47 as **
  • A Divergence Critic for Inductive Proof
    Journal of Artificial Intelligence Research, Vol. 4 (1996), pp. 209-235.
    by Toby Walsh
    posted to divergence lemma-generation by radico on 2007-09-21 07:43:46 as **
  • Divergence phenomena during completion
    (1991), pp. 374-385.
    by Andrea Sattler-Klein
    posted to completion divergence by radico on 2007-08-14 18:58:43 as **
  • It is undecidable whether the Knuth-Bendix completion procedure generates a crossed pair
    STACS 89 (1989), pp. 348-359.
    by Paliath Narendran, Jonathan Stillman
    posted to divergence by radico on 2008-02-01 14:01:28 as **
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