Tag dna-protein_interaction [34 articles] Export

Recent papers classified by the tag dna-protein_interaction.

	A multiparameter network reveals extensive divergence between C. elegans bHLH transcription factors. [My Copy] Cell, Vol. 138, No. 2. (23 July 2009), pp. 314-327. by Christian A. Grove, Federico De Masi, M. Inmaculada Barrasa, et al.Daniel E. Newburger, Mark J. Alkema, Martha L. Bulyk, Albertha J. Walhout posted to dna-protein_interaction by emptyhb on 2009-07-29 20:17:05 as along with 2 people roys freddemasi
	Backup in gene regulatory networks explains differences between binding and knockout results [My Copy] Molecular Systems Biology, Vol. 5 (16 June 2009) by Anthony Gitter, Zehava Siegfried, Michael Klutstein, et al.Oriol Fornes, Baldo Oliva, Itamar Simon, Ziv Bar-Joseph posted to dna-protein_interaction gene_buffering gene_deletion gene_duplication gene_expression gene_redundant gene_regulation network redundancy by biomcgary on 2009-07-17 17:11:20 as along with 6 people pablocarb cassj roys kiekyon jjray TRHvidsten
	Prediction of TF target sites based on atomistic models of protein-DNA complexes [My Copy] BMC Bioinformatics, Vol. 9 (16 October 2008), 436. by Vladimir E. Angarica, Abel G. Perez, Ana T. Vasconcelos, Julio Collado-Vides, Bruno Contreras-Moreira posted to dna-protein_interaction drosophila by emptyhb on 2009-05-18 13:01:31 as along with 2 people lptolik aalibes
	Diversity and complexity in DNA recognition by transcription factors. [My Copy] Science (New York, N.Y.), Vol. 324, No. 5935. (26 June 2009), pp. 1720-1723. by Gwenael Badis, Michael F. Berger, Anthony A. Philippakis, et al.Shaheynoor Talukder, Andrew R. Gehrke, Savina A. Jaeger, Esther T. Chan, Genita Metzler, Anastasia Vedenko, Xiaoyu Chen, Hanna Kuznetsov, Chi-Fong F. Wang, David Coburn, Daniel E. Newburger, Quaid Morris, Timothy R. Hughes, Martha L. Bulyk posted to dna-protein_interaction by emptyhb on 2009-05-15 23:11:55 as along with 24 people and 1 group bsamal sebastien_vigneau nklee sconlan isimpson jbhiatt daforerog absterga mingzhi galka8_diploma fenghezi TRHvidsten ilyashl cambray rpatward tibbitts dpollard siebert JustinCrocker burak aalibes dipenps roys tmmurali RockmanLab
	Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. [My Copy] Nature methods, Vol. 6, No. 4. (22 April 2009), pp. 283-289. by Jay R. Hesselberth, Xiaoyu Chen, Zhihong Zhang, et al.Peter J. Sabo, Richard Sandstrom, Alex P. Reynolds, Robert E. Thurman, Shane Neph, Michael S. Kuehn, William S. Noble, Stanley Fields, John A. Stamatoyannopoulos posted to dna-protein_interaction experimental_method by emptyhb on 2009-05-01 13:58:41 as along with 8 people absterga inesdesantiago kmdaily humburg roys coela fpattyn jbhiatt
	Microarray Profiling of Phage-Display Selections for Rapid Mapping of Transcription Factor–DNA Interactions [My Copy] PLoS Genet, Vol. 5, No. 4. (10 April 2009), e1000449. by Gordon Freckleton, Soyeon I. Lippman, James R. Broach, Saeed Tavazoie posted to dna-protein_interaction experimental_method by emptyhb on 2009-04-28 15:10:01 as
	Activation of Wingless Targets Requires Bipartite Recognition of DNA by TCF [My Copy] Current Biology, Vol. 18, No. 23. (09 December 2008), pp. 1877-1881. by M. Chang, J. Chang, A. Gangopadhyay, A. Shearer, K. Cadigan posted to cis_regulatory_elements dna-protein_interaction molecular_biology by emptyhb on 2009-03-05 23:36:08 as
	Analysis of combinatorial cis-regulation in synthetic and genomic promoters [My Copy] Nature, Vol. 457, No. 7226. (23 November 2008), pp. 215-218. by Jason Gertz, Eric D. Siggia, Barak A. Cohen posted to transcriptional_regulation modeling_gene_network dna-protein_interaction cis_regulatory_variation by emptyhb on 2009-01-10 00:52:38 as along with 17 people and 4 groups Vincent_Rouilly pcarbo TRHvidsten rpatward jbhiatt lusk maximilianh roys dpollard druvus sebastien_vigneau pengchy sandersl djkt siebert isimpson xianjun TranscriptionalRegulationWithThermodynamicModels RockmanLab cis-regulatory-evolution microbiology_nijmegen
	Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences. [My Copy] Cell, Vol. 133, No. 7. (27 June 2008), pp. 1266-1276. by M. F. Berger, G. Badis, A. R. Gehrke, et al.S. Talukder, A. A. Philippakis, L. Peña-Castillo, T. M. Alleyne, S. Mnaimneh, O. B. Botvinnik, E. T. Chan, F. Khalid, W. Zhang, D. Newburger, S. A. Jaeger, Q. D. Morris, M. L. Bulyk, T. R. Hughes posted to dna-protein_interaction transcriptional_regulation by emptyhb on 2008-12-10 19:21:11 as along with 5 people and 1 group cambray thegoose2 tharris isimpson icq242500260 C. elegans / WormBase
	Functional Specificity of a Hox Protein Mediated by the Recognition of Minor Groove Structure [My Copy] Cell, Vol. 131, No. 3. (02 November 2007), pp. 530-543. by Rohit Joshi, Jonathan M. Passner, Remo Rohs, et al.Rinku Jain, Alona Sosinsky, Michael A. Crickmore, Vinitha Jacob, Aneel K. Aggarwal, Barry Honig, Richard S. Mann posted to dna-protein_interaction drosophila trans_elements transcriptional_regulation by emptyhb on 2008-11-10 17:41:11 as along with 4 people and 1 group vingron cwbrown blobbybirdman oelemento EisenLab
	Rapid restructuring of bicoid-dependent hunchback promoters within and between Dipteran species: implications for molecular coevolution. [My Copy] Evol Dev, Vol. 3, No. 6. (c 2001), pp. 397-407. by A. P. McGregor, P. J. Shaw, J. M. Hancock, et al.D. Bopp, M. Hediger, N. S. Wratten, G. A. Dover posted to dna-protein_interaction drosophila transcriptional_regulation cis_regulatory_variation by emptyhb on 2008-11-09 17:20:07 as along with 1 person and 1 group cisevol cis-regulatory-evolution
	A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system [My Copy] Nucl. Acids Res. (10 March 2008), gkn048. by Marcus B. Noyes, Xiangdong Meng, Atsuya Wakabayashi, Saurabh Sinha, Michael H. Brodsky, Scot A. Wolfe posted to dna-protein_interaction drosophila motif_searching by emptyhb on 2008-11-07 00:29:37 as along with 1 person brant
	Analysis of homeodomain specificities allows the family-wide prediction of preferred recognition sites. [My Copy] Cell, Vol. 133, No. 7. (27 June 2008), pp. 1277-1289. by M. B. Noyes, R. G. Christensen, A. Wakabayashi, G. D. Stormo, M. H. Brodsky, S. A. Wolfe posted to dna-protein_interaction motif_searching by emptyhb on 2008-11-06 20:53:33 as along with 6 people austin_mcdonald lusk maximilianh_otx maximilianh isimpson icq242500260
	Evolution of an insect-specific GROUCHO-interaction motif in the ENGRAILED selector protein [My Copy] Evolution & Development, Vol. 10, No. 5. (October 2008), pp. 537-545. by Hittinger, Chris Todd, Carroll, B. Sean posted to dna-protein_interaction transcriptional_regulation by emptyhb on 2008-10-23 14:14:55 as
	DNA binding sites: representation and discovery. [My Copy] Bioinformatics (Oxford, England), Vol. 16, No. 1. (January 2000), pp. 16-23. by G. D. Stormo posted to cis_regulatory_elements dna-protein_interaction by emptyhb on 2008-10-06 23:47:08 as along with 9 people and 1 group yylin Stew isimpson kaarsinogen mbj dquest lusk ezralanglois xili03 Bioinformatics - CRUK
	Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters. [My Copy] Journal of molecular biology, Vol. 193, No. 4. (20 February 1987), pp. 723-750. by O. G. Berg, P. H. von Hippel posted to cis_regulatory_elements dna-protein_interaction by emptyhb on 2008-10-06 23:39:58 as along with 9 people and 2 groups mox jjray indigoviolet lusk discreteonyxorb cisevol Ema brant zambujo EisenLab cis-regulatory-evolution
	Quantitative specificity of the Mnt repressor 1 [My Copy] Journal of Molecular Biology, Vol. 271, No. 2. (15 August 1997), pp. 178-194. by Dana S. Fields, Yi-Yuan He, Ahmed Y. Al-Uzri, Gary D. Stormo posted to dna-protein_interaction by emptyhb on 2008-09-11 16:33:12 as along with 1 person absterga
	Insights into Protein–DNA Interactions through Structure Network Analysis [My Copy] PLoS Comput Biol, Vol. 4, No. 9. (2008), e1000170. by R. Sathyapriya, M. S. Vijayabaskar, Saraswathi Vishveshwara posted to dna-protein_interaction by emptyhb on 2008-09-11 15:41:33 as along with 9 people and 1 group TRHvidsten svozil Zephyrus Ema aalibes AbnerCYH Totobox zwang hmk Roswell Cancer Crosstalk
	A Feature-Based Approach to Modeling Protein–DNA Interactions [My Copy] PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000154. by Eilon Sharon, Shai Lubliner, Eran Segal posted to dna-protein_interaction transcriptional_regulation by emptyhb on 2008-08-25 15:29:39 as along with 5 people ptrobajo dakelley Stew zwang aalibes
	Rationalization of gene regulation by a eukaryotic transcription factor: calculation of regulatory region occupancy from predicted binding affinities. [My Copy] Journal of molecular biology, Vol. 323, No. 1. (11 October 2002), pp. 1-8. by X. Liu, N. D. Clarke posted to dna-protein_interaction cis_regulatory_variation by emptyhb on 2008-08-11 21:13:28 as
	Genome-wide Prediction of Mammalian Enhancers Based on Analysis of Transcription-Factor Binding Affinity [My Copy] Cell, Vol. 124, No. 1. (13 January 2006), pp. 47-59. by O. Hallikas, K. Palin, N. Sinjushina, et al.R. Rautiainen, J. Partanen, E. Ukkonen, J. Taipale posted to dna-protein_interaction experimental_method motif_searching by emptyhb on 2008-07-26 16:58:02 as along with 16 people and 5 groups absterga xingxu cisstem Terkko kaarsinogen tuck brant xwbcn dchughes nickluscombe olympos cabbagezs karfunkel maximilianh heliopais oelemento Bioinformatics EisenLab G4ID EBI-regulation Genetics-of-Gambling
	Nearest-neighbor non-additivity versus long-range non-additivity in TATA-box structure and its implications for TBP-binding mechanism [My Copy] Nucl. Acids Res., Vol. 35, No. 13. (26 July 2007), pp. 4409-4419. by Hana Faiger, Marina Ivanchenko, Tali E. Haran posted to dna-protein_interaction by emptyhb on 2008-07-14 15:14:21 as along with 1 person nklee
	Coordination of a Transcriptional Switch by HMGI(Y) Acetylation [My Copy] Science, Vol. 293, No. 5532. (10 August 2001), pp. 1133-1136. by Nikhil Munshi, Theodora Agalioti, Stavros Lomvardas, Menie Merika, Guoying Chen, Dimitris Thanos posted to dna-protein_interaction transcriptional_regulation cis_regulatory_variation by emptyhb on 2008-07-03 23:30:10 as
	An Atomic Model of the Interferon-[beta] Enhanceosome [My Copy] Cell, Vol. 129, No. 6. (15 June 2007), pp. 1111-1123. by Daniel Panne, Tom Maniatis, Stephen C. Harrison posted to dna-protein_interaction transcriptional_regulation cis_regulatory_variation by emptyhb on 2008-07-03 23:26:56 as along with 1 person rpatward
	A comparison of in vivo and in vitro DNA-binding specificities suggests a new model for homeoprotein DNA binding in Drosophila embryos. [My Copy] The EMBO journal, Vol. 18, No. 6. (15 March 1999), pp. 1598-1608. by A. Carr, M. D. Biggin posted to dna-protein_interaction in-vivo_binding_sites by emptyhb on 2008-04-10 00:46:32 as
	Additivity in protein-DNA interactions: how good an approximation is it? [My Copy] Nucleic Acids Res, Vol. 30, No. 20. (15 October 2002), pp. 4442-4451. by P. V. Benos, M. L. Bulyk, G. D. Stormo posted to biophysics dna-protein_interaction by emptyhb on 2008-04-07 06:59:56 as along with 4 people aalibes erdos medic0747 yevishere
	Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays [My Copy] Nature Genetics, Vol. 36, No. 12. (14 November 2004), 1331. by Sonali Mukherjee, Michael F. Berger, Ghil Jona, et al.Xun S. Wang, Dale Muzzey, Michael Snyder, Richard A. Young, Martha L. Bulyk posted to biophysics dna-protein_interaction in-vivo_binding_sites by emptyhb on 2008-04-05 23:00:57 as along with 5 people johncumbers olympos nklee yevishere kristallreiner
	Quantitative specificity of the Mnt repressor. [My Copy] Journal of molecular biology, Vol. 271, No. 2. (15 August 1997), pp. 178-194. by D. S. Fields, Y. He, A. Y. Al-Uzri, G. D. Stormo posted to biophysics cis_regulatory_elements dna-protein_interaction by emptyhb on 2008-04-05 19:56:01 as
	Precise physical models of protein-DNA interaction from high-throughput data [My Copy] PNAS, Vol. 104, No. 2. (9 January 2007), pp. 501-506. by Justin B. Kinney, Gasper Tkacik, Curtis G. Callan posted to cis_regulatory_elements dna-protein_interaction motif_searching statistical_method by emptyhb on 2008-03-20 15:56:33 as along with 2 people aalibes zwang
	Short-range repression permits multiple enhancers to function autonomously within a complex promoter. [My Copy] Genes Dev., Vol. 8, No. 15. (1 August 1994), pp. 1829-1838. by S. Gray, P. Szymanski, M. Levine posted to dna-protein_interaction drosophila even-skipped_enhancer pattern_formation transcriptional_regulation by emptyhb on 2008-02-28 17:42:19 as
	A Biological Interpretation of Transient Anomalous Subdiffusion. II. Reaction Kinetics [My Copy] Biophys. J., Vol. 94, No. 3. (1 February 2008), pp. 760-771. by Michael J. Saxton posted to biophysics dna-protein_interaction by emptyhb on 2008-02-24 19:51:20 as
	Predicting expression patterns from regulatory sequence in Drosophila segmentation [My Copy] Nature, Vol. 451, No. 7178. (02 January 2008), pp. 535-540. by Eran Segal, Tali Raveh-Sadka, Mark Schroeder, Ulrich Unnerstall, Ulrike Gaul posted to development dna-protein_interaction gene_expression modeling predictive_biology transcription_factor_binding_site by biomcgary on 2008-01-30 20:52:52 as along with 19 people and 2 groups TRHvidsten daveGerrard koller dlmace ptrobajo isimpson dakelley tmmurali eckart_bindewald djkt bootsy idonaldson roys emptyhb pkharchenko meiklej jrest tresch siebert BergmanLab TranscriptionalRegulationWithThermodynamicModels
	An overview of the structures of protein-DNA complexes [My Copy] Genome Biology, Vol. 1, No. 1. (2000) by Nicholas M. Luscombe, Susan E. Austin, Helen M. Berman, Janet M. Thornton posted to cis_regulatory_elements dna-protein_interaction review by emptyhb on 2008-01-01 20:29:41 as along with 5 people and 1 group agustinarce svozil kaarsinogen indigoviolet medic0747 EisenLab
	Genome-Wide Mapping of in Vivo Protein-DNA Interactions [My Copy] Science, Vol. 316, No. 5830. (8 June 2007), pp. 1497-1502. by David S. Johnson, Ali Mortazavi, Richard M. Myers, Barbara Wold posted to biotech chipseq dna-protein_interaction sequencing by biomcgary on 2007-06-13 20:17:23 as along with 24 people and 5 groups oannes daforerog tonamswish ewilban1 aprasad jo_davies aalibes balicea andersbj JeremyZucker aswin kengg giovanni cjeans ghattem zwang epigenetics george_g cabbagezs Jporci blobbybirdman caseybrown emptyhb dquest Bioinformatics microRNA Marcotte_Lab UH - Computational Biology Myxo group

Note: You may cite this page as: http://www.citeulike.org/tag/dna-protein_interaction

transcriptional_regulation	9
cis_regulatory_elements	6
cis_regulatory_variation	5
drosophila	5
biophysics	4
motif_searching	4
experimental_method	3
biotech	2
chipseq	2
gene_expression	2
in-vivo_binding_sites	2
sequencing	2
development	1
even-skipped_enhancer	1
gene_buffering	1
gene_deletion	1
gene_duplication	1
gene_redundant	1
gene_regulation	1
modeling	1
modeling_gene_network	1
molecular_biology	1
network	1
pattern_formation	1
predictive_biology	1
redundancy	1
review	1
statistical_method	1
trans_elements	1
transcription_factor_binding_site	1

Tag dna-protein_interaction [34 articles] Export

Related Tags