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	Stoichiometric flux balance models quantitatively predict growth and metabolic by-product secretion in wild-type Escherichia coli W3110. [My Copy] Appl. Environ. Microbiol., Vol. 60, No. 10. (1 October 1994), pp. 3724-3731. by A. Varma, B. O. Palsson posted to metabolic-pathways flux-balance-model e-coli bioproduction by stharward on 2009-12-23 14:47:13 as along with 3 people JeremyZucker winterstream madhadron
	Metabolic engineering of Escherichia coli for enhanced production of succinic acid, based on genome comparison and in silico gene knockout simulation. [My Copy] Applied and environmental microbiology, Vol. 71, No. 12. (December 2005), pp. 7880-7887. by Sang Jun J. Lee, Dong-Yup Y. Lee, Tae Yong Y. Kim, Byung Hun H. Kim, Jinwon Lee, Sang Yup Y. Lee posted to systems-biology metabolic-pathways flux-balance-model e-coli bioproduction by stharward on 2009-12-22 19:24:36 as
	Reconciling gene expression data with known genome-scale regulatory network structures. [My Copy] Genome Res, Vol. 13, No. 11. (November 2003), pp. 2423-2434. by M. J. Herrgård, M. W. Covert, B. Ø. Palsson posted to yeast regulatory-network priors e-coli by frohike on 2009-12-21 10:20:00 as along with 3 people opheliav wnpx tvdbulck
	Graphle: Interactive exploration of large, dense graphs [My Copy] BMC Bioinformatics, Vol. 10, No. 1. (2009), 417. by Curtis Huttenhower, Sajid Mehmood, Olga Troyanskaya posted to yeast visualization prefuse networks java human graphs e-coli biology by behindtherabbit on 2009-12-14 16:04:46 as along with 3 people and 1 group nuin dullhunk karthikraman Journal picks
	Insights intoEscherichia coliRNA Polymerase Structure from a Combination of X-Ray and Electron Crystallography [My Copy] Journal of Structural Biology, Vol. 124, No. 2-3. (15 December 1998), pp. 115-122. by S Darst, posted to protein-structure e-coli crystallography by stharward on 2009-12-08 19:51:43 as
	Large-Scale Mapping and Validation of Escherichia coli Transcriptional Regulation from a Compendium of Expression Profiles [My Copy] PLoS Biol, Vol. 5, No. 1. (9 January 2007), e8. by Jeremiah J. Faith, Boris Hayete, Joshua T. Thaden, et al.Ilaria Mogno, Jamey Wierzbowski, Guillaume Cottarel, Simon Kasif, James J. Collins, Timothy S. Gardner posted to reverse-engineering-gene-network mutual-information gene-network e-coli compendium clr by frohike on 2009-11-13 12:48:15 as along with 10 people and 2 groups ocs mwpeters8182 icases jfr teuder nickluscombe aswin heliopais austin roys EBI-regulation TNT
	EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism [My Copy] Nucl. Acids Res., Vol. 25, No. 1. (1 January 1997), pp. 43-51. by P. D. Karp, M. Riley, S. M. Paley, A. Pellegrini-Toole, M. Krummenacker posted to metabolic-pathways graph-drawing e-coli database by stharward on 2009-11-11 20:49:40 as
	Detailing regulatory networks through large scale data integration [My Copy] Bioinformatics In Bioinformatics, Vol. 25, No. 24. (15 December 2009), pp. 3267-3274. by Curtis Huttenhower, K. Tsheko Mutungu, Natasha Indik, et al.Woongcheol Yang, Mark Schroeder, Joshua J. Forman, Olga G. Troyanskaya, Hilary A. Coller posted to bayesian-integration data-integration motif module e-coli biclustering by frohike on 2009-10-14 11:08:07 as along with 13 people and 1 group icecrown druvus bsamal natstreet H-Arrietaumn farhat TRHvidsten tmmurali meanerelk aaron_webber zufar ptrobajo rdiaz Orengo Group Journal Picks
	Complex patterns formed by motile cells of Escherichia coli [My Copy] Nature, Vol. 349, No. 6310. (14 February 1991), pp. 630-633. by Elena O. Budrene, Howard C. Berg posted to self-propelled pattern flock experimental e-coli by chiufanlee on 2009-10-12 09:37:51 as along with 1 person chrn
	A synthetic oscillatory network of transcriptional regulators [My Copy] Nature, Vol. 403, No. 6767. (20 January 2000), pp. 335-338. by Michael B. Elowitz, Stanislas Leibler posted to synthetic-biology interaction-networks gfp e-coli by stharward on 2009-10-08 20:26:09 as along with 23 people and 1 group joseph_x_zhou balabu dbikard dannya222 abhishek_tiwari adamnellis sjayanthi jasonpark1 cjryan ClaireFB mattions rklancer dgront sharatjv mhucka margaritis Grobi msuarezdiez tvdbulck austin jjray dagmar Borelli BP205
	Crowding and Confinement Effects on Protein Diffusion In Vivo [My Copy] J. Bacteriol., Vol. 188, No. 17. (1 September 2006), pp. 6115-6123. by Michael C. Konopka, Irina A. Shkel, Scott Cayley, M. Thomas Record, James C. Weisshaar posted to frap e-coli diffusion by ARobson on 2009-09-02 16:00:37 as along with 1 person ocs
	In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data [My Copy] Nat Biotech, Vol. 19, No. 2. (February 2001), pp. 125-130. by Jeremy S. Edwards, Rafael U. Ibarra, Bernhard O. Palsson posted to metabolic-pathways e-coli computational by stharward on 2009-08-24 20:29:59 as along with 1 person cerca
	EcoCyc: A comprehensive view of Escherichia coli biology [My Copy] Nucleic Acids Research, Vol. 37, No. Database Issue. (1 January 2009), pp. D464-470. by I. M. Keseler, C. Bonavides-Martinez, J. Collado-Vides, et al.S. Gama-Castro, R. P. Gunsalus, D. A. Johnson, M. Krummenacker, L. M. Nolan, S. Paley, I. T. Paulsen, M. Peralta-Gil, A. Santos-Zavaleta, A. G. Shearer, P. D. Karp posted to software e-coli data-sets by kentz on 2009-08-21 15:32:45 as along with 2 people robert85 guhjy
	High-throughput, quantitative analyses of genetic interactions in E. coli [My Copy] Nat Meth, Vol. 5, No. 9. (1 September 2008), pp. 781-787. by Athanasios Typas, Robert J. Nichols, Deborah A. Siegele, et al.Michael Shales, Sean R. Collins, Bentley Lim, Hannes Braberg, Natsuko Yamamoto, Rikiya Takeuchi, Barry L. Wanner, Hirotada Mori, Jonathan S. Weissman, Nevan J. Krogan, Carol A. Gross posted to epistasis emap e-coli by colmryan on 2009-08-20 16:38:33 as along with 5 people lbnc blwanner nedwards guhjy carlk
	Automated Confocal Laser Scanning Microscopy and Semiautomated Image Processing for Analysis of Biofilms [My Copy] Appl. Environ. Microbiol., Vol. 64, No. 11. (1 November 1998), pp. 4115-4127. by Martin Kuehn, Martina Hausner, Hans-Joachim Bungartz, Michael Wagner, Peter A. Wilderer, Stefan Wuertz posted to transformation image-analysis gfp fluorescence-microscopy e-coli cell-motility bacteria by stharward on 2009-07-29 22:29:02 as
	Reversible and Irreversible Adhesion of Motile Escherichia coli Cells Analyzed by Total Internal Reflection Aqueous Fluorescence Microscopy [My Copy] Appl. Environ. Microbiol., Vol. 68, No. 6. (1 June 2002), pp. 2794-2801. by Margot A. S. Vigeant, Roseanne M. Ford, Michael Wagner, Lukas K. Tamm posted to image-analysis fluorescence-microscopy e-coli cell-motility bacteria by stharward on 2009-07-29 22:04:07 as
	Nanometer Distances between Swimming Bacteria and Surfaces Measured by Total Internal Reflection Aqueous Fluorescence Microscopy [My Copy] Langmuir, Vol. 17, No. 7. (1 April 2001), pp. 2235-2242. by Margot A. S. Vigeant, Michael Wagner, Lukas K. Tamm, Roseanne M. Ford posted to image-analysis fluorescence-microscopy e-coli cell-motility bacteria by stharward on 2009-07-29 21:47:26 as
	Three-dimensional tracking of motile bacteria near a solid planar surface [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 92, No. 13. (20 June 1995), pp. 6195-6199. by P. D. Frymier, R. M. Ford, H. C. Berg, P. T. Cummings posted to light-microscopy image-analysis e-coli cell-motility bacteria by stharward on 2009-07-29 21:27:13 as along with 1 person vladimirov
	Interactions between motile Escherichia coli and glass in media with various ionic strengths, as observed with a three-dimensional-tracking microscope [My Copy] Appl. Environ. Microbiol., Vol. 63, No. 9. (1 September 1997), pp. 3474-3479. by M. A. Vigeant, R. M. Ford posted to single-cell light-microscopy e-coli cell-motility bacteria by stharward on 2009-07-29 21:17:56 as
	Protein sequence comparison at genome scale [My Copy] In Computer Methods for Macromolecular Sequence Analysis, Vol. 266 (1996), pp. 295-322. by E. Koonin, R. Tatusov, K. Rudd posted to genome e-coli comparative-sequence-analysis by stharward on 2009-07-27 21:04:44 as
	Sequence similarity analysis of Escherichia coli proteins: functional and evolutionary implications [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 92, No. 25. (5 December 1995), pp. 11921-11925. by E. V. Koonin, R. L. Tatusov, K. E. Rudd posted to sequence-search homology-identification genome e-coli comparative-sequence-analysis by stharward on 2009-07-27 20:38:57 as along with 1 person vibrio
	Cell cycle synchronization of Escherichia coli using the stringent response, with fluorescence labeling assays for DNA content and replication [My Copy] Methods, Vol. 48, No. 1. (May 2009), pp. 8-13. by Daniel J. Ferullo, Deani L. Cooper, Hayley R. Moore, Susan T. Lovett posted to bacteria cell-cycle e-coli flow-cytometry stringent-response synchronization techniques by behindtherabbit on 2009-07-16 17:51:18 as along with 1 person dbikard
	Genetic drift at expanding frontiers promotes gene segregation. [My Copy] Proceedings of the National Academy of Sciences of the United States of America, Vol. 104, No. 50. (11 December 2007), pp. 19926-19930. by Oskar Hallatschek, Pascal Hersen, Sharad Ramanathan, David R. Nelson posted to biophysics e-coli by danilov on 2009-07-15 15:17:04 as along with 2 people yyfwuhan operon
	Protein complexes of the Escherichia coli cell envelope. [My Copy] J Biol Chem, Vol. 280, No. 41. (14 October 2005), pp. 34409-34419. by F. Stenberg, P. Chovanec, S. L. Maslen, et al.C. V. Robinson, L. L. Ilag, G. von Heijne, D. O. Daley posted to complex complexes e-coli protein by ARobson on 2009-05-25 12:58:58 as along with 1 person martainn
	Role of a putative third subunit YhcB on the assembly and function of cytochrome bd-type ubiquinol oxidase from Escherichia coli. [My Copy] Biochimica et biophysica acta, Vol. 1757, No. 7. (July 2006), pp. 860-864. by Tatsushi Mogi, Eri Mizuochi-Asai, Sachiko Endou, Satoru Akimoto, Hiro Nakamura posted to bioenergetics cell e-coli membrane protein by ARobson on 2009-05-25 12:58:25 as
	Conserved network of proteins essential for bacterial viability [My Copy] J. Bacteriol. (17 April 2009), JB.00136-09. by Jennifer I. Handford, Berengere Ize, Grant Buchanan, et al.Gareth P. Butland, Jack Greenblatt, Andrew Emili, Tracy Palmer posted to bacteria cell-cycle e-coli eubacteria mutants proteins yeast by behindtherabbit on 2009-05-06 18:01:27 as
	Genome-Scale Reconstruction of <italic>Escherichia coli</italic>'s Transcriptional and Translational Machinery: A Knowledge Base, Its Mathematical Formulation, and Its Functional Characterization [My Copy] PLoS Comput Biol, Vol. 5, No. 3. (13 March 2009), e1000312. by Ines Thiele, Neema Jamshidi, Ronan M. Fleming, Bernhard Palsson posted to e-coli knowledgebase modeling regulation transcriptional translational by dolchan on 2009-03-13 19:33:31 as along with 3 people TRHvidsten pablocarb trfield
	Augmentation of host defense by a unicellular green alga, Chlorella vulgaris, to Escherichia coli infection. [My Copy] Infection and immunity, Vol. 53, No. 2. (August 1986), pp. 267-271. by K. Tanaka, T. Koga, F. Konishi, et al.M. Nakamura, M. Mitsuyama, K. Himeno, K. Nomoto posted to alga algae chlorella coli e-coli escherichia by ca_spencer on 2009-02-23 18:41:05 as
	Enhanced resistance against Escherichia coli infection by subcutaneous administration of the hot-water extract of Chlorella vulgaris in cyclophosphamide-treated mice. [My Copy] Cancer immunology, immunotherapy : CII, Vol. 32, No. 1. (1990), pp. 1-7. by F. Konishi, K. Tanaka, S. Kumamoto, et al.T. Hasegawa, M. Okuda, I. Yano, Y. Yoshikai, K. Nomoto posted to chlorella coli cyclophosphamide e-coli escherichia by ca_spencer on 2009-02-23 16:39:36 as
	Real-time kinetics of gene activity in individual bacteria. [My Copy] Cell, Vol. 123, No. 6. (16 December 2005), pp. 1025-1036. by Ido Golding, Johan Paulsson, Scott M. Zawilski, Edward C. Cox posted to bacteria biology cell e-coli expression gene genetics mrna transcription by behindtherabbit on 2009-01-28 16:35:21 as along with 7 people dbikard pkm yyfwuhan boko4ikameto jjray balabu margaritis
	Modularity of cellular networks shows general center-periphery polarization [My Copy] Bioinformatics (25 October 2008), btn555. by Alexander E. Vinogradov posted to bioinformatics biology cell closeness e-coli eigenvector gene go grid high-throughput interaction kegg modular network power protein regulatory topology ucinet yeast by behindtherabbit to the group Bioinformatics on 2008-12-04 18:59:00 as along with 3 people cgaugain grahamc renatomilani
	SIRENE: supervised inference of regulatory networks. [My Copy] Bioinformatics (Oxford, England), Vol. 24, No. 16. (15 August 2008) by F. Mordelet, J. P. Vert posted to e-coli expression gene network regulatory software transcription by behindtherabbit on 2008-11-22 22:00:14 as along with 2 people Borelli maralena
	Adaptive Mutations in Bacteria: High Rate and Small Effects [My Copy] Science, Vol. 317, No. 5839. (10 August 2007), pp. 813-815. by Lilia Perfeito, Lisete Fernandes, Catarina Mota, Isabel Gordo posted to e-coli mutation mutators selection by alexeid on 2008-10-20 19:35:28 as along with 3 people and 1 group stevanspringer operon zwang FAB-lab
	Kinetics of Single Cells: Observation and Modeling of a Stochastic Process [My Copy] Appl. Environ. Microbiol., Vol. 72, No. 3. (1 March 2006), pp. 2163-2169. by Carmen Pin, Jozsef Baranyi posted to birth-death e-coli by alexeid on 2008-10-20 17:28:50 as along with 1 person balabu
	Network motifs in the transcriptional regulation network of Escherichia coli. [My Copy] Nature genetics, Vol. 31, No. 1. (22 May 2002), pp. 64-68. by Shai S. Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon posted to e-coli motifs networks transcriptional by blobbybirdman on 2008-02-27 20:47:51 as along with 19 people and 1 group antonkratz vtraag sergiun mtagaya kaarsinogen cswinburne jstajic jjray ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel zibuyu maralena hannahrajasingh Borelli ethkim EBI-regulation

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