Tag domains [at least 200 articles] Export

Recent papers classified by the tag domains.

	DOMINO: a database of domain-peptide interactions. [My Copy] Nucleic acids research, Vol. 35, No. Database issue. (January 2007) by Arnaud Ceol, Andrew Chatr-aryamontri, Elena Santonico, Roberto Sacco, Luisa Castagnoli, Gianni Cesareni posted to ppi domains database by aceol on 2009-11-20 10:00:00 as along with 2 people guhjy Evangelia
	Evaluation of different domain-based methods in protein interaction prediction [My Copy] Biochemical and Biophysical Research Communications (02 October 2009) by Hung X. Ta, Liisa Holm posted to interactome domains bioinformatics by molnet-mna on 2009-11-18 11:34:07 as
	Comparative analysis and unification of domain-domain interaction networks [My Copy] Bioinformatics, Vol. 25, No. 22. (15 November 2009), pp. 3020-3025. by Patrik Bjorkholm, Erik L. L. Sonnhammer posted to networks domains bioinformatics by molnet-mna on 2009-11-17 12:48:57 as along with 3 people and 1 group ilhem zwang phoenixzxl Orengo Group Journal Picks
	Diffusion, Transport, and Cell Membrane Organization Investigated by Imaging Fluorescence Cross-Correlation Spectroscopy [My Copy] Vol. 97, No. 9. (4 November 2009), pp. 2630-2639. by Jagadish Sankaran, Manoj Manna, Lin Guo, Rachel Kraut, Thorsten Wohland posted to memrane domains by coombs on 2009-11-06 22:50:38 as
	Anisotropy of Antiferromagnetic 180[degree] Domains in LiCoPO[sub 4] and LiNiPO[sub 4] [My Copy] Physical Review Letters, Vol. 101, No. 15. (2008), 157202. by Bas B. Van Aken, J. P. Rivera, H. Schmid, M. Fiebig posted to linipo4 licopo4 domains antiferromagnetism by Elkue on 2009-10-08 12:52:05 as
	Quantification of the Elevated Rate of Domain Rearrangements in Metazoa [My Copy] Journal of Molecular Biology, Vol. 372, No. 5. (05 October 2007), pp. 1337-1348. by Diana Ekman, Åsa K. Björklund, Arne Elofsson posted to domains by jameswasmuth on 2009-10-07 20:25:32 as along with 3 people cjeans kluck gulkur
	Domain Rearrangements in Protein Evolution [My Copy] Journal of Molecular Biology, Vol. 353, No. 4. (04 November 2005), pp. 911-923. by Åsa K. Björklund, Diana Ekman, Sara Light, Johannes Frey-Skött, Arne Elofsson posted to domains by jameswasmuth on 2009-10-07 20:20:59 as along with 3 people wiedenhoeft swp09 tny
	Birth and death of protein domains: A simple model of evolution explains power law behavior [My Copy] BMC Evolutionary Biology, Vol. 2, No. 1. (2002), 18. by Georgy Karev, Yuri Wolf, Andrey Rzhetsky, Faina Berezovskaya, Eugene Koonin posted to domains by jameswasmuth on 2009-10-07 20:13:18 as along with 2 people knaseanka martainn
	Using the Structure-function Linkage Database to characterize functional domains in enzymes. [My Copy] Current protocols in bioinformatics / editoral board, Andreas D. Baxevanis ... [et al.], Vol. Chapter 2 (March 2006) by Shoshana Brown, Patricia Babbitt posted to sfld funfam domains by NickFurnham on 2009-08-13 13:55:05 as
	Morphology and interaction between lipid domains [My Copy] Proceedings of the National Academy of Sciences, Vol. 106, No. 32. (11 August 2009), pp. 13301-13306. by Tristan S. Ursell, William S. Klug, Rob Phillips posted to ursell09pdf morphology model mechanical lipid domains by paulschlesinger on 2009-08-12 01:43:55 as along with 2 people sobolevnrm coolger
	Assembly of the Tc1 and mariner transposition initiation complexes depends on the origins of their transposase DNA binding domains [My Copy] Genetica, Vol. 130, No. 2. (1 June 2007), pp. 105-120. by Brillet Benjamin, Bigot Yves, Augé-Gouillou Corinne posted to binding dna domains mariner origins tc1 transposases by gwallau on 2009-07-16 14:07:10 as
	The ITR binding domain of the Mariner Mos-1 transposase [My Copy] Molecular Genetics and Genomics, Vol. 265, No. 1. (26 March 2001), pp. 58-65. by C. Augé-Gouillou, M. H. Hamelin, M. V. Demattei, G. Periquet, Y. Bigot posted to domains itrs mariner mos1 by gwallau on 2009-07-13 20:28:38 as
	Mobile Agent security using Proxy-agents and Trusted Domains [My Copy] In Second International Workshop on Security of Mobile Multiagent Systems (SEMAS 2002) (july 2002), pp. 81-83. by Nikola Mitrovic, Unai Arronategui posted to agent agents domains multi proxy security trusted by network02 on 2009-07-13 16:39:56 as along with 1 person mitrovic
	Topical categories of domains [My Copy] Mathematical. Structures in Comp. Sci., Vol. 9, No. 5. (1999), pp. 569-616. by Steven Vickers posted to algebraicity algebras category-theory constructivity domain-theory domains fol geometricity locales stone-duality topological-spaces topos-theory toposes by Scis0000002 on 2009-05-27 11:14:06 as
	The HSA domain binds nuclear actin-related proteins to regulate chromatin-remodeling ATPases [My Copy] Nature Structural & Molecular Biology, Vol. 15, No. 5. (13 April 2008), pp. 469-476. by Heather Szerlong, Kaede Hinata, Ramya Viswanathan, Hediye Erdjument-Bromage, Paul Tempst, Bradley R. Cairns posted to arp domains hsa by swp09 on 2009-05-22 09:57:40 as
	Substrate specificity of protein kinases and computational prediction of substrates. [My Copy] Biochim Biophys Acta, Vol. 1754, No. 1-2. (30 December 2005), pp. 200-209. by B. Kobe, T. Kampmann, J. K. Forwood, P. Listwan, R. I. Brinkworth posted to domains kinase post-defense predictions specificity by kgutwin on 2009-05-20 07:06:52 as
	The protein kinase family: conserved features and deduced phylogeny of the catalytic domains. [My Copy] Science, Vol. 241, No. 4861. (1 July 1988), pp. 42-52. by S. K. Hanks, A. M. Quinn, T. Hunter posted to domains kinase post-defense by kgutwin on 2009-05-20 07:01:32 as along with 2 people dragonrez jnk1
	The evolving model of calmodulin structure, function and activation. [My Copy] Structure (London, England : 1993), Vol. 3, No. 1. (15 January 1995), pp. 7-11. by B. E. Finn, S. Forsén posted to calmodulin domains ef-hand post-defense by kgutwin on 2009-05-20 07:00:49 as
	Structure and dynamic regulation of Src-family kinases. [My Copy] Cellular and molecular life sciences : CMLS, Vol. 65, No. 19. (October 2008), pp. 3058-3073. by J. R. Engen, T. E. Wales, J. M. Hochrein, et al.M. A. Meyn, S. Banu Ozkan, I. Bahar, T. E. Smithgall posted to domains post-defense sh2 sh3 by kgutwin on 2009-05-20 06:09:19 as along with 1 person guhjy
	Characterization of domain-peptide interaction interface: a generic structure-based model to decipher the binding specificity of SH3 domains [My Copy] Mol Cell Proteomics (20 November 2008), M800450-MCP200. by Tingjun Hou, Zheng Xu, Wei Zhang, et al.William A. Mclaughlin, David A. Case, Yang Xu, Wei Wang posted to domains post-defense predictions sh3 by kgutwin on 2009-05-20 05:41:36 as along with 2 people phoenixzxl zwang
	Structure Based Prediction of the S. cerevisiae SH3-Ligand Interactions. [My Copy] Journal of molecular biology (23 March 2009) by Gregorio Fernandez-Ballester, Pedro Beltrao, Jose Manuel M. Gonzalez, et al.Young-Hwa H. Song, Matthias Wilmanns, Alfonso Valencia, Luis Serrano posted to domains ism post-defense predictions sh3 by kgutwin on 2009-05-20 05:41:04 as along with 1 person neils
	Prediction of phosphotyrosine signaling networks using a scoring matrix-assisted ligand identification approach. [My Copy] Nucleic acids research, Vol. 36, No. 10. (June 2008), pp. 3263-3273. by L. Li, C. Wu, H. Huang, K. Zhang, J. Gan, S. S. Li posted to domains post-defense predictions sh2 by kgutwin on 2009-05-20 05:40:08 as along with 1 person hryk
	A Specificity Map for the PDZ Domain Family [My Copy] PLoS Biology, Vol. 6, No. 9. (1 September 2008), e239. by Raffi Tonikian, Yingnan Zhang, Stephen L. Sazinsky, et al.Bridget Currell, Jung-Hua Yeh, Boris Reva, Heike A. Held, Brent A. Appleton, Marie Evangelista, Yan Wu, Xiaofeng Xin, Andrew C. Chan, Somasekar Seshagiri, Laurence A. Lasky, Chris Sander, Charles Boone, Gary D. Bader, Sachdev S. Sidhu posted to domains pdz post-defense predictions by kgutwin on 2009-05-20 05:37:28 as along with 6 people and 3 groups balicea grahamc markchen zwang cabbagesofdoom barry structural_bioinformatics McCammon Bioinformatics
	Quantification of PDZ domain specificity, prediction of ligand affinity and rational design of super-binding peptides. [My Copy] Journal of molecular biology, Vol. 343, No. 3. (22 October 2004), pp. 703-718. by U. Wiedemann, P. Boisguerin, R. Leben, et al.D. Leitner, G. Krause, K. Moelling, R. Volkmer-Engert, H. Oschkinat posted to domains pdz post-defense predictions spot-array by kgutwin on 2009-05-20 05:37:05 as
	PDZ domain proteins: Scaffolds for signaling complexes [My Copy] Current Biology, Vol. 7, No. 12. (01 December 1997), pp. R770-R773. by Rama Ranganathan, Elliott M. Ross posted to domains pdz post-defense by kgutwin on 2009-05-20 05:32:04 as
	Gene families: the taxonomy of protein paralogs and chimeras. [My Copy] Science, Vol. 278, No. 5338. (24 October 1997), pp. 609-614. by S. Henikoff, E. A. Greene, S. Pietrokovski, P. Bork, T. K. Attwood, L. Hood posted to domains post-defense by kgutwin on 2009-05-20 05:19:32 as along with 4 people and 1 group bpcusack Einat ruvido svdate structural_bioinformatics
	Physical basis of a protein-DNA recognition code [My Copy] Current Opinion in Structural Biology, Vol. 7, No. 1. (February 1997), pp. 117-125. by Y. Choo posted to domains post-defense zincfinger by kgutwin on 2009-05-20 05:16:44 as
	Protein interaction maps for complete genomes based on gene fusion events [My Copy] Nature, Vol. 402, No. 6757. (04 November 1999), pp. 86-90. by Anton J. Enright, Ioannis Iliopoulos, Nikos C. Kyrpides, Christos A. Ouzounis posted to domains fusion by swp09 on 2009-05-19 15:28:07 as along with 6 people jperkins balajis ruvido selrac carlk iris_2001
	The Origins and Evolution of Eukaryotic Proteins [My Copy] Philosophical Transactions: Biological Sciences, Vol. 349, No. 1329. (1995), pp. 235-240. by Russell F. Doolittle posted to domains evolution human paralogs yeast by swp09 on 2009-05-19 15:27:00 as
	An insight into domain combinations. [My Copy] Bioinformatics, Vol. 17 Suppl 1 (2001) by G. Apic, J. Gough, S. A. Teichmann posted to domains structure by swp09 on 2009-05-14 19:29:58 as along with 4 people wiedenhoeft choonpeng cjeans gulkur
	Evolution of protein domain promiscuity in eukaryotes [My Copy] Genome Res. (29 January 2008), gr.6943508. by Malay K. Basu, Liran Carmel, Igor B. Rogozin, Eugene V. Koonin posted to domains multi-domain by swp09 on 2009-05-12 13:44:26 as along with 10 people druvus kshameer saket cmzmasek michC neils grahamc zwang carlk dchughes
	Domain Architecture Comparison for Multidomain Homology Identification [My Copy] Journal of Computational Biology, Vol. 14, No. 4. (2007), pp. 496-516. by N. Song, R. D. Sedgewick, D. Durand posted to domain_distance domains multi-domain by swp09 on 2009-05-12 13:18:27 as
	Kripke Logical Relations and PCF [My Copy] Information and Computation, Vol. 120, No. 1. (July 1995), pp. 107-116. by P. W. Ohearn, J. G. Riecke posted to domains full-abstraction logical-relations pcf by jdanbrown on 2009-05-11 17:29:28 as along with 1 person voigt
	Domains, Motifs, and Scaffolds: The Role of Modular Interactions in the Evolution and Wiring of Cell Signaling Circuits [My Copy] Annual Review of Biochemistry, Vol. 75, No. 1. (17 March 2006), pp. 655-680. by Roby P. Bhattacharyya, Attila Reményi, Brian J. Yeh, Wendell A. Lim posted to channels circuitry communicating domains motifs signal-processing signaling transducing by Scis0000002 on 2009-05-05 20:53:56 as along with 14 people dfdong chica tomhebbron mmcclean laurabailey rklancer matzke imouthesmp choonpeng koller cjeans melting carlk gulkur
	Analysis of domain motions in large proteins [My Copy] Proteins: Structure, Function, and Genetics, Vol. 34, No. 3., pp. 369-382. by Konrad Hinsen, Aline Thomas, Martin J. Field posted to cores domains normal-modes by ubcg08l on 2009-04-27 12:29:04 as along with 3 people and 3 groups barry shadowman yongzhao structural_bioinformatics Bioinformatics TSRI_MGL
	Human myosin VIIA responsible for the Usher 1B syndrome: a predicted membrane-associated motor protein expressed in developing sensory epithelia [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 93, No. 8. (16 April 1996), pp. 3232-3237. by D. Weil, G. Levy, I. Sahly, et al.F. Levi-Acobas, S. Blanchard, A. El-Amraoui, F. Crozet, H. Philippe, M. Abitbol, C. Petit posted to domains ferm myo7a by shirleym on 2009-04-24 03:54:35 as
	Articulatory strengthening at edges of prosodic domains [My Copy] The Journal of the Acoustical Society of America, Vol. 101, No. 6. (1997), pp. 3728-3740. by Cécile Fougeron, Patricia A. Keating posted to articulatory boundary domains effects prosodic prosody strengthening by mvic on 2009-04-24 02:03:07 as
	Cardiolipin Membrane Domains in Prokaryotes and Eukaryotes [My Copy] Biochimica et Biophysica Acta (BBA) - Biomembranes (14 April 2009) by Eugenia Mileykovskaya, William Dowhan posted to cardiolipin domains eukaryote membrane mileyk09pdf prokyryote by paulschlesinger on 2009-04-17 01:32:25 as
	Optical Imaging of Contrast Response in Macaque Monkey V1 and V2 [My Copy] Cereb. Cortex, Vol. 17, No. 11. (1 November 2007), pp. 2675-2695. by Haidong D. Lu, Anna W. Roe posted to color contrast domains functional imaging optical organization orientation stripes thin v1 v2 by ffcloud on 2009-04-08 17:12:18 as
	The 20 years of PROSITE [My Copy] Nucl. Acids Res., Vol. 36, No. suppl_1. (11 January 2008), pp. D245-249. by Nicolas Hulo, Amos Bairoch, Virginie Bulliard, et al.Lorenzo Cerutti, Beatrice A. Cuche, Edouard de Castro, Corinne Lachaize, Petra S. Langendijk-Genevaux, Christian J. A. Sigrist posted to database domains prosite proteins by Zoltan_Barczikay on 2009-04-02 21:10:21 as along with 8 people and 1 group gwallau nlapalu fbristow ojabado reyez dullhunk hplatero Evangelia LabDros
	Abstract non-interference: parameterizing non-interference by abstract interpretation [My Copy] In POPL '04: Proceedings of the 31st ACM SIGPLAN-SIGACT symposium on Principles of programming languages (2004), pp. 186-197. by Roberto Giacobazzi, Isabella Mastroeni posted to abstract domains interpretation language-based non-interference security by ddemange on 2009-03-30 22:27:30 as along with 2 people scavadini tesissvc
	Observation and Coupling of Domains in a Spin-Spiral Multiferroic [My Copy] Physical Review Letters, Vol. 102, No. 10. (2009), 107202. by D. Meier, M. Maringer, Th, P. Becker, L. Bohatý, M. Fiebig posted to spin_spiral shg multiferroics mnwo4 ferroelectricity experimental domains antiferromagnetism by manganite on 2009-03-23 14:16:24 as
	Diffusion of liquid domains in lipid bilayer membranes. [My Copy] J Phys Chem B, Vol. 111, No. 13. (5 April 2007), pp. 3328-3331. by P. Cicuta, S. L. Keller, S. L. Veatch posted to diffusion domains experiment membrane saffman by reister on 2009-03-12 14:30:45 as along with 1 person kevinchannon
	Residue-specific contact order and contact breadth in single-domain proteins: implications for folding as a function of chain elongation. [My Copy] Biotechnology progress, Vol. 24, No. 3. (n 2008), pp. 570-575. by N. Kurt, B. C. Mounce, P. A. Ellison, S. Cavagnero posted to contact cotranslation domains order protein by saunders on 2009-03-01 10:19:52 as
	Universal features in the genome-level evolution of protein domains. [My Copy] Genome biology, Vol. 10, No. 1. (30 January 2009), R12. by Marco Cosentino Lagomarsino, Alessandro L. Sellerio, Philip D. Heijning, Bruno Bassetti posted to domain domains genome_evolution network_biology network_properties network_topology by grahamc on 2009-02-09 17:54:24 as along with 7 people docv zwang phoenixzxl djkt idoerg VGreiff pawelszczesny
	Domain deletions and substitutions in the modular protein evolution [My Copy] FEBS Journal, Vol. 273, No. 9. (May 2006), pp. 2037-2047. by January W. 3rd, Francois Beaussart, Erich Bornberg-Bauer posted to domains by jameswasmuth on 2009-01-21 16:28:50 as along with 4 people clearbluespring wiedenhoeft choonpeng kluck
	Arrangements in the modular evolution of proteins [My Copy] Trends in Biochemical Sciences, Vol. 33, No. 9. (September 2008), pp. 444-451. by A. Moore posted to domains by jameswasmuth on 2009-01-21 16:27:26 as along with 2 people druvus cmzmasek
	Domain tree-based analysis of protein architecture evolution. [My Copy] Molecular biology and evolution, Vol. 25, No. 2. (1 February 2008), pp. 254-264. by Kristoffer Forslund, Anna Henricson, Volker Hollich, Erik L. Sonnhammer posted to domains by jameswasmuth on 2009-01-21 16:26:09 as along with 5 people martainn calderonv cjeans vinithepooh gulkur
	Global Phylogeny Determined by the Combination of Protein Domains in Proteomes [My Copy] Molecular Biology and Evolution, Vol. 23, No. 12. (15 December 2006), pp. 2444-2454. by Wang, Minglei, Caetano-Anolles, Gustavo posted to domains phylogenetics by jameswasmuth on 2009-01-21 16:25:23 as
	Isolation and characterization of WHI3, a size-control gene of Saccharomyces cerevisiae. [My Copy] Genetics, Vol. 157, No. 4. (April 2001), pp. 1469-1480. by R. S. Nash, T. Volpe, B. Futcher posted to cell domains size whi3 whi4 by Nashwood on 2009-01-19 11:19:01 as

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evolution	31
networks	27
protein-protein	26
protein	23
interactions	22
structure	17
motifs	14
review	14
post-defense	12
prediction	11
binding	10
interaction	10
membrane	10
database	9
peptides	9
bioinformatics	8
computational	8
sh3	8
tir	8
gsc005	7
modular-architecture	7
predictions	7
rafts	7
antiferromagnetism	6
domain	6
experimental	6
rev_ref	6
databases	5
lccl	5
manganites	5
specificity	5
structure-prediction	5
ddi	4
disorder	4
ferroelectricity	4
imaging	4
linkers	4
linkprediction	4
methods	4
multiferroics	4
pathways	4
protein-function	4
rmno3	4
scop	4
sh2	4
shg	4
algorithm	3
astral	3
biology	3
coch	3
denotational	3
dna	3
ecm	3
human	3
lipid	3
magnetism	3
optical	3
pdz	3
ppi	3
proline-rich	3
protein_structure	3
proteins	3
security	3
semantics	3
tools	3
yeast	3
ymno3	3
big-five	2
bsubtilis	2
classification	2
comparative	2
compartmentation	2
conjuntos	2
corolarios	2
diffusion	2
domain-theory	2
elastin	2
eulercorollary	2
fermat	2
group	2
homno3	2
interactome	2
linear	2
matematicas	2
multi-domain	2
organization	2
peripheral	2
protein-design	2
proxy	2
quasar	2
replication	2
signaling	2
size	2
surface	2
thin	2
tom	2
transmembrane	2
two-component	2
use	2
v2	2

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