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Tag domains [141 articles]

Recent papers classified by the tag domains.
  • Evolution of a novel family of nuclear receptors with members that each contain two DNA binding domains
    BMC Evolutionary Biology, Vol. 7 (23 February 2007), 27.
    by Wenjie Wu, Edward G Niles, Hirohisa Hirai, Philip T Loverde
    posted to binding dna domains novel nuclear receptor subfamily two by wenjiewu on 2007-10-10 07:32:30 as ***** along with 1 person ajaymalik
  • IgTM: an algorithm to predict transmembrane domains and topology in proteins
    BMC Bioinformatics, Vol. 9 (10 September 2008), 367.
    by Piedachu Peris, Damian Lopez, Marcelino Campos
    posted to transmembrane protein domains by trevinor on 2008-09-11 23:26:37 as **
  • Genetic Diversity and Selection at the Plasmodium vivax Apical Membrane Antigen-1 (PvAMA-1) Locus in a Sri Lankan Population
    Molecular Biology and Evolution, Vol. 24, No. 4. (April 2007), pp. 939-947.
    by Gunasekera, M Anusha, Wickramarachchi, Thilan, Neafsey, E Daniel, Ganguli, Ishani, Perera, Lakshman, Premaratne, H Prasad, Hartl, Daniel, Handunnetti, M Shiroma, Udagama-Randeniya, V Preethi, Wirth, F Dyann
    posted to bioinformatics comparative computational domains malaria plasmodium vivax by svdate on 2007-12-20 16:41:39 as **
  • Practical Strategies for Discovering Regulatory DNA Sequence Motifs
    PLoS Computational Biology, Vol. 2, No. 4. (1 April 2006), e36.
    by Kenzie D Macisaac, Ernest Fraenkel
    posted to discovery domains motifs patterns by svdate on 2007-12-14 15:26:57 as ***** along with 8 people and 2 groups nuin bryankr ana chad_davis balicea hggr GustavoLacerda kristallreiner structural_bioinformatics Bioinformatics
  • Plasma membrane-associated proteins are clustered into islands attached to the cytoskeleton.
    Proc Natl Acad Sci U S A (4 December 2006)
    by Björn F F Lillemeier, Janet R R Pfeiffer, Zurab Surviladze, Bridget S S Wilson, Mark M M Davis
    posted to domains rafts by softsimu on 2008-06-26 19:37:51 as ** along with 1 person lenkei
  • Raft Partitioning and Dynamic Behavior of Human Placental Alkaline Phosphatase in Giant Unilamellar Vesicles
    Biochemistry, Vol. 44, No. 20. (24 May 2005), pp. 7479-7489.
    by N Kahya, DA Brown, P Schwille
    posted to domains guv rafts by softsimu on 2008-06-26 19:33:51 as **
  • Coupled composition-deformation phase-field method for multicomponent lipid membranes
    Physical Review E (Statistical, Nonlinear, and Soft Matter Physics), Vol. 76, No. 1. (2007)
    by Chloe M Funkhouser, Francisco J Solis, K Thornton
    posted to domains rafts by softsimu on 2008-06-26 19:36:56 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Modulated phases in multicomponent fluid membranes
    Physical Review E, Vol. 60, No. 4. (1 October 1999), 4610.
    by Sunil PB Kumar, G Gompper, R Lipowsky
    posted to domains rafts by softsimu on 2008-06-26 19:36:35 as **
  • Lipid domains as obstacles for lateral diffusion in supported bilayers probed at different time and length scales by two-dimensional exchange and field gradient solid state NMR
    Physical Review E, Vol. 55, No. 4. (1 April 1997), 4512.
    by C Dolainsky, P Karakatsanis, TM Bayerl
    posted to diffusion domains membranes by softsimu on 2008-06-23 21:46:22 as **
  • Nonequilibrium Raftlike Membrane Domains under Continuous Recycling
    Physical Review Letters, Vol. 95, No. 16. (2005)
    by Matthew S Turner, Pierre Sens, Nicholas D Socci
    posted to domains rafts by softsimu on 2008-06-26 19:36:00 as **
  • Organization in Lipid Membranes Containing Cholesterol
    Physical Review Letters, Vol. 89, No. 26. (December 2002), 268101.
    by Sarah L Veatch, Sarah L Keller
    posted to cholesterol domains rafts by softsimu on 2008-06-26 19:33:31 as **
  • Time-Resolved Fluorescence and Fourier Transform Infrared Spectroscopic Investigations of Lateral Packing Defects and Superlattice Domains in Compositionally Uniform Cholesterol/Phosphatidylcholine Bilayers
    Biophys. J., Vol. 84, No. 6. (1 June 2003), pp. 3777-3791.
    by Brian Cannon, Garrett Heath, Juyang Huang, Pentti Somerharju, Jorma A Virtanen, Kwan H Cheng
    posted to membranes domains by softsimu on 2008-10-10 19:00:20 as **
  • Coupling Field Theory with Mesoscopic Dynamical Simulations of Multicomponent Lipid Bilayers
    Biophys. J., Vol. 87, No. 5. (1 November 2004), pp. 3242-3263.
    by Liam J Mcwhirter, Gary Ayton, Gregory A Voth
    posted to domains rafts by softsimu on 2008-06-26 19:36:19 as **
  • SCOP: a structural classification of proteins database for the investigation of sequences and structures.
    J Mol Biol, Vol. 247, No. 4. (7 April 1995), pp. 536-540.
    by AG Murzin, SE Brenner, T Hubbard, C Chothia
    posted to classification database domains protein scop structure by siebertm on 2007-04-23 22:42:45 as read along with 10 people pjcite dimka chrn chad_davis j3xucite sriram_s aengisch massivemayhem cjeans sim82
  • The ASTRAL compendium in 2004.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by JM Chandonia, G Hon, NS Walker, L Lo Conte, P Koehl, M Levitt, SE Brenner
    posted to astral database domains protein scop sequences by siebertm on 2007-05-18 20:35:03 as ** along with 6 people chad_davis sriram_s aengisch rabio saunders reyez
  • The ASTRAL compendium for protein structure and sequence analysis.
    Nucleic Acids Res, Vol. 28, No. 1. (1 January 2000), pp. 254-256.
    by SE Brenner, P Koehl, M Levitt
    posted to astral database domains protein scop sequences by siebertm on 2007-05-18 20:34:08 as ** along with 3 people rabio cjeans gulkur
  • SMART 5: domains in the context of genomes and networks.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by I Letunic, RR Copley, B Pils, S Pinkert, J Schultz, P Bork
    posted to database domains hmm interpro protein smart by siebertm on 2007-05-22 12:15:21 as * along with 1 person chad_davis
  • Default Reasoning over Domains and Concept Hierarchies
    by P Hitzler
    posted to closure-structures default-reasoning domains hierarchy inference information-system kb logical-information-system logics lp nonmonotonic by scis0000001 on 2007-02-01 17:20:31 as **
  • Domains for Computation in Mathematics, Physics and Exact Real Arithmetic
    The Bulletin of Symbolic Logic, Vol. 3, No. 4. (1997), pp. 401-452.
    by Abbas Edalat
    posted to banach-space computation computational-epistemology domain-theory domains metric-space topological-space by scis0000001 on 2006-10-17 09:21:30 as **
  • Domains of Higher-Dimensional Automata
    (1993), pp. 293-307.
    by Eric Goubault
    posted to hda domains by scis0000001 on 2007-02-03 15:29:37 as **
  • Functionally important segments in proteins dissected using Gene Ontology and geometric clustering of peptide fragments
    Genome Biology, Vol. 9 (10 March 2008), R52.
    by Manikandan Karuppasamy, Debnath Pal, Ramakumar Suryanarayanarao, Nathan E Brener, Sitharama S Iyengar, Guna Seetharaman
    posted to domains evolution p-value by Schmidtc on 2008-03-30 16:40:25 as ** along with 1 person stef_lise
  • Why do proteins divide into domains? Insights from lattice model simulations.
    Biomacromolecules, Vol. 8, No. 11. (November 2007), pp. 3519-3524.
    by A Rutkowska, A Kolinski
    posted to domains folding hp lattice by saunders on 2007-11-22 16:21:59 as **
  • Evolution of protein domain promiscuity in eukaryotes
    Genome Res. (29 January 2008), gr.6943508.
    by Malay K Basu, Liran Carmel, Igor B Rogozin, Eugene V Koonin
    posted to domains by saket on 2008-06-05 22:55:16 as *** along with 6 people michC neils grahamc zwang carlk dchughes
  • Reuse of structural domain-domain interactions in protein networks
    BMC Bioinformatics, Vol. 8 (18 July 2007), 259.
    by Benjamin Schuster-Bockler, Alex Bateman
    posted to domains interactions networks by saket on 2008-06-01 04:05:16 as read along with 3 people chad_davis zwang carlk
  • Predicting domain-domain interactions using a parsimony approach
    Genome Biology, Vol. 7 (09 November 2006), R104.
    by Katia S Guimaraes, Raja Jothi, Elena Zotenko, Teresa M Przytycka
    posted to domains interactions ml by saket on 2008-06-01 04:06:30 as read along with 3 people cerca phoenixzxl carlk
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to domains interactions networks structures by saket on 2008-06-01 04:08:10 as read along with 18 people and 2 groups cerca bicko lfriedl chad_davis Einat tny choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili structural_bioinformatics kdl
  • Modeling linguistically complex business domains
    (2004)
    by S Hoppenbrouwers, A Bleeker, H Proper
    posted to business domains linguistic modeling by pilho on 2006-04-28 03:28:03 as **
  • Problem-Solving Knowledge Mining from Users’ Actions in an Intelligent Tutoring System
    Advances in Artificial Intelligence (2007), pp. 393-404.
    by Roger Nkambou, Mephu, Olivier Couturier, Philippe Fournier-Viger
    posted to tutoring systems procedural mining knowledge knotwledge intelligent ill-defined educational e-learning domains domain data by philfv on 2008-10-07 18:07:43 as *****
  • Membrane binding domains.
    Biochimica et biophysica acta, Vol. 1761, No. 8. (August 2006), pp. 805-811.
    by JH Hurley
    posted to binding domains membrane by paulschlesinger on 2008-07-11 00:01:34 as **
  • Peptide Probes for Protein Transmembrane Domains
    ACS Chem. Biol. (6 June 2008)
    by Peter F Slivka, Johnny Wong, Gregory A Caputo, Hang Yin
    posted to domains proteins review slivka08pdf tm transmembrane by paulschlesinger on 2008-06-07 00:36:44 as **
  • Proteins and cholesterol-rich domains
    Biochimica et Biophysica Acta (BBA) - Biomembranes, Vol. In Press, Accepted Manuscript
    by Richard M Epand
    posted to crac domain domains lipid review by paulschlesinger on 2008-04-10 23:57:57 as **
  • Domain-induced budding in buckling membranes.
    Eur Phys J E Soft Matter, Vol. 23, No. 4. (August 2007), pp. 367-374.
    by A Minami, K Yamada
    posted to curvature domains helfrich membrane by paulschlesinger on 2008-03-09 01:03:35 as **
  • Computational Models of Tandem Src Homology 2 Domain Interactions and Application to Phosphoinositide 3-Kinase
    J. Biol. Chem., Vol. 283, No. 12. (21 March 2008), pp. 7338-7345.
    by Dipak Barua, James R Faeder, Jason M Haugh
    posted to domains src tandum by paulschlesinger on 2008-03-20 17:55:42 as **
  • A topologically related singularity suggests a maximum preferred size for protein domains
    Proteins: Structure, Function, and Bioinformatics, Vol. 66, No. 3. (2007), pp. 621-629.
    by Joseph P Zbilut, Gek H Chua, Arun Krishnan, Cecilia Bossa, Kristian Rother, Charles L Webber, Alessandro Giuliani
    posted to domains for maximum protein size by Pao-Yang on 2007-11-29 10:34:00 as ** along with 2 people choonpeng cdeane
  • Global chromatin domain organization of the Drosophila genome.
    PLoS genetics, Vol. 4, No. 3. (March 2008)
    by E de Wit, U Braunschweig, F Greil, HJ Bussemaker, B van Steensel
    posted to domains gene_expression by oelemento on 2008-08-07 19:35:28 as ** along with 1 person maximilianh
  • The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e239.
    by Del, Pablo Carbonell
    posted to domains modular-architecture network protein protein-network protein-protein by niallhaslam on 2007-12-13 12:36:45 as **** along with 9 people bicko chad_davis choonpeng grahamc cjeans zwang biehl marti carlk
  • A partially structured region of a largely unstructured protein, Plasmodium falciparum merozoite surface protein 2 (MSP2), forms amyloid-like fibrils.
    Journal of peptide science : an official publication of the European Peptide Society, Vol. 13, No. 12. (December 2007), pp. 839-848.
    by X Yang, CG Adda, DW Keizer, VJ Murphy, MM Rizkalla, MA Perugini, DC Jackson, RF Anders, RS Norton
    posted to disorder domains modular-architecture partially-structured structure-prediction by niallhaslam on 2008-04-02 11:23:35 as **
  • On the detection of functionally coherent groups of protein domains with an extension to protein annotation
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by William Mclaughlin, Ken Chen, Tingjun Hou, Wei Wang
    posted to domains interactions protein-protein by niallhaslam on 2007-10-16 09:56:03 as ***
  • TOPDOM: database of domains and motifs with conservative location in transmembrane proteins.
    Bioinformatics (Oxford, England) (23 April 2008)
    by Gábor E E Tusnády, Lajos Kalmár, Hédi Hegyi, Péter Tompa, István Simon
    posted to disorder domains modular-architecture protein-design structure-prediction by niallhaslam on 2008-06-25 09:09:42 as *** along with 3 people cabbagesofdoom gulkur jyuh
  • Molecular Basis for Evolving Modularity in the Yeast Protein Interaction Network
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e226.
    by Ariel Fernández
    posted to domains evolution modular-architecture protein protein-protein by niallhaslam on 2007-11-15 12:49:49 as *** along with 4 people tomhebbron zwang Ema phoenixzxl
  • PURE: a webserver for the prediction of domains in unassigned regions in proteins
    BMC Bioinformatics, Vol. 9 (14 June 2008), 281.
    by Chilamakuri CS Reddy, Shameer Khader, Bernard O Offmann, Ramanthan Sowdhamini
    posted to domains modular-architecture protein-design structure-prediction by niallhaslam on 2008-06-25 09:19:12 as ** along with 1 person neils
  • The modular organization of domain structures: insights into protein-protein binding
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 October 2007), e239.eor.
    by Del, Pablo Carbonell
    posted to domains modular-architecture protein protein-protein structure-prediction by niallhaslam on 2007-11-15 12:50:59 as ***
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to domains evolution modular-architecture protein-protein by niallhaslam on 2007-11-15 12:50:25 as *** along with 11 people and 1 group balicea skhadar zwang sobolevnrm hpaces mingzhi Ema phoenixzxl penpen926 friendpine pradiptaray baker-group
  • Mobile Agent security using Proxy-agents and Trusted Domains
    (july 2002), pp. 81-83.
    by Nikola Mitrovic, Unai Arronategui
    posted to adaptive agents context devices domains mobile proxy security by mitrovic on 2008-03-12 12:41:22 as *****
  • Detecting Coevolution in and among Protein Domains
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e211.
    by Chen-Hsiang Yeang, David Haussler
    posted to coevolution domains protein by mingzhi on 2007-11-05 03:58:00 as ** along with 1 person penpen926
  • The Relationship Between Domain Duplication and Recombination
    Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365.
    by Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal
    posted to domains evolution by mdimon on 2007-09-29 23:38:20 as ** along with 5 people and 4 groups ana marcius tny cjeans martainn structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Probing of ferroelectric surface and bulk domains in RMnO3 (R=Y, Ho) by second harmonic generation
    Physical Review B, Vol. 66, No. 14. (October 2002), 144102.
    by M Fiebig, D Fröhlich, Th Lottermoser, M Maat
    posted to ymno3 shg rmno3 manganites homno3 ferroelectricity experimental domains by manganite on 2008-09-16 19:47:08 as *****
  • Magnetoelectric behavior of domain walls in multiferroic HoMnO[sub 3]
    Physical Review B (Condensed Matter and Materials Physics), Vol. 70, No. 22. (2004)
    by Thomas Lottermoser, Manfred Fiebig
    posted to rmno3 multiferroics manganites homno3 experimental domains domain-walls antiferromagnetism by manganite on 2008-09-16 19:41:28 as *****
  • Structure and Interaction of Antiferromagnetic Domain Walls in Hexagonal YMnO3
    Physical Review Letters, Vol. 90, No. 17. (2 May 2003), 177204.
    by AV Goltsev, RV Pisarev, Th Lottermoser, M Fiebig
    posted to ymno3 theory rmno3 manganites magnetism domains domain-walls antiferromagnetism by manganite on 2008-09-16 19:43:16 as *****
  • Observation of coupled magnetic and electric domains
    Nature, Vol. 419, No. 6909. (24 October 2002), pp. 818-820.
    by M Fiebig, Th Lottermoser, D Frohlich, AV Goltsev, RV Pisarev
    posted to ymno3 shg rmno3 multiferroics manganites ferroelectricity domains antiferromagnetism by manganite on 2008-09-16 10:40:09 as *****
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