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Tag dynamics [967 articles]

Recent papers classified by the tag dynamics.
  • Molecular dynamics simulations of nucleic acid-protein complexes
    Current Opinion in Structural Biology, Vol. In Press, Corrected Proof
    by Mackerell, Lennart Nilsson
    posted to complex dna dynamics protein rna by zwang on 2008-02-27 02:28:21 as *** along with 3 people and 1 group ruvido sobolevnrm phoenixzxl baker-group
  • Ensemble modeling for analysis of cell signaling dynamics
    Nature Biotechnology, Vol. 25, No. 9. (10 September 2007), pp. 1001-1006.
    by Lars Kuepfer, Matthias Peter, Uwe Sauer, Jörg Stelling
    posted to dynamics modeling by zwang on 2007-09-14 04:59:00 as **
  • The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication
    Proceedings of the National Academy of Sciences (16 January 2008), 0707293105.
    by Aviva Presser, Michael B Elowitz, Manolis Kellis, Roy Kishony
    posted to dynamics evolution interaction network protein yeast by zwang on 2008-01-24 13:09:27 as *** along with 3 people cjeans roys phoenixzxl
  • Estimating dynamic models for gene regulation networks
    Bioinformatics (27 May 2008), btn246.
    by Jiguo Cao, Hongyu Zhao
    posted to dynamics gene modeling network regulation by zwang on 2008-06-03 04:00:45 as **
  • A structural understanding of the dynamic ribosome machine
    Nature Reviews Molecular Cell Biology, Vol. 9, No. 3., pp. 242-253.
    by Thomas A Steitz
    posted to dynamics ribosome structure by zwang on 2008-02-23 07:16:18 as * along with 1 person simone
  • A mathematical tool for exploring the dynamics of biological networks
    Proceedings of the National Academy of Sciences (21 November 2007), 0709955104.
    by Paolo E Barbano, Marina Spivak, Marc Flajolet, Angus C Nairn, Paul Greengard, Leslie Greengard
    posted to dynamics network by zwang on 2007-12-05 11:07:13 as ** along with 9 people and 1 group tmmurali cjeans cactus sobolevnrm forgoston lenov sdbneuro mdramirez phoenixzxl baker-group
  • Subnetwork analysis reveals dynamic features of complex (bio)chemical networks
    Proceedings of the National Academy of Sciences (27 November 2007), 0705731104.
    by Carsten Conradi, Dietrich Flockerzi, Jorg Raisch, Jorg Stelling
    posted to dynamics network by zwang on 2007-12-05 10:58:53 as * along with 2 people roys mclarenv
  • Interaction Intimacy Affects Structure and Coevolutionary Dynamics in Mutualistic Networks
    Current Biology, Vol. 17, No. 20. (23 October 2007), pp. 1797-1803.
    by Guimaraes, Victor Rico-Gray, Paulo S Oliveira, Thiago J Izzo, Dos, John N Thompson
    posted to co-evolution dynamics interaction network structure by zwang on 2007-10-25 08:06:40 as ***
  • Imaging dynamics of endogenous mitochondrial RNA in single living cells
    Nat Meth, Vol. 4, No. 5. (May 2007), pp. 413-419.
    by Takeaki Ozawa, Yutaka Natori, Moritoshi Sato, Yoshio Umezawa
    posted to dynamics endogenous rna visualization by zwang on 2007-04-27 12:17:46 as *** along with 1 person peterlowey
  • Using Likelihood-Free Inference to Compare Evolutionary Dynamics of the Protein Networks of H. pylori and P. falciparum
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e230.
    by Oliver Ratmann, Ole Jørgensen, Trevor Hinkley, Michael Stumpf, Sylvia Richardson, Carsten Wiuf
    posted to dynamics evolution likelihood network protein by zwang on 2007-12-10 04:38:11 as *** along with 5 people TheresaNiederberger xingxu hpaces Ema tresch
  • Large-Scale Molecular Dynamics Simulations of Self-Assembling Systems
    Science, Vol. 321, No. 5890. (8 August 2008), pp. 798-800.
    by Michael L Klein, Wataru Shinoda
    posted to assembly dynamics by zwang on 2008-08-11 09:18:35 as ** along with 5 people abebe skumagai pbartlett dgront middledomain
  • Dynamic Simulations on the Arachidonic Acid Metabolic Network
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e55.
    by Kun Yang, Wenzhe Ma, Huanhuan Liang, Qi Ouyang, Chao Tang, Luhua Lai
    posted to dynamics network by zwang on 2007-04-19 15:11:28 as *
  • Thermodynamics of Neutral Protein Evolution
    Genetics, Vol. 175, No. 1. (1 January 2007), pp. 255-266.
    by Jesse D Bloom, Alpan Raval, Claus O Wilke
    posted to dynamics evolution protein by zwang on 2007-04-16 13:30:53 as ** along with 1 person BioNica
  • Tunability and Noise Dependence in Differentiation Dynamics
    Science, Vol. 315, No. 5819. (23 March 2007), pp. 1716-1719.
    by Gurol M Suel, Rajan P Kulkarni, Jonathan Dworkin, Jordi Garcia-Ojalvo, Michael B Elowitz
    posted to differentiation dynamics noise by zwang on 2007-03-30 08:55:08 as * along with 3 people and 2 groups jjray dbikard margaritis Centre de Recherches Interdisciplinaires SynBioSys
  • Understanding the Evolutionary Fate of Finite Populations: The Dynamics of Mutational Effects
    PLoS Biology, Vol. 5, No. 4. (1 April 2007), e94.
    by Olin K Silander, Olivier Tenaillon, Lin Chao
    posted to dynamics evolution mutation by zwang on 2007-04-19 15:16:28 as * along with 3 people and 1 group stevanspringer joepickrell yvoronin FAB-lab
  • A consensus view of protein dynamics.
    Proc Natl Acad Sci U S A (10 January 2007)
    by Manuel Rueda, Carles Ferrer-Costa, Tim Meyer, Alberto Pérez, Jordi Camps, Adam Hospital, Josep Lluis L Gelpí, Modesto Orozco
    posted to dynamics protein by zwang on 2007-04-16 13:43:21 as * along with 13 people and 2 groups bmduggan lna dimka aqeel aswin rabio grahamc hmk biehl Ema phoenixzxl ras LamBras ParkinsonLab_at_MaRS The BMM Dome
  • Fluorescence Imaging of Membrane Dynamics
    Annual Review of Biomedical Engineering, Vol. 10, No. 1. (2008), pp. 311-338.
    by Jay T Groves, Raghuveer Parthasarathy, Martin B Forstner
    posted to dynamics fluorescent by zwang on 2008-07-23 07:12:52 as ** along with 1 person and 1 group sobolevnrm baker-group
  • Computational studies of the structure, dynamics and native content of amyloid-like fibrils of ribonuclease A
    Proteins: Structure, Function, and Bioinformatics, Vol. 9999, No. 9999. (2007), NA.
    by Giorgio Colombo, Massimiliano Meli, Alfonso De Simone
    posted to dynamics protein structure by zwang on 2007-10-12 07:36:37 as ** along with 2 people RamuAnandakrishnan fullofgrace88
  • The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
    PLoS Computational Biology, Vol. 3, No. 4. (1 April 2007), e59.
    by Haiyuan Yu, Philip M Kim, Emmett Sprecher, Valery Trifonov, Mark Gerstein
    posted to dynamics network protein by zwang on 2007-04-28 12:38:55 as ** along with 5 people jiny jfr Takayuki hryk carlk
  • A Gene Regulatory Network Subcircuit Drives a Dynamic Pattern of Gene Expression
    Science, Vol. 318, No. 5851. (2 November 2007), pp. 794-797.
    by Joel Smith, Christina Theodoris, Eric H Davidson
    posted to dynamics expression gene network regulatory by zwang on 2007-11-05 14:33:49 as * along with 5 people and 1 group cwbrown lshaw shigepong heliopais hpaces EisenLab
  • The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 February 2007), e59.eor.
    by Haiyuan Yu, Philip M Kim, Emmett Sprecher, Valery Trifinov, Mark Gerstein
    posted to dynamics network protein by zwang on 2007-04-21 05:52:33 as *** along with 4 people grahamc Pao-Yang taiei688 dylanwalker
  • Control of Membrane Fusion Mechanism by Lipid Composition: Predictions from Ensemble Molecular Dynamics
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e220.
    by Peter M Kasson, Vijay S Pande
    posted to dynamics prediction by zwang on 2007-12-10 04:34:31 as * along with 3 people and 1 group sobolevnrm paulschlesinger Ema baker-group
  • On the Dynamic Response of Electrostatic MEMS Switches
    Microelectromechanical Systems, Journal of, Vol. 17, No. 1. (2008), pp. 236-243.
    by V Leus, D Elata
    posted to dynamics electrostatic mems mems-switch by z3phyr on 2008-08-29 19:11:38 as **
  • When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation
    Mol Syst Biol, Vol. 2 (2006)
    by MTAP Kresnowati, WA van Winden, MJH Almering, A Proell, C Ras, TA Knijnenburg, PAS Daran-Lapujade, JT Pronk, JJ Heijnen, JM Daran
    posted to dynamics metabolism network simulation yeast by yyin02 on 2006-09-26 20:14:55 as ** along with 2 people alexg westoll
  • Collinear Three-Body Problem with Non-Equal Masses by Symbolic Dynamics
    Vol. 316 (November 2004), 63.
    by MM Saito, K Tanikawa
    edited by GG Byrd, KV Kholshevnikov, AA Myllri, II Nikiforov, VV Orlov
    posted to copy dynamics by yoriyuki on 2008-06-06 10:00:44 as **
  • notes The Influence of Successor-Related Factors on the Succession Process in Small and Medium-Sized Family Businesses
    Family Business Review, Vol. 18, No. 4. (December 2005), pp. 283-303.
    by E Venter, C Boshoff, G Maas
    posted to dynamics process succession by yoonjia on 2006-10-16 15:03:19 as **
  • Ownership Preferences, Competitive Heterogeneity, and Family-Controlled Businesses
    Family Business Review, Vol. 19, No. 2. (June 2006), pp. 89-101.
    by Hoopes, G David, Miller, Danny
    posted to dynamics family by yoonjia on 2006-10-16 14:43:15 as *****
  • Family Dynamic and Family Business Financial Performance: Spousal Commitment
    Family Business Review, Vol. 19, No. 1. (March 2006), pp. 49-63.
    by Van Auken, Howard, Werbel, James
    posted to dynamics family by yoonjia on 2006-10-16 14:48:01 as *****
  • Internationalization of Australian Family Businesses: A Managerial Capabilities Perspective
    Family Business Review, Vol. 19, No. 3. (September 2006), pp. 207-224.
    by Graves, Chris, Thomas, Ill
    posted to dynamics family by yoonjia on 2006-10-16 14:44:29 as ****
  • Information Dynamics in the Networked World
    (13 Oct 2003)
    by Bernardo A Huberman, Lada A Adamic
    posted to dynamics information network by yoneta on 2006-06-28 10:50:08 as **** along with 3 people and 1 group nkorf craigtalbert scis0000001 Semantic-Social-Networks
  • Web Usage Mining Using Artificial Ant Colony Clustering And Genetic Programming
    by Vitorino Ramos, Ajith Abraham
    posted to ant cognition colony dynamics eni information networks simulation social swarms by yish on 2005-12-06 12:19:38 as ** along with 4 people and 22 groups ssn vitorinoramos arasbm firas structural_bioinformatics NeuronDynamics MathBio MemeticAlgorithms Computational-Genomics Pattern-Analysis Semantic-Social-Networks Ubicomp InformationRetrieval Bioinformatics mathgamespatterns Computational_Systems_Biology LocationAwareComputing dtl vds-arg SwarmCompBio aLifeComplexSys Artificial-Immune-Systems Cybernetics EvolutionaryComputation GenerativeArt eni
  • On the bursty evolution of blogspace
    (2003), pp. 568-576.
    by Ravi Kumar, Jasmine Novak, Prabhakar Raghavan, Andrew Tomkins
    posted to blogs collaborative dynamics mathematics metamind mind networks social by yish on 2005-11-26 14:50:06 as ** along with 25 people and 11 groups mercutio ssn A_Olympia rickl pdlug mapio breyten moreno ChaTo sachac stagediver augusto sids balicea donade griota manu_ds stefans boila mikethelwall peefeeyatko olenka_br thesis2007 randomname Asur Philosophy_of_Information Blog_and_Wiki_Research utoronto-iml mathgamespatterns dtl vds-arg eni AIRgroup ilps memoir oktave-labs
  • Swarms on Continuous Data
    by Vitorino Ramos, Ajith Abraham
    posted to ant cognition colony dynamics information networks simulation social swarms by yish on 2005-12-06 12:18:35 as ** along with 5 people and 22 groups vitorinoramos kdiwold cliveholtham ianturton rsantana structural_bioinformatics NeuronDynamics MathBio MemeticAlgorithms Computational-Genomics Pattern-Analysis Semantic-Social-Networks Ubicomp InformationRetrieval Bioinformatics mathgamespatterns Computational_Systems_Biology LocationAwareComputing dtl vds-arg SwarmCompBio aLifeComplexSys Artificial-Immune-Systems Cybernetics EvolutionaryComputation GenerativeArt eni
  • Thermodynamic formalism and large deviation functions in continuous time Markov dynamics
    (16 Mar 2007)
    by Vivien Lecomte, Cecile Appert-Rolland, Frederic Van-Wijland
    posted to dynamics math by yidao on 2007-03-20 03:39:03 as *** along with 2 people ansobol TH
  • Dynamics in one complex variable: introductory lectures
    (20 Apr 1990)
    by John W Milnor
    posted to book complex dynamics milnor by xoran99 on 2008-06-23 21:46:09 as read
  • THE INFORMATION MODEL OF COLLECTIVE DYNAMICS
    Cybernetics and Systems, Vol. 36, No. 3. (May 2005), pp. 283-307.
    by Lerner LADIMIR Vladimir
    posted to collective dynamics by xlli on 2005-12-10 22:43:20 as ** along with 1 person balicea
  • Transient cognitive dynamics, metastability, and decision making.
    PLoS computational biology, Vol. 4, No. 5. (May 2008)
    by MI Rabinovich, R Huerta, P Varona, VS Afraimovich
    posted to adhd dynamics nonlinear transient-cognitive by xinian on 2008-05-05 08:41:08 as read along with 2 people and 1 group fbaroni suizan resting-state_networks
  • Analysis of dynamic brain imaging data.
    Biophys J, Vol. 76, No. 2. (February 1999), pp. 691-708.
    by PP Mitra, B Pesaran
    posted to dynamics by xinian on 2006-09-11 11:44:53 as read along with 7 people andreasloew balicea gane5h diancu kperdue as3171 bayesian
  • Connectivity and complexity: the relationship between neuroanatomy and brain dynamics.
    Neural Netw, Vol. 13, No. 8-9. (v 2000), pp. 909-922.
    by O Sporns, G Tononi, GM Edelman
    posted to brain dynamics functional-connectivity small-world-network by xinian on 2007-03-27 13:26:39 as ***** along with 2 people jmarcelino apeyrache
  • Dynamic functional connectivity.
    Curr Opin Neurobiol (20 March 2007)
    by Andreas A A Ioannides
    posted to dynamics functional-connectivity by xinian on 2007-03-27 13:43:30 as **** along with 5 people and 1 group prerona pbellec suizan jmarcelino liangwang Functional_Imaging
  • Spreading dynamics on small-world networks with connectivity fluctuations and correlations.
    Phys Rev E Stat Nonlin Soft Matter Phys, Vol. 74, No. 5 Pt 2. (November 2006)
    by A Vazquez
    posted to dynamics small-world-network by xinian on 2007-03-27 13:40:38 as ***** along with 1 person Malc
  • Detection of signal synchronizations in resting-state fMRI datasets.
    Neuroimage, Vol. 29, No. 1. (1 January 2006), pp. 321-327.
    by B Thirion, S Dodel, JB Poline
    posted to dynamics fmri resting-state by xinian on 2006-09-22 08:00:51 as read along with 4 people and 2 groups pbellec pervane suizan dcoates Functional_Imaging resting-state_networks
  • Cortical coordination dynamics and cognition
    Trends in Cognitive Sciences, Vol. 5, No. 1. (1 January 2001), pp. 26-36.
    by Steven L Bressler, Scott JA Kelso
    posted to brain dynamics by xinian on 2007-02-27 04:42:19 as ** along with 3 people josepe ebalp balicea
  • Intrinsic brain activity sets the stage for expression of motivated behavior
    The Journal of Comparative Neurology, Vol. 493, No. 1. (2005), pp. 167-176.
    by Marcus E Raichle, Debra A Gusnard
    posted to brain default-mode dynamics by xinian on 2007-05-01 06:32:42 as read along with 3 people josepe suizan jmchauvet
  • Classification of functional brain images with a spatio-temporal dissimilarity map
    NeuroImage, Vol. 33, No. 1. (15 October 2006), pp. 63-71.
    by Svetlana V Shinkareva, Hernando C Ombao, Bradley P Sutton, Aprajita Mohanty, Gregory A Miller
    posted to clustering dynamics fmri by xinian on 2006-09-24 07:26:25 as **
  • Brain dynamics during natural viewing conditions--a new guide for mapping connectivity in vivo.
    Neuroimage, Vol. 24, No. 2. (15 January 2005), pp. 339-349.
    by A Bartels, S Zeki
    posted to brain dynamics ica by xinian on 2006-09-12 10:07:33 as *** along with 3 people and 2 groups pbellec rutiah suizan Functional_Imaging resting-state_networks
  • Dynamical principles in neuroscience
    Reviews of Modern Physics, Vol. 78, No. 4. (2006)
    by Mikhail I Rabinovich, Pablo Varona, Allen I Selverston, Henry DI Abarbanel
    posted to brain dynamics neuroscience by xinian on 2007-02-27 05:00:21 as **** along with 7 people and 1 group Borelli bayesian eyliu suizan chumerin abominable ebalp CNRG
  • Bernstein's dynamic view of the brain: the current problems of modern neurophysiology (1945).
    Motor Control, Vol. 2, No. 4. (October 1998), pp. 283-305.
    by O Sporns, GM Edelman, OG Meijer
    posted to brain dynamics by xinian on 2007-03-27 13:28:28 as ***
  • Steady-state solutions in mathematical models of atrial cell electrophysiology and their stability.
    Math Biosci (10 November 2006)
    by Vincent Jacquemet
    posted to dynamics mathematical-model steady-state by xinian on 2007-02-27 04:34:08 as ** along with 1 person rsimitev
  • Dynamic Properties of Network Motifs Contribute to Biological Network Organization.
    PLoS Biol, Vol. 3, No. 11. (4 October 2005)
    by Robert J J Prill, Pablo A A Iglesias, Andre Levchenko
    posted to complex-network dynamics by xinian on 2007-03-27 13:17:12 as **** along with 10 people and 1 group tmmurali monod textoris bayesian luispedro jdiggans phoenixzxl watson stefanoallesina marck NeuralNetworks
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