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Tag duplication [226 articles]

Recent papers classified by the tag duplication.
  • MicroRNAs and the advent of vertebrate morphological complexity
    Proceedings of the National Academy of Sciences (14 February 2008), 0712259105.
    by Alysha M Heimberg, Lorenzo F Sempere, Vanessa N Moy, Philip C Donoghue, Kevin J Peterson
    posted to complexity duplication microrna by zhanglab on 2008-02-20 21:17:29 as **** along with 7 people and 2 groups cmzmasek djkt stajich heliopais maralena prabhubpatil maximilianh microRNA Berkeley Mycology
  • Duplication-degeneration as a mechanism of gene fission and the origin of new genes in Drosophila species.
    Nat Genet, Vol. 36, No. 5. (May 2004), pp. 523-527.
    by W Wang, H Yu, M Long
    posted to duplication new-genes by ushishir on 2005-08-03 14:14:56 as ** along with 1 person and 1 group penka Nie
  • Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize.
    Nat Genet (31 July 2005)
    by Michele Morgante, Stephan Brunner, Giorgio Pea, Kevin Fengler, Andrea Zuccolo, Antoni Rafalski
    posted to duplication new-genes te transposons by ushishir on 2005-08-03 13:53:33 as ** along with 3 people and 2 groups gpappas bsmagic ArtemPankin Bioinformatics bioinplant
  • Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution.
    Genetics, Vol. 169, No. 2. (February 2005), pp. 1157-1164.
    by X He, J Zhang
    posted to duplication new-genes by ushishir on 2005-08-13 11:08:57 as ** along with 3 people pansapiens nirfriedman bluto
  • Gene duplication and speciation in Drosophila: evidence from the Odysseus locus.
    Proc Natl Acad Sci U S A, Vol. 101, No. 33. (17 August 2004), pp. 12232-12235.
    by CT Ting, SC Tsaur, S Sun, WE Browne, YC Chen, NH Patel, CI Wu
    posted to duplication new-genes speciation by ushishir on 2005-08-03 16:45:06 as ** along with 1 person RMGraze
  • Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid fish.
    Proc Natl Acad Sci U S A, Vol. 94, No. 8. (15 April 1997), pp. 3811-3816.
    by L Chen, AL DeVries, CH Cheng
    posted to duplication new-genes by ushishir on 2005-08-03 16:22:09 as **
  • Duplication and divergence: the evolution of new genes and old ideas.
    Annu Rev Genet, Vol. 38 (2004), pp. 615-643.
    by JS Taylor, J Raes
    posted to duplication new-genes by ushishir on 2005-08-13 11:07:49 as ** along with 1 person BioNica
  • Modeling gene and genome duplications in eukaryotes.
    Proc Natl Acad Sci U S A, Vol. 102, No. 15. (12 April 2005), pp. 5454-5459.
    by S Maere, S De Bodt, J Raes, T Casneuf, M Van Montagu, M Kuiper, Y Van de Peer
    posted to duplication new-genes by ushishir on 2005-08-13 10:59:27 as ** along with 6 people and 2 groups imouthesmp Schmidtc dchughes nirfriedman echinotrix timflutre G4ID Genetics-of-Gambling
  • Transcriptional similarities, dissimilarities, and conservation of cis-elements in duplicated genes of Arabidopsis.
    Plant Physiol, Vol. 136, No. 2. (October 2004), pp. 3009-3022.
    by G Haberer, T Hindemitt, BC Meyers, KF Mayer
    posted to duplication new-genes by ushishir on 2005-08-03 16:40:49 as ** along with 2 people and 1 group nklee cisevol cis-regulatory-evolution
  • The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome.
    Genetics, Vol. 165, No. 4. (December 2003), pp. 1793-1803.
    by V Katju, M Lynch
    posted to duplication new-genes by ushishir on 2005-08-13 11:21:31 as ** along with 2 people and 1 group tharris bluto C. elegans / WormBase
  • Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey.
    Nat Genet, Vol. 30, No. 4. (April 2002), pp. 411-415.
    by J Zhang, YP Zhang, HF Rosenberg
    posted to duplication new-genes by ushishir on 2005-08-13 11:12:22 as **
  • Molecular evolution of a duplication: the sex-peptide (Acp70A) gene region of Drosophila subobscura and Drosophila madeirensis.
    Mol Biol Evol, Vol. 15, No. 8. (August 1998), pp. 988-996.
    by S Cirera, M Aguadé
    posted to duplication new-genes by ushishir on 2005-08-13 11:13:16 as **
  • Novel specificities emerge by stepwise duplication of functional modules.
    Genome Res, Vol. 15, No. 4. (April 2005), pp. 552-559.
    by JB Pereira-Leal, SA Teichmann
    posted to duplication new-genes by ushishir on 2005-08-03 16:42:53 as ** along with 3 people tny choonpeng cjeans
  • Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution
    Nature Genetics, Vol. 39, No. 11. (07 October 2007), pp. 1361-1368.
    by Zhaoshi Jiang, Haixu Tang, Mario Ventura, Maria F Cardone, Tomas Marques-Bonet, Xinwei She, Pavel A Pevzner, Evan E Eichler
    posted to bioinformatics duplication humans by urgi on 2008-03-27 13:10:56 as ***** along with 2 people timflutre dmc
  • Selection in the evolution of gene duplications.
    Genome Biol, Vol. 3, No. 2. (2002)
    by FA Kondrashov, IB Rogozin, YI Wolf, EV Koonin
    posted to duplication evolution gene by ujh on 2005-04-16 12:59:52 as read
  • Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution
    BMC Biology, Vol. 6 (16 April 2008), 16.
    by Lex Flagel, Joshua A Udall, Dan Nettleton, Jonathan F Wendel
    posted to duplication evolution expression gene lex by tonia_schwartz on 2008-04-17 14:44:06 as **
  • Gene regulatory network growth by duplication.
    Nat Genet, Vol. 36, No. 5. (May 2004), pp. 492-496.
    by SA Teichmann, MM Babu
    posted to domain duplication gene_reguratory by tny on 2006-01-23 12:52:52 as ** along with 9 people and 2 groups snuppepuppan korakot LeightonP hununu briann jtextori balicea yoh Ema Philosophy_of_Information Blog_and_Wiki_Research
  • Escape from adaptive conflict after duplication in an anthocyanin pathway gene
    Nature (25 June 2008)
    by David, Mark D Rausher
    posted to duplication enzyme evolution by tny on 2008-08-08 05:59:25 as ** along with 3 people and 1 group stajich bpcusack djkt Berkeley Mycology
  • Evolution of circular permutations in multidomain proteins.
    Mol Biol Evol, Vol. 23, No. 4. (April 2006), pp. 734-743.
    by J Weiner, E Bornberg-Bauer
    posted to domain_combination duplication evolution gene_fusion by tny on 2006-05-09 08:45:33 as ** along with 1 person pansapiens
  • The Relationship Between Domain Duplication and Recombination
    Journal of Molecular Biology, Vol. 346, No. 1. (11 February 2005), pp. 355-365.
    by Christine Vogel, Sarah A Teichmann, Jose Pereira-Leal
    posted to domain duplication by tny on 2006-01-23 12:53:07 as ** along with 5 people and 4 groups ana marcius cjeans martainn mdimon structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell
    Nucleic Acids Research, Vol. 33, No. 14. (2005), pp. 4626-4638.
    by Kira S Makarova, Yuri I Wolf, Sergey L Mekhedov, Boris G Mirkin, Eugene V Koonin
    posted to duplication evolution ortholog by tny on 2006-05-23 10:36:37 as ** along with 2 people bluto bpcusack
  • A model of segmental duplication formation in Drosophila melanogaster.
    Genome Research (28 August 2007)
    by Anna-Sophie S Fiston-Lavier, Dominique Anxolabehere, Hadi Quesneville
    posted to duplication droso by timflutre on 2007-09-27 17:47:32 as ** along with 1 person urgi
  • Precise detection of rearrangement breakpoints in mammalian chromosomes
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Claire Lemaitre, Eric Tannier, Christian Gautier, Marie F Sagot
    posted to duplication genomics rearrangements repeats by timflutre on 2008-07-16 11:17:18 as ** along with 4 people and 1 group alivahdat cisevol Neeperando nuin BergmanLab
  • On the evolution of multigene families.
    Theor Popul Biol, Vol. 23, No. 2. (April 1983), pp. 216-240.
    by T Ohta
    posted to duplication modeling by timflutre on 2007-01-11 13:42:42 as **
  • Gene Duplication: The Genomic Trade in Spare Parts
    PLoS Biology, Vol. 2, No. 7. (1 July 2004), e206.
    by Matthew Hurles
    posted to duplication by timflutre on 2007-02-12 12:52:52 as ** along with 1 person treangen
  • Evolution of gene networks by gene duplications: a mathematical model and its implications on genome organization.
    Proc Natl Acad Sci U S A, Vol. 91, No. 10. (10 May 1994), pp. 4387-4391.
    by A Wagner
    posted to duplication networks by timflutre on 2007-02-19 20:54:39 as ** along with 1 person nsamways
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to networks duplication by timflutre on 2007-01-11 15:42:37 as ** along with 18 people and 2 groups cerca bicko lfriedl chad_davis Einat tny choonpeng grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl carlk paolomarcatili saket structural_bioinformatics kdl
  • An appraisal of the potential for illegitimate recombination in bacterial genomes and its consequences: from duplications to genome reduction.
    Genome Res, Vol. 13, No. 6A. (June 2003), pp. 1123-1132.
    by EP Rocha
    posted to duplication genomics by timflutre on 2007-02-14 16:39:03 as ** along with 1 person operon
  • The evolution of multigene families under intrachromosomal gene conversion.
    Genetics, Vol. 106, No. 3. (March 1984), pp. 529-548.
    by T Nagylaki
    posted to duplication by timflutre on 2007-01-11 13:39:15 as **
  • Evolving protein interaction networks through gene duplication.
    J Theor Biol, Vol. 222, No. 2. (21 May 2003), pp. 199-210.
    by R Pastor-Satorras, E Smith, RV Solé
    posted to networks robustness duplication by timflutre on 2007-01-11 15:07:32 as ** along with 1 person gurkanbebek
  • Evolution of multigene families under interchromosomal gene conversion.
    Proc Natl Acad Sci U S A, Vol. 81, No. 12. (June 1984), pp. 3796-3800.
    by T Nagylaki
    posted to duplication by timflutre on 2007-01-11 13:40:31 as **
  • Extent of gene duplication in the genomes of Drosophila, nematode, and yeast.
    Mol Biol Evol, Vol. 19, No. 3. (March 2002), pp. 256-262.
    by Z Gu, A Cavalcanti, FC Chen, P Bouman, WH Li
    posted to duplication by timflutre on 2007-02-26 21:02:36 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • Non-random association of transposable elements with duplicated genomic blocks in Arabidopsis thaliana.
    Mol Phylogenet Evol, Vol. 29, No. 3. (December 2003), pp. 410-416.
    by AL Hughes, R Friedman, V Ekollu, JR Rose
    posted to duplication athaliana te by timflutre on 2007-01-11 14:20:28 as **
  • Structural divergence of chromosomal segments that arose from successive duplication events in the Arabidopsis genome.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003), pp. 1339-1350.
    by PA Ziolkowski, G Blanc, J Sadowski
    posted to athaliana duplication by timflutre on 2007-06-04 15:57:35 as **
  • The genesis and evolution of homeobox gene clusters
    Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 881-892.
    by Jordi Garcia-Fernàndez
    posted to duplication evo_devo homeobox by timflutre on 2007-11-06 17:40:10 as ** along with 7 people and 2 groups brant balicea emilyhare nickluscombe BioMaxi blobbybirdman blackm0k EisenLab EBI-regulation
  • Simulating evolution by gene duplication.
    Genetics, Vol. 115, No. 1. (January 1987), pp. 207-213.
    by T Ohta
    posted to duplication modeling by timflutre on 2007-01-11 13:45:20 as **
  • Concerted and birth-and-death evolution of multigene families.
    Annual Review in Genetics, Vol. 39 (2005), pp. 121-152.
    by M Nei, AP Rooney
    posted to duplication by timflutre on 2007-01-14 14:00:26 as ** along with 1 person and 2 groups dchughes G4ID Genetics-of-Gambling
  • Identification and Characterization of Shared Duplications between Rice and Wheat Provide New Insight into Grass Genome Evolution.
    Plant Cell (4 January 2008)
    by Jérôme Salse, Stéphanie Bolot, Michaël Throude, Vincent Jouffe, Benoît Piegu, Umar Masood Quraishi, Thomas Calcagno, Richard Cooke, Michel Delseny, Catherine Feuillet
    posted to duplication genomics rice wheat by timflutre on 2008-01-28 11:49:54 as **
  • Evolution of multigene families by gene duplication. A haploid model.
    Genetics, Vol. 149, No. 4. (August 1998), pp. 2147-2158.
    by H Tachida, T Kuboyama
    posted to duplication modeling pop_genetics by timflutre on 2007-01-11 14:12:28 as **
  • Structural dynamics of eukaryotic chromosome evolution.
    Science, Vol. 301, No. 5634. (8 August 2003), pp. 793-797.
    by EE Eichler, D Sankoff
    posted to duplication genomics by timflutre on 2007-03-08 21:47:03 as ***** along with 2 people david_parsons sharpton
  • The Evolutionary Fate and Consequences of Duplicate Genes
    Science, Vol. 290, No. 5494. (10 November 2000), pp. 1151-1155.
    by Michael Lynch, John S Conery
    posted to duplication by timflutre on 2007-02-26 21:00:40 as ** along with 8 people and 1 group tharris knaseanka arve nirfriedman echinotrix treangen BioNica clearbluespring C. elegans / WormBase
  • The origin of new genes: glimpses from the young and old.
    Nature Review Genetics, Vol. 4, No. 11. (November 2003), pp. 865-875.
    by M Long, E Betrán, K Thornton, W Wang
    posted to duplication by timflutre on 2007-02-07 13:34:46 as ** along with 2 people ushishir shoshin
  • Genome duplication and the origin of angiosperms
    Trends in Ecology & Evolution, Vol. 20, No. 11. (November 2005), pp. 591-597.
    by Stefanie De Bodt, Steven Maere, Yves Van de Peer
    posted to duplication plants by timflutre on 2007-08-29 10:00:48 as ** along with 3 people and 1 group cmm echinotrix plofje FAB-lab
  • Eyespot-assembly mutants in Chlamydomonas reinhardtii.
    Genetics, Vol. 153, No. 2. (October 1999), pp. 721-729.
    by MR Lamb, SK Dutcher, CK Worley, CL Dieckmann
    posted to duplication eye by thoakley on 2006-05-12 07:56:45 as ****
  • Extensive Concerted Evolution of Rice Paralogs and the Road to Regaining Independence
    Genetics, Vol. 177, No. 3. (1 November 2007), pp. 1753-1763.
    by Xiyin Wang, Haibao Tang, John E Bowers, Frank A Feltus, Andrew H Paterson
    posted to conversion duplication gene genome paralog rice by tanghaibao on 2008-04-25 04:13:27 as ** along with 2 people dandaman BioNica
  • Emergence of primate genes by retrotransposon-mediated sequence transduction.
    Proc Natl Acad Sci U S A, Vol. 103, No. 47. (21 November 2006), pp. 17608-17613.
    by J Xing, H Wang, VP Belancio, R Cordaux, PL Deininger, MA Batzer
    posted to retrotransposons jc gene duplication by syoung11 on 2007-01-16 19:49:00 as *** along with 1 person srfairclough
  • The Probability of Duplicate Gene Preservation by Subfunctionalization
    Genetics, Vol. 154, No. 1. (1 January 2000), pp. 459-473.
    by Michael Lynch, Allan Force
    posted to duplication neofunctionalization subfunctionalization by Stew on 2007-09-19 18:36:15 as read along with 2 people and 1 group bluto BioNica EisenLab
  • Keeping the blood flowing—plasminogen activator genes and feeding behavior in vampire bats
    Naturwissenschaften
    by Åsa Tellgren-Roth, Katharina Dittmar, Steven Massey, Cecilia Kemi, Christian Tellgren-Roth, Peter Savolainen, Leslie Lyons, David Liberles
    posted to vertebrate parasite duplication by stevanspringer on 2008-10-01 21:19:57 as **
  • An adaptive radiation model for the origin of new gene functions
    Nature Genetics, Vol. 37, No. 6. (26 May 2005), pp. 573-578.
    by Pilar P Francino
    posted to adaptation duplication hypothesis by stevanspringer on 2005-06-09 01:37:22 as ** along with 3 people and 1 group tmmurali imouthesmp bpcusack FAB-lab
  • Rapid Evolution by Positive Selection and Gene Gain and Loss: PLA2 Venom Genes in Closely Related Sistrurus Rattlesnakes with Divergent Diets
    Journal of Molecular Evolution, Vol. 66, No. 2. (20 February 2008), pp. 151-166.
    by H Gibbs, Wayne Rossiter
    posted to behaviour duplication loss vertebrate by stevanspringer on 2008-03-24 17:39:43 as **
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