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Recent papers classified by the tag dna-binding.

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	Bayesian network analysis of targeting interactions in chromatin [My Copy] Genome Research In Genome Research (9 December 2009) by Bas van Steensel, Ulrich Braunschweig, Guillaume J. Filion, Menzies Chen, Joke G. van Bemmel, Trey Ideker posted to protein-dna-interaction dna-binding chromatin bayesian-network by frohike on 2009-12-10 10:07:26 as along with 3 people and 1 group kshameer daveGerrard farhat BergmanLab
	An ensemble model of competitive multi-factor binding of the genome. [My Copy] Genome research, Vol. 19, No. 11. (31 November 2009), pp. 2101-2112. by Todd Wasson, Alexander J. Hartemink posted to nucleosome dna-binding by natstreet on 2009-09-01 08:22:35 as along with 7 people roys djkt megraw vingron xianjun owhitney bpcusack
	The energetics of HMG box interactions with DNA: thermodynamics of the DNA binding of the HMG box from mouse sox-51 [My Copy] Journal of Molecular Biology, Vol. 294, No. 4. (10 December 1999), pp. 997-1013. by Peter L. Privalov, Ilian Jelesarov, Christopher M. Read, Anatoly I. Dragan, Colyn Crane-Robinson posted to dna-binding hmg-box sox thermodynamics by llcl on 2009-07-10 18:14:22 as
	Determinants of Specific Binding of HMGB1 Protein to Hemicatenated DNA Loops [My Copy] Journal of Molecular Biology, Vol. 353, No. 4. (04 November 2005), pp. 822-837. by Sandrine Jaouen, Leanne de Koning, Claire Gaillard, Eva Muselíková-Polanská, Michal Štros, François Strauss posted to dna-binding dna-hemicatenanes hmg-box sry-gene by llcl on 2009-07-10 17:59:42 as
	Phosphorylation of an N-terminal Motif Enhances DNA-binding Activity of the Human SRY Protein [My Copy] J. Biol. Chem., Vol. 273, No. 14. (3 April 1998), pp. 7988-7995. by Marion Desclozeaux, Francis Poulat, Pascal Barbara, et al.Jean-Paul Capony, Patric Turowski, Philippe Jay, Catherine Mejean, Brigitte Moniot, Brigitte Boizet, Philippe Berta posted to dna-binding sry-gene sry-phosphorilation by llcl on 2009-07-10 16:48:39 as
	DNA binding activity studies and computational approach of mutant SRY in patients with 46, XY complete pure gonadal dysgenesis [My Copy] Molecular and Cellular Endocrinology, Vol. 299, No. 2. (27 February 2009), pp. 212-218. by I. Sanchezmoreno, P. Canto, P. Munguia, et al.M. Deleon, B. Cisneros, F. Vilchis, E. Reyes, J. Mendez posted to dna-binding mutant sry-gene by llcl on 2009-07-10 16:32:46 as
	Identification and analysis of DNA-binding transcription factors in Bacillus subtilisand other Firmicutes- a genomic approach [My Copy] BMC Genomics, Vol. 7 (13 June 2006), 147. by Samadhi Moreno-Campuzano, Sarath C. Janga, Ernesto Perez-Rueda posted to bacillus clostridium dna-binding factors firmicutes genomic subtilis transcription by Winzer on 2009-04-30 16:59:46 as along with 1 person druvus
	The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. [My Copy] Nucleic acids research, Vol. 28, No. 8. (15 April 2000), pp. 1838-1847. by E. Pérez-Rueda, J. Collado-Vides posted to coli dna-binding escherichia regulators repertoire transcriptional by Winzer on 2009-04-30 16:56:57 as along with 3 people and 1 group enelkinsan nickluscombe discreteonyxorb EBI-regulation
	Prediction of DNA-binding residues in proteins from amino acid sequences using a random forest model with a hybrid feature [My Copy] Bioinformatics (12 November 2008), btn583. by Jiansheng Wu, Hongde Liu, Xueye Duan, et al.Yan Ding, Hongtao Wu, Yunfei Bai, Xiao Sun posted to dna-binding prediction by marti on 2009-01-15 18:06:14 as along with 2 people lptolik hugowill
	Design and analysis of ChIP-seq experiments for DNA-binding proteins. [My Copy] Nature biotechnology, Vol. 26, No. 12. (16 December 2008), pp. 1351-1359. by Peter V. Kharchenko, Michael Y. Tolstorukov, Peter J. Park posted to chip dna-binding sequencing by coela on 2008-12-07 23:30:16 as along with 19 people and 2 groups hzoltan stubrown guhjy gdb tonamswish ewilban1 ekotelnikova jfr floatingpoint idonaldson inesdesantiago WanderingAengus vplagnol xwbcn fpattyn mutagenic kengg rschulz ghattem KCL & UCL Bioinformatics SIMR bioinformatics
	Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals [My Copy] PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000216. by Yair Field, Noam Kaplan, Yvonne Fondufe-Mittendorf, et al.Irene K. Moore, Eilon Sharon, Yaniv Lubling, Jonathan Widom, Eran Segal posted to dna-binding nucleosome by cabbagesofdoom on 2008-11-10 09:52:27 as along with 4 people and 1 group gdb cisevol djkt caseybrown JLab
	Annotating nucleic acid-binding function based on protein structure. [My Copy] J Mol Biol, Vol. 326, No. 4. (28 February 2003), pp. 1065-1079. by E. W. Stawiski, L. M. Gregoret, Y. Mandel-Gutfreund posted to dna-binding prediction by marti on 2008-10-30 15:46:34 as along with 1 person kaarsinogen
	Prediction of DNA-binding residues from sequence [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i347-353. by Yanay Ofran, Venkatesh Mysore, Burkhard Rost posted to dna-binding dna-protein prediction sequence-specific th_ibg by chrn on 2008-08-25 16:31:41 as along with 3 people aalibes kaarsinogen GustavoLacerda
	Target search of N sliding proteins on a DNA. [My Copy] Biophysical journal, Vol. 89, No. 2. (August 2005), pp. 895-902. by I. M. Sokolov, R. Metzler, K. Pant, M. C. Williams posted to dna-binding dna-protein by chrn on 2008-08-25 16:00:39 as
	A structural taxonomy of DNA-binding domains. [My Copy] Nature, Vol. 353, No. 6346. (24 October 1991), pp. 715-719. by S. C. Harrison posted to dna-binding dna-protein review th_ibg by chrn on 2008-07-06 13:12:14 as
	Structural Basis of Core Promoter Recognition in a Primitive Eukaryote [My Copy] Cell (November 2003), pp. 413-424. by M. A. Schumacher, A. O. T. Lau, P. J. Johnson posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 13:09:29 as
	Recognition of Nucleic Acid Bases and Base-pairs by Hydrogen Bonding to Amino Acid Side-chains [My Copy] Journal of Molecular Biology, Vol. 327, No. 4. (4 April 2003), pp. 781-796. by Alan C. Cheng, William W. Chen, Cynthia N. Fuhrmann, Alan D. Frankel posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 13:07:30 as
	Using structural motif templates to identify proteins with DNA binding function. [My Copy] Nucleic Acids Res, Vol. 31, No. 11. (1 June 2003), pp. 2811-2823. by S. Jones, J. A. Barker, I. Nobeli, J. M. Thornton posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 12:21:06 as along with 1 person medic0747
	Detecting DNA-binding helix-turn-helix structural motifs using sequence and structure information [My Copy] Nucleic Acids Research, Vol. 33, No. 7. (2005), pp. 2129-2140. by Marialuisa Pellegrini-Calace, Janet M. Thornton posted to dna-binding dna-protein helix-turn-helix hmm th_ibg by chrn on 2008-07-06 11:56:30 as
	The solution structure of ZNF593 from Homo sapiens reveals a zinc finger in a predominately unstructured protein [My Copy] Protein Sci, Vol. 17, No. 3. (1 March 2008), pp. 571-576. by Paulette L. Hayes, Betsy L. Lytle, Brian F. Volkman, Francis C. Peterson posted to dna-binding human nmr protein structure znf by neils on 2008-04-10 00:01:30 as
	The N-Terminal Basic Domain of the HIV-1 Matrix Protein Does Not Contain a Conventional Nuclear Localization Sequence But Is Required for DNA Binding and Protein Self-Association [My Copy] Biochemistry (29 January 2008) by A. C. Hearps, K. M. Wagstaff, S. C. Piller, D. A. Jans posted to dna-binding hiv localisation nls nuclear by neils on 2008-01-29 11:28:07 as
	Defining the sequence-recognition profile of DNA-binding molecules [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 4. (24 January 2006), pp. 867-872. by Christopher L. Warren, Natasha C. S. Kratochvil, Karl E. Hauschild, et al.Shane Foister, Mary L. Brezinski, Peter B. Dervan, George N. Phillips, Aseem Z. Ansari posted to dna-binding microarray molecular-biology-techniques transcription-factors by blobbybirdman on 2008-01-24 20:27:11 as along with 5 people and 1 group absterga indigoviolet emilyhare samal stsaft EisenLab
	A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors [My Copy] Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237. by Sebastian J. Maerkl, Stephen R. Quake posted to dna-binding microfluidics systems-biology transcription-factors by blobbybirdman on 2008-01-24 20:18:50 as along with 9 people and 2 groups absterga jjray dpollard emilyhare adepace aswin skoch3 emptyhb brant EisenLab Koch_Lab
	Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure [My Copy] Cell, Vol. 131, No. 3. (02 November 2007), pp. 530-543. by Rohit Joshi, Jonathan M. Passner, Remo Rohs, et al.Rinku Jain, Alona Sosinsky, Michael A. Crickmore, Vinitha Jacob, Aneel K. Aggarwal, Barry Honig, Richard S. Mann posted to binding-site-prediction dna-binding hox transcription-factors by blobbybirdman on 2008-01-24 20:01:55 as along with 4 people and 1 group vingron emptyhb cwbrown oelemento EisenLab
	Hox transcription factors and their elusive mammalian gene targets [My Copy] Heredity, Vol. aop, No. current. by T. Svingen, K. F. Tonissen, posted to binding-site-prediction dna-binding hox transcription-factors by blobbybirdman on 2008-01-24 19:45:50 as along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
	Kinetics of Protein-DNA Interaction: Facilitated Target Location in Sequence-Dependent Potential [My Copy] Biophysical Journal, Vol. 87, No. 6. (1 December 2004), pp. 4021-4035. by M. Slutsky posted to dna-binding kinetics by blobbybirdman to the group Myxo group on 2008-01-24 16:45:47 as along with 1 person emptyhb
	Design of a combinatorial DNA microarray for protein-DNA interaction studies [My Copy] BMC Bioinformatics, Vol. 7 (03 October 2006), 429. by Julian Mintseris, Michael B. Eisen posted to dna-binding hairpin microarray by stsaft on 2007-03-20 22:22:48 as along with 1 person djkt
	Correlated Evolutionary Pressure at Interacting Transcription Factors and DNA Response Elements Can Guide the Rational Engineering of DNA Binding Specificity [My Copy] Journal of Molecular Biology, Vol. 350, No. 3. (15 July 2005), pp. 402-415. by Michele Raviscioni, Peili Gu, Minawar Sattar, Austin J. Cooney, Olivier Lichtarge posted to dna-binding evolution factors transcription by chrn on 2006-12-13 21:01:49 as along with 4 people mdimmic kaarsinogen lulab cjeans
	Recognition of nucleic acid bases and base-pairs by hydrogen bonding to amino acid side-chains. [My Copy] J Mol Biol, Vol. 327, No. 4. (4 April 2003), pp. 781-796. by A. C. Cheng, W. W. Chen, C. N. Fuhrmann, A. D. Frankel posted to dna-binding protein-dna refs_peptides sequence-specific by chrn on 2006-12-09 16:36:19 as along with 1 person medic0747
	Differential sensitivities of transcription factor target genes underlie cell type-specific gene expression profiles. [My Copy] Proc Natl Acad Sci U S A (16 October 2006) by Kirby D D. Johnson, Shin-Il I. Kim, Emery H H. Bresnick posted to chromatin dna-binding by brant to the group EisenLab on 2006-10-26 01:27:28 as along with 1 person tuck
	Dpp-responsive Silencers Are Bound by a Trimeric Mad-Medea Complex [My Copy] J. Biol. Chem., Vol. 280, No. 43. (28 October 2005), pp. 36158-36164. by Sheng Gao, Janet Steffen, Allen Laughon posted to dna-binding smads by brant on 2006-08-31 06:17:11 as along with 1 group EisenLab
	DPP-responsive silencers contain overlapping mad binding sites. [My Copy] J Biol Chem (6 July 2006) by Sheng Gao, Allen Laughon posted to dna-binding smads by brant on 2006-08-31 06:15:51 as along with 1 person and 1 group indigoviolet EisenLab
	How do site-specific DNA-binding proteins find their targets? [My Copy] Nucl. Acids Res., Vol. 32, No. 10. (3 June 2004), pp. 3040-3052. by Stephen E. Halford, John F. Marko posted to binding dna-binding dna-protein site-specific by chrn on 2006-05-30 15:57:54 as along with 3 people and 1 group samjlord JintuRabha kaarsinogen moernerlab
	Regulation of RNA Polymerase II Transcription by Sequence-Specific DNA Binding Factors [My Copy] Cell, Vol. 116, No. 2. (23 January 2004), pp. 247-257. by J. T. Kadonaga posted to dna-binding factor review rnapolii sequence-specific transcription by xico on 2006-03-02 02:31:32 as along with 1 group WetBiology
	New types of conserved sequence domains in DNA-binding regions of homing endonucleases. [My Copy] Trends Biochem Sci, Vol. 28, No. 9. (September 2003), pp. 473-477. by E. Sitbon, S. Pietrokovski posted to dna-binding homing-endonuclease motifs msa server by Einat on 2006-01-05 09:17:56 as along with 1 group structural_bioinformatics
	Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif. [My Copy] J Mol Biol, Vol. 330, No. 1. (27 June 2003), pp. 43-55. by W. A. McLaughlin, H. M. Berman posted to dna-binding dna-protein helix-turn-helix by chrn on 2005-08-05 23:47:38 as

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dna-protein	9
th_ibg	6
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sequence-specific	4
transcription-factors	4
chromatin	3
factors	3
microarray	3
prediction	3
review	3
smads	3
sry-gene	3
bacillus	2
binding-site-prediction	2
clostridium	2
coli	2
escherichia	2
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firmicutes	2
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hairpin	2
helix-turn-helix	2
hmg-box	2
homing-endonuclease	2
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nucleosome	2
regulators	2
repertoire	2
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subtilis	2
transcriptional	2
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bayesian-network	1
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binding	1
chip	1
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evolution	1
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hmm	1
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localisation	1
microfluidics	1
molecular-biology-techniques	1
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protein-dna	1
protein-dna-interaction	1
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refs_peptides	1
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site-specific	1
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structure	1
systems-biology	1
thermodynamics	1
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