Tag domain [at least 200 articles] Export

Recent papers classified by the tag domain.

	Ontologies for supporting negotiation in e-commerce [My Copy] Engineering Applications of Artificial Intelligence, Vol. 18, No. 2. (March 2005), pp. 223-236. by V. Tamma, S. Phelps, I. Dickinson, M. Wooldridge posted to specific ontology negotiation language ecommerce dsl domain by cblock on 2009-11-22 19:44:30 as
	Comparative genomics and structural biology of the molecular innovations of eukaryotes [My Copy] Current Opinion in Structural Biology In Nucleic acids/Sequences and topology - Anna Marie Pyle and Jonathan Widom/Nick V Grishin and Sarah A Teichmann, Vol. 16, No. 3. (June 2006), pp. 409-419. by L. Aravind, L. Iyer, E. Koonin posted to protein ph fold evolution eukaryote domain architecture by robfsouza on 2009-11-19 20:53:54 as
	Detection of new protein domains using co-occurrence: application to Plasmodium falciparum [My Copy] Bioinformatics, Vol. 25, No. 23. (1 December 2009), pp. 3077-3083. by Nicolas Terrapon, Olivier Gascuel, Eric Marechal, Laurent Breehelin posted to prediction_methods infectious_disease domain_identification domain by kshameer on 2009-11-18 04:04:02 as along with 1 person and 1 group ppgardne Journal picks
	HSP-HMMER: a tool for protein domain identification on a large scale [My Copy] In SAC '09: Proceedings of the 2009 ACM symposium on Applied Computing (2009), pp. 766-770. by Bhanu Rekapalli, Christian Halloy, Igor B. Zhulin posted to hmmer hmm domain detection 13-nov-09 by robertrentzsch to the group Orengo Group Journal Picks on 2009-11-13 11:17:38 as
	Spin domains in ground-state Bose-Einstein condensates [My Copy] Nature, Vol. 396, No. 6709. (26 November 1998), pp. 345-348. by J. Stenger, S. Inouye, D. M. Stamper-Kurn, H. J. Miesner, A. P. Chikkatur, W. Ketterle posted to spinor_bec experiment domain by ssjjll on 2009-11-09 23:29:11 as
	A novel scheme for domain-transfer problem in the context of sentiment analysis [My Copy] In CIKM '07: Proceedings of the sixteenth ACM conference on Conference on information and knowledge management (2007), pp. 979-982. by Songbo Tan, Gaowei Wu, Huifeng Tang, Xueqi Cheng posted to transfer sentiment domain analysis adaptation by pprett on 2009-11-09 09:37:04 as
	Modeling the evolution of protein domain architectures using maximum parsimony. [My Copy] Journal of molecular biology, Vol. 366, No. 1. (9 February 2007), pp. 307-315. by Jessica H. Fong, Lewis Y. Geer, Anna R. Panchenko, Stephen H. Bryant posted to tree these phylogeny evolution domain by calderonv on 2009-11-05 13:29:44 as along with 9 people and 3 groups martainn wiedenhoeft jameswasmuth icases marcius tny choonpeng redelings zwang BioinfoCIPF SGU-CIPF TNT
	Domain tree-based analysis of protein architecture evolution. [My Copy] Molecular biology and evolution, Vol. 25, No. 2. (1 February 2008), pp. 254-264. by Kristoffer Forslund, Anna Henricson, Volker Hollich, Erik L. Sonnhammer posted to tree these evolution domain by calderonv on 2009-11-05 13:26:14 as along with 5 people martainn jameswasmuth cjeans vinithepooh gulkur
	Clustering of protein domains for functional and evolutionary studies. [My Copy] BMC bioinformatics, Vol. 10, No. 1. (2009), 335. by Pavle Goldstein, Jurica Zucko, Dusica Vujaklija, et al.Anita Krisko, Daslav Hranueli, Paul F. Long, Catherine Etchebest, Bojan Basrak, John Cullum posted to evolution domain clustering analysis by kshameer on 2009-11-01 08:09:41 as along with 5 people and 2 groups sillitoe druvus ppgardne zwang phoenixzxl Orengo Group Journal Picks Journal picks
	Generic algorithm to predict the speed of translational elongation: implications for protein biogenesis. [My Copy] PloS one, Vol. 4, No. 4. (2009) by Gong Zhang, Zoya Ignatova posted to usage ribosome domain codon boundaries attenuation by saunders on 2009-10-26 12:13:55 as along with 1 person Vincent_Rouilly
	A theory of learning from different domains [My Copy] Machine Learning by Shai Ben-David, John Blitzer, Koby Crammer, Alex Kulesza, Fernando Pereira, Jennifer Vaughan posted to transfer theory shift learning domain dataset adaptation by pprett on 2009-10-26 11:16:14 as along with 1 person bedo
	Message-passing algorithms for the prediction of protein domain interactions from protein-protein interaction data [My Copy] Bioinformatics, Vol. 24, No. 18. (15 September 2008), pp. 2064-2070. by Mudassar Iqbal, Alex A. Freitas, Colin G. Johnson, Massimo Vergassola posted to networks network linkprediciton domain doe by carlk on 2009-10-24 00:06:57 as along with 6 people grahamc afon zwang reyez iris_2001 phoenixzxl
	Domain motions of hyaluronan lyase underlying processive hyaluronan translocation. [My Copy] Proteins, Vol. 76, No. 1. (July 2009), pp. 30-46. by Harshad V. Joshi, Mark J. Jedrzejas, Bert L. de Groot posted to simulation pca motions molecular dynamics domain by harshad12 on 2009-10-21 19:37:16 as
	Sentiment analysis of blogs by combining lexical knowledge with text classification [My Copy] In KDD '09: Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining (2009), pp. 1275-1284. by Prem Melville, Wojciech Gryc, Richard D. Lawrence posted to sentiment pooling multinomials ml knowledge domain blogs analysis by pprett on 2009-10-21 09:47:24 as along with 1 person nliu82
	Mapping of the physical interaction between the intracellular domains of an inwardly rectifying potassium channel, Kir6.2. [My Copy] The Journal of biological chemistry, Vol. 274, No. 47. (19 November 1999), pp. 33393-33397. by S. J. Tucker, F. M. Ashcroft posted to kir62 katp domain by dimka on 2009-10-19 06:17:46 as
	HMM-based databases in InterPro [My Copy] Brief Bioinform, Vol. 3, No. 3. (1 January 2002), pp. 236-245. by Alex Bateman, Daniel H. Haft posted to signature protein pattern motif interproscan hmm domain database databank bank annotation by nlapalu on 2009-10-09 16:46:40 as
	Applications of InterPro in protein annotation and genome analysis [My Copy] Brief Bioinform, Vol. 3, No. 3. (1 January 2002), pp. 285-295. by Margaret Biswas, John F. O'Rourke, Evelyn Camon, et al.Gill Fraser, Alexander Kanapin, Youla Karavidopoulou, Paul Kersey, Evgenia Kriventseva, Virginie Mittard, Nicola Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler posted to signature prosite prediction pattern motif interproscan functional domain database databank annotation by nlapalu on 2009-10-09 16:43:47 as
	ProRule: a new database containing functional and structural information on PROSITE profiles [My Copy] Bioinformatics, Vol. 21, No. 21. (1 November 2005), pp. 4060-4066. by Christian J. A. Sigrist, Edouard De Castro, Petra S. Langendijk-Genevaux, Virginie Le Saux, Amos Bairoch, Nicolas Hulo posted to signature protein prosite pattern motif functional domain database databank bank by nlapalu on 2009-10-09 16:41:31 as
	PROSITE: A documented database using patterns and profiles as motif descriptors [My Copy] Brief Bioinform, Vol. 3, No. 3. (1 January 2002), pp. 265-274. by Christian J. A. Sigrist, Lorenzo Cerutti, Nicolas Hulo, et al.Alexandre Gattiker, Laurent Falquet, Marco Pagni, Amos Bairoch, Philipp Bucher posted to protein prosite pattern motif functional domain database databank bank by nlapalu on 2009-10-09 16:37:11 as along with 4 people jwm siebertm shung jteyra
	A conserved element that stabilizes the group II intron active site [My Copy] RNA, Vol. 14, No. 6. (June 2008), pp. 1048-1056. by Olga Fedorova, Anna M. Pyle posted to intron groupii domain d3 by lukzky on 2009-10-09 15:58:29 as
	Domains 2 and 3 Interact to Form Critical Elements of the Group II Intron Active Site [My Copy] Journal of Molecular Biology, Vol. 330, No. 2. (04 July 2003), pp. 197-209. by Olga Fedorova, Therese Mitros, Anna M. Pyle posted to j23 intron groupii domain d3 d2 by lukzky on 2009-10-09 14:50:39 as
	The 20 years of PROSITE [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D245-249. by Nicolas Hulo, Amos Bairoch, Virginie Bulliard, et al.Lorenzo Cerutti, Beatrice A. Cuche, Edouard de Castro, Corinne Lachaize, Petra S. Langendijk-Genevaux, Christian J. A. Sigrist posted to signature prosite motif domain database databank bank by nlapalu on 2009-10-07 17:47:20 as along with 8 people and 1 group gwallau Zoltan_Barczikay fbristow ojabado reyez dullhunk hplatero Evangelia LabDros
	Group II introns deleted for multiple substructures retain self-splicing activity. [My Copy] Mol. Cell. Biol., Vol. 12, No. 5. (1 May 1992), pp. 1950-1958. by J. L. Koch, S. C. Boulanger, S. D. Dib-Hajj, S. K. Hebbar, P. S. Perlman posted to intron groupii domain deltetion by lukzky on 2009-10-07 11:53:16 as
	Are Protein Domains Modules of Lateral Genetic Transfer? [My Copy] PLoS ONE, Vol. 4, No. 2. (20 February 2009), e4524. by Cheong X. Chan, Aaron E. Darling, Robert G. Beiko, Mark A. Ragan posted to proteome modules domain by druvus on 2009-10-06 15:35:51 as along with 3 people chancx AaronDarling zwang
	The architectural organization and mechanistic function of group II intron structural elements [My Copy] Current Opinion in Structural Biology, Vol. 8, No. 3. (June 1998), pp. 301-308. by P. Qin posted to splicing review intron groupii domain by lukzky on 2009-10-06 12:43:21 as
	Probabilistically induced domain decomposition methods for elliptic boundary-value problems [My Copy] Journal of Computational Physics, Vol. 210, No. 2. (10 December 2005), pp. 421-438. by J. Acebron, M. Busico, P. Lanucara, R. Spigler posted to problem probabilistic grid elliptical domain decomposition boundary algorithm by michaelbussmann on 2009-10-06 11:03:21 as
	A New Domain Decomposition Approach Suited for Grid Computing [My Copy] Applied Parallel Computing. State of the Art in Scientific Computing (2009), pp. 744-753. by Juan Acebrón, Raúl Durán, Rafael Rico, Renato Spigler posted to probability grid domain decomposition computing algorithm by michaelbussmann on 2009-10-06 10:58:47 as
	Knowledge transfer via multiple model local structure mapping [My Copy] In KDD '08: Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining (2008), pp. 283-291. by Jing Gao, Wei Fan, Jing Jiang, Jiawei Han posted to transfer text learning domain classification adaptation by pprett on 2009-10-03 14:13:45 as along with 1 person amargoli
	A Frequency-Domain Multi-Band Matched-Filter Approach to Passive Diver Detection [My Copy] Signals, Systems and Computers, 2007. ACSSC 2007. Conference Record of the Forty-First Asilomar Conference on (11 April 2008), pp. 1252-1256. by Kil W. Chung, Hongbin Li, A. Sutin posted to passive matched frequency filter domain detection acoustics by ellist on 2009-09-29 18:17:31 as
	Extracting discriminative concepts for domain adaptation in text mining [My Copy] In KDD '09: Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining (2009), pp. 179-188. by Bo Chen, Wai Lam, Ivor Tsang, Tak L. Wong posted to shared scl representation domain adaptation by pprett on 2009-09-25 20:22:23 as
	Intra-document structural frequency features for semi-supervised domain adaptation [My Copy] In CIKM '08: Proceeding of the 17th ACM conference on Information and knowledge management (2008), pp. 1291-1300. by Andrew Arnold, William W. Cohen posted to protein names information extraction domain adaptation by pprett on 2009-09-23 17:12:40 as
	Resurrecting the Ancestral Enzymatic Role of a Modulatory Subunit [My Copy] Journal of Biological Chemistry, Vol. 280, No. 11. (18 March 2005), pp. 10189-10195. by Miguel A. Ballicora, Jennifer R. Dubay, Claire H. Devillers, Jack Preiss posted to reconstruction inactive evolution enzyme domain character ancestral by robfsouza on 2009-09-21 16:50:34 as along with 2 people and 1 group matzke nknii TCR_Signaling
	The catalytic domains of thiamine triphosphatase and CyaB-like adenylyl cyclase define a novel superfamily of domains that bind organic phosphates [My Copy] BMC Genomics, Vol. 3, No. 1. (2002), 33. by Lakshminarayan Iyer, L. Aravind posted to superfamily protein inactive fold enzyme domain aravind by robfsouza on 2009-09-18 23:09:50 as
	The domains of death: evolution of the apoptosis machinery [My Copy] Trends in Biochemical Sciences, Vol. 24, No. 2. (1 February 1999), pp. 47-53. by L. Aravind posted to inactive enzyme domain aravind apoptosis by robfsouza on 2009-09-18 23:06:14 as
	The many faces of the helix-turn-helix domain: Transcription regulation and beyond⋆ [My Copy] FEMS Microbiology Reviews, Vol. 29, No. 2. (2005), pp. 231-262. by L. Aravind, Vivek Anantharaman, Santhanam Balaji, Mohan M. Babu, Lakshminarayan M. Iyer posted to transcription protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:22:35 as
	Themis is a member of a new metazoan gene family and is required for the completion of thymocyte positive selection [My Copy] Nature Immunology, Vol. 10, No. 8. (13 July 2009), pp. 831-839. by Andy L. Johnson, L. Aravind, Natalia Shulzhenko, et al.Andre Morgun, See-Young Choi, Tanya L. Crockford, Teresa Lambe, Heather Domaschenz, Edyta M. Kucharska, Lixin Zheng, Carola G. Vinuesa, Michael J. Lenardo, Christopher C. Goodnow, Richard J. Cornall, Ronald H. Schwartz posted to protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:05:45 as along with 1 person leliavski
	Small but versatile: the extraordinary functional and structural diversity of the beta-grasp fold [My Copy] Biology Direct, Vol. 2, No. 1. (02 July 2007), 18. by A. Maxwell Burroughs, S. Balaji, Lakshminarayan Iyer, L. Aravind posted to protein inactive fold evolution enzyme domain aravind by robfsouza on 2009-09-18 22:00:49 as
	Analysis of DBC1 and its homologs suggests a potential mechanism for regulation of sirtuin domain deacetylases by NAD metabolites. [My Copy] Cell cycle (Georgetown, Tex.), Vol. 7, No. 10. (15 May 2008), pp. 1467-1472. by Vivek Anantharaman, L. Aravind posted to protein inactive fold evolution enzyme domain aravind acetylation by robfsouza on 2009-09-18 21:38:46 as
	Structure of the Staphylococcus aureus AgrA LytTR domain bound to DNA reveals a beta fold with an unusual mode of binding. [My Copy] Structure (London, England : 1993), Vol. 16, No. 5. (May 2008), pp. 727-735. by David J. Sidote, Christopher M. Barbieri, Ti Wu, Ann M. Stock posted to structure staphylococcus lyttr domain dna binding aureus agra by Winzer on 2009-09-11 15:33:13 as
	Structural domain-domain interactions: Assessment and comparison with protein-protein interaction data to improve the interactome. [My Copy] Proteins, Vol. 9999, No. 9999. (5 August 2009), NA. by C. Prieto, J. De Las Rivas posted to structure protein interaction domain by zwang on 2009-09-07 07:16:44 as along with 2 people higueruelo phoenixzxl
	The NYN domains: novel predicted RNAses with a PIN domain-like fold. [My Copy] RNA biology, Vol. 3, No. 1. (r 2006), pp. 18-27. by Vivek Anantharaman, L. Aravind posted to superfamily rnase rna replication recombination fold family evolution domain aravind by robfsouza on 2009-09-04 17:08:43 as
	Universal features in the genome-level evolution of protein domains. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), R12. by Marco Cosentino Lagomarsino, Alessandro L. Sellerio, Philip D. Heijning, Bruno Bassetti posted to protein genome evolution domain by zwang on 2009-09-04 08:53:22 as along with 7 people docv phoenixzxl djkt idoerg VGreiff grahamc pawelszczesny
	Instance Weighting for Domain Adaptation in NLP [My Copy] In ACL (2007) by Jing Jiang, Chengxiang Zhai posted to weighting nlp instance domain adaptation by pprett on 2009-09-02 15:25:19 as
	A two-stage approach to domain adaptation for statistical classifiers [My Copy] In CIKM '07: Proceedings of the sixteenth ACM conference on Conference on information and knowledge management (2007), pp. 401-410. by Jing Jiang, Chengxiang Zhai posted to two-stage nlp domain adaptation by pprett on 2009-09-02 15:24:43 as along with 1 person amargoli
	Adaptation of Maximum Entropy Capitalizer: Little Data Can Help a Lot [My Copy] In Proceedings of EMNLP 2004 (July 2004), pp. 285-292. by Ciprian Chelba, Alex Acero edited by Dekang Lin, Dekai Wu posted to regularization maximum_entropy domain adaptation by pprett on 2009-09-02 08:47:33 as along with 2 people alwright1 amargoli
	Comparative analysis and unification of domain-domain interaction networks [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3020-3025. by Patrik Bjorkholm, Erik L. L. Sonnhammer posted to network interaction domain by zwang on 2009-09-01 10:12:53 as along with 3 people and 1 group molnet-mna ilhem phoenixzxl Orengo Group Journal Picks
	Simplified Normal Mode Analysis of Conformational Transitions in DNA-dependent Polymerases: the Elastic Network Model [My Copy] Journal of Molecular Biology, Vol. 320, No. 5. (26 July 2002), pp. 1011-1024. by Marc Delarue, Yves-Henri Sanejouand posted to transition polymerases open normal movements modes domain closed by sanejouand on 2009-08-31 17:35:00 as
	Classification and evolutionary history of the single-strand annealing proteins, RecT, Redbeta, ERF and RAD52 [My Copy] BMC Genomics, Vol. 3, No. 1. (2002), 8. by Lakshminarayan Iyer, Eugene Koonin, L. Aravind posted to strand single protein family evolution domain dna classification chromatin borrelia binding aravind by robfsouza on 2009-08-29 00:36:09 as
	The Anabaena sensory rhodopsin transducer defines a novel superfamily of prokaryotic small-molecule binding domains [My Copy] Biology Direct, Vol. 4, No. 1. (14 August 2009), 25. by Robson De Souza, Lakshminarayan Iyer, L. Aravind posted to rhodopsin protein family evolution domain bacteria aravind by robfsouza on 2009-08-26 21:13:49 as
	Breaking chirality in nonequilibrium systems [My Copy] Physical Review Letters, Vol. 65, No. 11. (Sep 1990), pp. 1352-1355. by P. Coullet, J. Lega, B. Houchmanzadeh, J. Lajzerowicz posted to waves wall kink faraday domain by timcnz on 2009-08-26 16:18:31 as

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protein	143
evolution	102
structure	71
database	62
interaction	58
prediction	46
wall	24
binding	23
network	23
adaptation	22
analysis	19
aravind	19
bioinformatics	17
hmm	17
proteome	16
sequence	16
classification	15
protein-protein	15
algorithm	14
motif	14
ppi	14
review	14
enzyme	13
family	13
data	11
dna	11
fold	11
interactions	11
membrane	11
method	11
ontology	11
watermarking	11
chromatin	10
design	10
experiment	10
identification	10
inactive	10
knowledge	10
superfamily	10
annotation	9
as	9
boson	9
dsl	9
model	9
spinor	9
transfer	9
automatic	8
continuous	8
frequency	8
function	8
genome	8
image	8
kinase	8
resistivity	8
ring	8
alignment	7
architecture	7
catalytic	7
current	7
detection	7
distribution	7
interface	7
language	7
learning	7
methods	7
pattern	7
signature	7
software	7
specific	7
theory	7
transcription	7
virus	7
bioclim	6
coding	6
coevolution	6
decomposition	6
distribution_models	6
domains	6
duplication	6
geometry	6
influenza	6
information	6
intron	6
linear	6
maxent	6
motifs	6
specificity	6
system	6
theory_of_mind	6
time	6
transform	6
transforms	6
user	6
bank	5
discrete	5
example	5
functional	5
p-loop	5
partition	5
prosite	5

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