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Tag dna [779 articles]

Recent papers classified by the tag dna.
  • In vitro analysis of DNA-protein interactions by proximity ligation.
    Proc Natl Acad Sci U S A, Vol. 104, No. 9. (27 February 2007), pp. 3067-3072.
    by SM Gustafsdottir, J Schlingemann, A Rada-Iglesias, E Schallmeiner, M Kamali-Moghaddam, C Wadelius, U Landegren
    posted to dna interaction protein by zwang on 2007-04-23 04:06:15 as ** along with 2 people and 1 group jyuh dpollard EisenLab
  • Quantifying DNA-protein binding specificities by using oligonucleotide mass tags and mass spectroscopy
    PNAS, Vol. 104, No. 9. (27 February 2007), pp. 3061-3066.
    by Lingang Zhang, Simon Kasif, And C Cantor
    posted to dna massspectroscopy oligonucleotide protein by zwang on 2007-04-23 04:03:20 as ** along with 2 people and 1 group jyuh cwbrown EisenLab
  • Single-Molecule DNA Sequencing of a Viral Genome
    Science, Vol. 320, No. 5872. (4 April 2008), pp. 106-109.
    by Timothy D Harris, Phillip R Buzby, Hazen Babcock, Eric Beer, Jayson Bowers, Ido Braslavsky, Marie Causey, Jennifer Colonell, James Dimeo, William J Efcavitch, Eldar Giladi, Jaime Gill, John Healy, Mirna Jarosz, Dan Lapen, Keith Moulton, Stephen R Quake, Kathleen Steinmann, Edward Thayer, Anastasia Tyurina, Rebecca Ward, Howard Weiss, Zheng Xie
    posted to dna genome sequence virus by zwang on 2008-04-07 15:57:43 as ** along with 14 people and 3 groups jyuh vmarshal ilyaf austin operon dchughes samjlord neils cabbagezs kinestetika benlin caseybrown kjglennie melting moernerlab Microbial-Ecology microbiology_nijmegen
  • A Discrete Class of Intergenic DNA Dictates Meiotic DNA Break Hotspots in Fission Yeast
    PLoS Genetics, Vol. 3, No. 8. (1 August 2007), e141.
    by Gareth A Cromie, Randy W Hyppa, Hugh P Cam, Joseph A Farah, Shiv I Grewal, Gerald R Smith
    posted to dna yeast by zwang on 2007-09-03 15:17:43 as *
  • Simulating DNA coding sequence evolution with EvolveAGene 3
    Mol Biol Evol (12 January 2008), msn008.
    by Barry G Hall
    posted to dna evolution sequence simulation by zwang on 2008-04-10 11:24:26 as *** along with 4 people adacier operon aprasad friendpine
  • Single-molecule analysis of DNA-protein complexes using nanopores
    Nature Methods, Vol. 4, No. 4. (04 March 2007), pp. 315-317.
    by Breton Hornblower, Amy Coombs, Richard D Whitaker, Anatoly Kolomeisky, Stephen J Picone, Amit Meller, Mark Akeson
    posted to complex dna nanopore protein singlemolecule by zwang on 2007-04-04 15:02:49 as *
  • Comparing whole genomes using DNA microarrays
    Nat Rev Genet, Vol. 9, No. 4. (April 2008), pp. 291-302.
    by David Gresham, Maitreya J Dunham, David Botstein
    posted to dna genome microarray by zwang on 2008-03-20 13:03:01 as ** along with 5 people thomaskelder giovenko shinetmt jo_davies jyuh
  • Precise physical models of protein-DNA interaction from high-throughput data
    PNAS, Vol. 104, No. 2. (9 January 2007), pp. 501-506.
    by Justin B Kinney, Gasper Tkacik, Curtis G Callan
    posted to dna interaction protein by zwang on 2007-04-16 13:55:19 as ** along with 2 people aalibes emptyhb
  • The sensitive side of protein-DNA interactions
    Nature Methods, Vol. 4, No. 4., pp. 298-299.
    by Allison Doerr
    posted to dna interaction protein by zwang on 2007-04-04 11:11:10 as **
  • Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters.
    PLoS Genet, Vol. 3, No. 10. (26 October 2007), pp. 2023-2036.
    by L Shen, Y Kondo, Y Guo, J Zhang, L Zhang, S Ahmed, J Shu, X Chen, RA Waterland, JP Issa
    posted to dna genome-wide methylation promoter by zwang on 2007-11-20 08:55:18 as ** along with 1 person sebastien_vigneau
  • An Approach to Predict Transcription Factor DNA Binding Site Specificity Based upon Gene and Transcription Factor Functional Categorization
    Bioinformatics (10 July 2007), btm348.
    by Ziliang Qian, Lingyi Lu, Xiaojun Liu, Yu-Dong Cai, Yixue Li
    posted to binding dna gene prediction site transcription by zwang on 2007-08-15 03:43:07 as *** along with 1 person xili03
  • Discovering Motifs in Ranked Lists of DNA Sequences
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e39.
    by Eran Eden, Doron Lipson, Sivan Yogev, Zohar Yakhini
    posted to dna motif by zwang on 2007-03-30 08:47:32 as *** along with 6 people isimpson eckart_bindewald GeeSharpMinor ppark idonaldson hpaces
  • Molecular dynamics simulations of nucleic acid-protein complexes
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Mackerell, Lennart Nilsson
    posted to complex dna dynamics protein rna by zwang on 2008-02-27 02:28:21 as *** along with 3 people and 1 group ruvido sobolevnrm phoenixzxl baker-group
  • Footprinting protein-DNA complexes using the hydroxyl radical
    Nat. Protocols, Vol. 3, No. 6. (June 2008), pp. 1092-1100.
    by Swapan S Jain, Thomas D Tullius
    posted to protein dna complex by zwang on 2008-07-04 03:34:52 as **
  • Genome-wide mapping of allele-specific protein-DNA interactions in human cells
    Nature Methods, Vol. 5, No. 4. (16 March 2008), pp. 307-309.
    by Nathaniel D Maynard, Jing Chen, Rhona K Stuart, Jian-Bing Fan, Bing Ren
    posted to dna genome-wide interaction protein by zwang on 2008-04-02 07:26:10 as ** along with 3 people inesdesantiago eskay jyuh
  • DNA Familial Binding Profiles Made Easy: Comparison of Various Motif Alignment and Clustering Strategies
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e61.
    by Shaun Mahony, Philip E Auron, Panayiotis V Benos
    posted to clustering dna motif by zwang on 2007-04-19 15:10:17 as * along with 3 people aalibes nklee heliopais
  • Inferring condition-specific transcription factor function from DNA binding and gene expression data
    Mol Syst Biol, Vol. 3 (17 April 2007)
    by Rachel P Mccord, Michael F Berger, Anthony A Philippakis, Martha L Bulyk
    posted to dna geneexpression transcription by zwang on 2007-04-17 17:26:26 as **
  • DNA methylation in breast and colorectal cancers
    Modern Pathology, Vol. aop, No. current.
    by Anshu Agrawal, Richard F Murphy, Devendra K Agrawal
    posted to methylation dna cancer breast by Zephyrus on 2008-07-17 00:39:14 as **
  • Development of a DNA-Labeling System for Array-Based Comparative Genomic Hybridization
    J Biomol Tech, Vol. 16, No. 2. (1 June 2005), pp. 104-111.
    by Pauline T Lieu, Peter Jozsi, Patrick Gilles, Todd Peterson
    posted to dna labeling microarray by yevishere on 2008-01-04 21:11:29 as **
  • From the Cover: Fast dynamics of supercoiled DNA revealed by single-molecule experiments
    Proceedings of the National Academy of Sciences, Vol. 104, No. 29. (17 July 2007), pp. 11957-11962.
    by Aurelien Crut, Daniel A Koster, Ralf Seidel, Chris H Wiggins, Nynke H Dekker
    posted to dna by yanjiang on 2007-10-02 01:20:39 as **
  • notes Array-based electrical detection of DNA with nanoparticle probes.
    Science, Vol. 295, No. 5559. (22 February 2002), pp. 1503-1506.
    by SJ Park, TA Taton, CA Mirkin
    posted to nanoparticle dna array by yanjiang on 2007-02-05 18:39:58 as * along with 1 person and 1 group stsaft moernerlab
  • Novel method of DNA extraction from bones assisted DNA identification of World Trade Center victims
    International Congress Series, Vol. 1261 (April 2004), pp. 553-555.
    by T Bille, R Wingrove, M Holland, C Holland, C Cave, J Schumm
    posted to bone dna extraction by Yamo20 on 2006-11-07 12:19:27 as ** along with 4 people and 2 groups dchughes EstherThomas Beth beanders09 G4ID Genetics-of-Gambling
  • DNA typing from skeletal remains following an explosion in a military fort--first experience in Ecuador (South-America)
    Legal Medicine, Vol. 7, No. 5. (October 2005), pp. 314-318.
    by Fabricio Gonz[x00e1]lez-Andrade, Dora S[x00e1]nchez
    posted to bone dna by Yamo20 on 2006-11-07 12:15:29 as **** along with 2 people and 2 groups dchughes emma88 G4ID Genetics-of-Gambling
  • Statistical evaluation of alternative models of human evolution
    Proceedings of the National Academy of Sciences (31 October 2007), 0708280104.
    by Nelson J Fagundes, Nicolas Ray, Mark Beaumont, Samuel Neuenschwander, Francisco M Salzano, Sandro L Bonatto, Laurent Excoffier
    posted to america dna human-evolution out-of-africa by xosepedro on 2007-11-13 09:38:06 as *** along with 7 people A_Olympia Einat EsepBib joepickrell nurban ryanraaum wsjames
  • notes Sequencing by hybridization (SBH): advantages, achievements, and opportunities.
    Adv Biochem Eng Biotechnol, Vol. 77 (2002), pp. 75-101.
    by R Drmanac, S Drmanac, G Chui, R Diaz, A Hou, H Jin, P Jin, S Kwon, S Lacy, B Moeur, J Shafto, D Swanson, T Ukrainczyk, C Xu, D Little
    posted to dna hybridization methods microarray review sanger sequencing techniques by xico on 2007-02-13 00:36:40 as read along with 1 person and 3 groups dchughes WetBiology G4ID Genetics-of-Gambling
  • The human beta-globin replication initiation region consists of two modular independent replicators.
    Mol Cell Biol, Vol. 24, No. 8. (April 2004), pp. 3373-3386.
    by L Wang, CM Lin, S Brooks, D Cimbora, M Groudine, MI Aladjem
    posted to beta-globin dna initiation origin region replication replicator by xico on 2006-04-04 19:11:26 as *** along with 1 group WetBiology
  • Transgenic DNA introgressed into traditional maize landraces in Oaxaca, Mexico.
    Nature, Vol. 414, No. 6863. (29 November 2001), pp. 541-543.
    by D Quist, IH Chapela
    posted to biotechnology business dna gmo introgression maize mexico transgenic by xico on 2007-06-01 19:12:37 as ** along with 1 group WetBiology
  • ERK1 activation is required for S-phase onset and cell cycle progression after fertilization in sea urchin embryos
    Development, Vol. 132, No. 3. (1 February 2005), pp. 579-589.
    by Rada Philipova, Jolanta Kisielewska, Pin Lu, Mark Larman, Jun-Yong Huang, Michael Whitaker
    posted to ca2 calcium cdk1 cdk2 development dna early embryogenesis erk1 fertilization influx kinase mapk onset replication s-phase sea urchin by xico on 2007-06-27 21:13:12 as ** along with 1 group WetBiology
  • Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments.
    Trends Genet, Vol. 21, No. 2. (February 2005), pp. 93-102.
    by JM Johnson, S Edwards, D Shoemaker, EE Schadt
    posted to antisense dark dna genome hybridization intergenic junk matter micro-array region review tiling transcription transcriptome by xico on 2007-07-06 19:10:13 as **** along with 6 people and 3 groups greg briann cassj eoghanharr imouthesmp adepace spliceml EisenLab WetBiology
  • Unraveling the Fanconi anemia–DNA repair connection
    Nature Genetics, Vol. 37, No. 9., pp. 921-922.
    by Larry H Thompson
    posted to anemia dna fanconi repair by xico on 2007-06-01 18:01:27 as ** along with 1 person and 1 group ecattell WetBiology
  • Celebrity genomes alarm researchers
    Nature, Vol. 447, No. 7143. (23 May 2007), pp. 358-359.
    by Erika Check
    posted to alarm celebrity danger dna genome genomics sequencing watson by xico on 2007-06-01 17:52:20 as **** along with 1 person and 1 group dullhunk WetBiology
  • Advances in mechanisms of genetic instability related to hereditary neurological diseases.
    Nucleic Acids Res, Vol. 33, No. 12. (2005), pp. 3785-3798.
    by RD Wells, R Dere, ML Hebert, M Napierala, LS Son
    posted to disease dna genetic hereditary instabilty neurological review by xico on 2006-02-16 19:49:38 as *** along with 1 person and 1 group txt WetBiology
  • The left-handed double helical nucleic acids.
    Acta Biochim Pol, Vol. 48, No. 2. (2001), pp. 295-312.
    by BA Brown, A Rich
    posted to ada adenosine deaminase dna editing left-handed review rna z-dna by xico on 2006-02-20 23:56:03 as *** along with 1 group WetBiology
  • Genomic specification and epigenetic regulation of eukaryotic DNA replication origins.
    EMBO J, Vol. 23, No. 22. (10 November 2004), pp. 4365-4370.
    by F Antequera
    posted to dna epigenetic origin regulation replication specification by xico on 2006-03-02 02:25:10 as **** along with 1 group WetBiology
  • ATP hydrolysis by ORC catalyzes reiterative Mcm2-7 assembly at a defined origin of replication.
    Mol Cell, Vol. 16, No. 6. (22 December 2004), pp. 967-978.
    by JL Bowers, JC Randell, S Chen, SP Bell
    posted to atp dna hydrolysis mcm mcm2-7 orc origin replication by xico on 2005-12-26 22:36:14 as *** along with 1 group WetBiology
  • DNA replication checkpoint prevents precocious chromosome segregation by regulating spindle behavior.
    Mol Cell, Vol. 16, No. 5. (3 December 2004), pp. 687-700.
    by V Krishnan, S Nirantar, K Crasta, AY Cheng, U Surana
    posted to checkpoint chromosome dna replication segregation spindle by xico on 2005-12-26 00:46:37 as **** along with 1 group WetBiology
  • Origins of DNA replication in the three domains of life
    FEBS J, Vol. 272, No. 15. (1 August 2005), pp. 3757-3766.
    by Nicholas P Robinson, Stephen D Bell
    posted to dna origin replication review by xico on 2005-12-23 22:38:49 as **** along with 2 people and 1 group web20student gurkanbebek WetBiology
  • DNA polymorphisms in the tetrahydrocannabinolic acid (THCA) synthase gene in "drug-type" and "fiber-type" Cannabis sativa L.
    Forensic Science International, Vol. 159, No. 2-3. (2 June 2006), pp. 132-140.
    by Mareshige Kojoma, Hikaru Seki, Shigeo Yoshida, Toshiya Muranaka
    posted to thca thc synthase polymorphism marijuana hemp gene fiber-type drug-type dna cdb cannabis biosynthesis by xico on 2008-05-23 01:52:35 as **
  • Ethical-legal problems of DNA databases in criminal investigation.
    J Med Ethics, Vol. 26, No. 4. (August 2000), pp. 266-271.
    by M Guillén, MV Lareu, C Pestoni, A Salas, A Carracedo
    posted to database dna forensic by wrightj47 on 2006-03-23 14:06:02 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • DNA fingerprinting on trial: the dramatic early history of a new forensic technique.
    Endeavour, Vol. 29, No. 3. (September 2005), pp. 126-131.
    by JD Aronson
    posted to database dna forensic by wrightj47 on 2006-03-23 14:05:33 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • The evolution of DNA databases--recommendations for new European STR loci.
    Forensic Sci Int, Vol. 156, No. 2-3. (27 January 2006), pp. 242-244.
    by P Gill, L Fereday, N Morling, PM Schneider
    posted to database dna forensic by wrightj47 on 2006-03-23 14:02:57 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • DNA flexibility studied by covalent closure of short fragments into circles.
    Proc Natl Acad Sci U S A, Vol. 78, No. 8. (August 1981), pp. 4833-4837.
    by D Shore, J Langowski, RL Baldwin
    posted to dna frags by wilsoros on 2006-09-18 19:30:11 as **
  • DNA-binding domains of Fos and Jun do not induce DNA curvature: an investigation with solution and gel methods.
    Proc Natl Acad Sci U S A, Vol. 95, No. 4. (17 February 1998), pp. 1404-1409.
    by A Sitlani, DM Crothers
    posted to dna modeling by wilsoros on 2006-09-18 19:24:31 as **
  • Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique dinucleotide steps.
    Biophys J, Vol. 89, No. 6. (December 2005), pp. 3721-3740.
    by SB Dixit, DL Beveridge, DA Case, TE Cheatham, E Giudice, F Lankas, R Lavery, JH Maddocks, R Osman, H Sklenar, KM Thayer, P Varnai
    posted to dna modeling molecular stiffness by wilsoros on 2006-09-18 19:21:30 as **
  • Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps.
    Biophys J, Vol. 87, No. 6. (December 2004), pp. 3799-3813.
    by DL Beveridge, G Barreiro, KS Byun, DA Case, TE Cheatham, SB Dixit, E Giudice, F Lankas, R Lavery, JH Maddocks, R Osman, E Seibert, H Sklenar, G Stoll, KM Thayer, P Varnai, MA Young
    posted to computational dna stiffness by wilsoros on 2006-09-18 19:17:06 as **
  • Tension-dependent DNA cleavage by restriction endonucleases: Two-site enzymes are "switched off" at low force
    PNAS, Vol. 103, No. 31. (1 August 2006), pp. 11555-11560.
    by Gregory J Gemmen, Rachel Millin, Douglas E Smith
    posted to dna tension by wilsoros on 2006-10-26 22:57:27 as **
  • Evolution of a novel family of nuclear receptors with members that each contain two DNA binding domains
    BMC Evolutionary Biology, Vol. 7 (23 February 2007), 27.
    by Wenjie Wu, Edward G Niles, Hirohisa Hirai, Philip T Loverde
    posted to binding dna domains novel nuclear receptor subfamily two by wenjiewu on 2007-10-10 07:32:30 as ***** along with 1 person ajaymalik
  • Spring-Loaded Mechanism of DNA Unwinding by Hepatitis C Virus NS3 Helicase
    Science, Vol. 317, No. 5837. (27 July 2007), pp. 513-516.
    by Sua Myong, Michael M Bruno, Anna M Pyle, Taekjip Ha
    posted to dna helicase single-molecule by wduim on 2007-08-08 21:07:59 as *** along with 1 person yusdi
  • DNA-programmable nanoparticle crystallization
    Nature, Vol. 451, No. 7178. (31 January 2008), pp. 553-556.
    by Sung Y Park, Abigail K Lytton-Jean, Byeongdu Lee, Steven Weigand, George C Schatz, Chad A Mirkin
    posted to dna nanoparticle by waszak on 2008-02-01 20:51:01 as ** along with 2 people stsaft dna
  • Discovery, Characterization, and Optimization of an Unnatural Base Pair for Expansion of the Genetic Alphabet
    J. Am. Chem. Soc. (25 January 2008)
    by AM Leconte, GT Hwang, S Matsuda, P Capek, Y Hari, FE Romesberg
    posted to genetics dna by waszak on 2008-06-10 00:43:24 as ** along with 4 people operon pansapiens shikin kevinchannon
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