Tag dna-protein [29 articles] Export

Recent papers classified by the tag dna-protein.

	Mechanism of DNA substrate recognition by the mammalian DNA repair enzyme, Polynucleotide Kinase [My Copy] Nucl. Acids Res., Vol. 37, No. 18. (1 October 2009), pp. 6161-6173. by N. K. Bernstein, M. Hammel, R. S. Mani, et al.M. Weinfeld, M. Pelikan, J. A. Tainer, J. N. M. Glover posted to saxs reconstruction interactions dna-protein by spabit on 2009-10-20 17:09:28 as
	Protein-nucleic acid recognition: statistical analysis of atomic interactions and influence of DNA structure. [My Copy] Proteins, Vol. 61, No. 2. (1 November 2005), pp. 258-271. by D. Lejeune, N. Delsaux, B. Charloteaux, A. Thomas, R. Brasseur posted to analysis contact dna-protein protein-na rna-protein by svozil to the group Bioinformatics on 2009-03-30 10:03:28 as along with 3 people kaarsinogen aalibes medic0747
	Genome comparisons and analysis [My Copy] Current Opinion in Structural Biology, Vol. 13, No. 3. (June 2003), pp. 344-352. by S. Karlin posted to dna-protein th_ibg by chrn on 2008-12-21 21:09:30 as
	Spatial effects on the speed and reliability of protein-DNA search [My Copy] (11 Jun 2008) by Zeba Wunderlich, Leonid A. Mirny posted to dna-protein th_ibg by chrn on 2008-12-20 21:42:44 as
	In vivo evidence of alternative loop geometries in DNA-protein complexes [My Copy] (10 Feb 2006) by Leonor Saiz, Jose M. G. Vilar posted to dna-protein energy free th_ibg by chrn on 2008-12-20 21:07:30 as
	Identification of DNA-binding protein target sequences by physical effective energy functions. Free energy analysis of lambda repressor-DNA complexes [My Copy] (14 Dec 2007) by E. Moroni, M. Caselle, F. Fogolari posted to dna-protein energy free th_ibg by chrn on 2008-12-20 21:05:05 as
	DNA nano-mechanics: how proteins deform the double helix [My Copy] (17 Dec 2008) by Nils B. Becker, Ralf Everaers posted to dna-protein elasticity th_ibg by chrn on 2008-12-20 21:04:16 as
	Description of non-specific DNA-protein interaction and facilitated diffusion with a dynamical model [My Copy] (19 Nov 2008) by Ana-Maria Florescu, Marc Joyeux posted to dna-protein non-specific th_ibg by chrn on 2008-12-20 21:02:44 as
	Energetics of Protein-DNA Interactions [My Copy] (30 Nov 2006) by Jason E. Donald, William W. Chen, Eugene I. Shakhnovich posted to dna-protein th_ibg by chrn on 2008-12-20 20:15:19 as
	Multilevel Deconstruction of the In Vivo Behavior of Looped DNA-Protein Complexes [My Copy] (18 Apr 2007) by Leonor Saiz, Jose M. G. Vilar posted to dna-protein th_ibg toread by chrn on 2008-12-20 20:02:11 as
	Modeling transcription factor binding events to DNA using a random walker/jumper representation on a 1D/2D lattice with different affinity sites [My Copy] (9 Aug 2007) by Vahid Rezania, Jack Tuszynski, Michael Hendzel posted to dna-protein th_ibg toread by chrn on 2008-12-20 19:50:38 as along with 1 person cottrell
	DBD-Hunter: a knowledge-based method for the prediction of DNA-protein interactions [My Copy] Nucl. Acids Res., Vol. 36, No. 12. (1 July 2008), pp. 3978-3992. by Mu Gao, Jeffrey Skolnick posted to dna-protein by yoonk on 2008-10-25 00:14:07 as along with 5 people operon aramesh2 aalibes reyez suffer3
	Prediction of DNA-binding residues from sequence [My Copy] Bioinformatics, Vol. 23, No. 13. (1 July 2007), pp. i347-353. by Yanay Ofran, Venkatesh Mysore, Burkhard Rost posted to dna-binding dna-protein prediction sequence-specific th_ibg by chrn on 2008-08-25 16:31:41 as along with 3 people aalibes kaarsinogen GustavoLacerda
	Target search of N sliding proteins on a DNA. [My Copy] Biophysical journal, Vol. 89, No. 2. (August 2005), pp. 895-902. by I. M. Sokolov, R. Metzler, K. Pant, M. C. Williams posted to dna-binding dna-protein by chrn on 2008-08-25 16:00:39 as
	Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli. [My Copy] Nature biotechnology, Vol. 16, No. 6. (June 1998), pp. 566-571. by S. Tavazoie, G. M. Church posted to dna-protein by yoonk on 2008-07-31 19:19:21 as along with 1 person cambray
	A structural taxonomy of DNA-binding domains. [My Copy] Nature, Vol. 353, No. 6346. (24 October 1991), pp. 715-719. by S. C. Harrison posted to dna-binding dna-protein review th_ibg by chrn on 2008-07-06 13:12:14 as
	Structural Basis of Core Promoter Recognition in a Primitive Eukaryote [My Copy] Cell (November 2003), pp. 413-424. by M. A. Schumacher, A. O. T. Lau, P. J. Johnson posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 13:09:29 as
	Recognition of Nucleic Acid Bases and Base-pairs by Hydrogen Bonding to Amino Acid Side-chains [My Copy] Journal of Molecular Biology, Vol. 327, No. 4. (4 April 2003), pp. 781-796. by Alan C. Cheng, William W. Chen, Cynthia N. Fuhrmann, Alan D. Frankel posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 13:07:30 as
	Using structural motif templates to identify proteins with DNA binding function. [My Copy] Nucleic Acids Res, Vol. 31, No. 11. (1 June 2003), pp. 2811-2823. by S. Jones, J. A. Barker, I. Nobeli, J. M. Thornton posted to dna-binding dna-protein th_ibg by chrn on 2008-07-06 12:21:06 as along with 1 person medic0747
	Detecting DNA-binding helix-turn-helix structural motifs using sequence and structure information [My Copy] Nucleic Acids Research, Vol. 33, No. 7. (2005), pp. 2129-2140. by Marialuisa Pellegrini-Calace, Janet M. Thornton posted to dna-binding dna-protein helix-turn-helix hmm th_ibg by chrn on 2008-07-06 11:56:30 as
	Transcriptional control of noise in gene expression [My Copy] Proceedings of the National Academy of Sciences (19 March 2008), 0707904105. by Alvaro Sanchez, Jane Kondev posted to binding biophysics dna-protein equilibrium gene by lambda on 2008-04-12 05:24:55 as along with 7 people jjray balabu margaritis ddcttrl austin sbottani inesdesantiago
	On the specificity of DNA-protein interactions. [My Copy] Proc Natl Acad Sci U S A, Vol. 83, No. 6. (March 1986), pp. 1608-1612. by P. H. von Hippel, O. G. Berg posted to binding biophysics dna-protein equilibrium gene by lambda on 2008-04-12 05:22:32 as along with 3 people and 2 groups jjray cisevol stsaft TranscriptionalRegulationWithThermodynamicModels cis-regulatory-evolution
	Interacting models of cooperative gene regulation. [My Copy] Proc Natl Acad Sci U S A, Vol. 101, No. 46. (16 November 2004), pp. 16234-16239. by D. Das, N. Banerjee, M. Q. Zhang posted to binding biophysics dna-protein equilibrium gene regulation by lambda on 2008-04-12 05:13:08 as along with 4 people roys misonneh jfr Ao_Li2007
	General transfer matrix formalism to calculate DNA-protein-drug binding in gene regulation: application to OR operator of phage lambda [My Copy] Nucl. Acids Res., Vol. 35, No. 11. (28 June 2007), e80. by Vladimir B. Teif posted to binding biophysics dna-protein equilibrium gene lambda lattice models phage regulation by lambda on 2008-04-12 05:05:19 as
	Molecular dynamics simulations and thermodynamics analysis of DNA-drug complexes. Minor groove binding between 4',6-diamidino-2-phenylindole and DNA duplexes in solution. [My Copy] J Am Chem Soc, Vol. 125, No. 7. (19 February 2003), pp. 1759-1769. by N. Spacková, T. E. Cheatham, F. Ryjácek, et al.F. Lankas, L. Van Meervelt, P. Hobza, J. Sponer posted to dna-protein md by lillekatt on 2007-11-25 10:47:02 as
	How do site-specific DNA-binding proteins find their targets? [My Copy] Nucl. Acids Res., Vol. 32, No. 10. (3 June 2004), pp. 3040-3052. by Stephen E. Halford, John F. Marko posted to binding dna-binding dna-protein site-specific by chrn on 2006-05-30 15:57:54 as along with 3 people and 1 group samjlord JintuRabha kaarsinogen moernerlab
	[Application of chromatin immunoprecipitation assay in deciphering DNA-protein interactions] [My Copy] Yi Chuan, Vol. 27, No. 5. (September 2005), pp. 801-807. by C. Y. Wang, J. D. Shi, Y. Zhu, J. Zhang posted to chip dna-protein by royalzhang to the group Computational-Genomics on 2005-11-08 08:03:06 as
	Statistical models for discerning protein structures containing the DNA-binding helix-turn-helix motif. [My Copy] J Mol Biol, Vol. 330, No. 1. (27 June 2003), pp. 43-55. by W. A. McLaughlin, H. M. Berman posted to dna-binding dna-protein helix-turn-helix by chrn on 2005-08-05 23:47:38 as
	Protein-DNA interactions in the T4 dNTP synthetase complex dependent on gene 32 single-stranded DNA-binding protein [My Copy] Molecular Microbiology, Vol. 55, No. 5. (March 2005), pp. 1502-1514. by Juhyun Kim, Linda J. Wheeler, Rongkun Shen, Christopher K. Mathews posted to dna-protein by lillekatt on 2005-05-25 14:33:18 as

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th_ibg	15
dna-binding	9
binding	5
biophysics	4
equilibrium	4
gene	4
chip	2
energy	2
free	2
helix-turn-helix	2
regulation	2
toread	2
analysis	1
clamp-loader	1
contact	1
elasticity	1
hmm	1
interactions	1
lambda	1
lattice	1
md	1
models	1
non-specific	1
phage	1
prediction	1
protein-na	1
reconstruction	1
review	1
rna-protein	1
saxs	1
sequence-specific	1
site-specific	1

Tag dna-protein [29 articles] Export

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